FC930961
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4_SOLTU (40S ribosomal protein S4 OS=Solanum tuberosum GN=RPS4 PE=2 SV=1) HSP 1 Score: 296.975 bits (759), Expect = 6.690e-80 Identity = 135/211 (63.98%), Postives = 172/211 (81.52%), Query Frame = 3 Query: 39 RGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDGGFNIVHVRDA 671 RG KH KRL+AP HW+LDK+ G +APK S GPHK R+CLPL++ +RNRLKYAL REV +I+MQR V VDGKVRTD TYPAGFMDV+S+ KT E+FRL+YDTKGRF +H ++ EE+++KLCKV+ VQ G+ GIP+L T+D RTIRYPDP IK NDT+K+D+ + KI+DF+KFD G V+M TGGRN GRVGVI +RE+H G F +H++D+ Sbjct: 3 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVIIMRNRLKYALTYREVISILMQRQVMVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEESKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIVDFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETLHIQDS 213
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS43_ARATH (40S ribosomal protein S4-3 OS=Arabidopsis thaliana GN=RPS4D PE=2 SV=2) HSP 1 Score: 296.975 bits (759), Expect = 6.690e-80 Identity = 135/211 (63.98%), Postives = 172/211 (81.52%), Query Frame = 3 Query: 39 RGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDGGFNIVHVRDA 671 RG KH KRL+AP HW+LDK+ G +APK S GPHK R+CLPL++ IRNRLKYAL REV +I+MQR ++VDGKVRTD TYPAGFMDV+S+ KT E+FRL+YDTKGRF +H I+ EEA++KLCKV+ +Q G+ GIP+L T+D RTIRYPDP IK NDT+K+D+ KI++F+KFD G V+M TGGRN GRVGVI +RE+H G F +H++D+ Sbjct: 3 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEANKIVEFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDS 213
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS42_ARATH (40S ribosomal protein S4-2 OS=Arabidopsis thaliana GN=RPS4B PE=2 SV=4) HSP 1 Score: 296.59 bits (758), Expect = 8.737e-80 Identity = 135/211 (63.98%), Postives = 172/211 (81.52%), Query Frame = 3 Query: 39 RGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDGGFNIVHVRDA 671 RG KH KRL+AP HW+LDK+ G +APK S GPHK R+CLPL++ IRNRLKYAL REV +I+MQR ++VDGKVRTD TYPAGFMDV+S+ KT E+FRL+YDTKGRF +H I+ EEA++KLCKV+ +Q G+ GIP+L T+D RTIRYPDP IK NDT+K+D+ KI++F+KFD G V+M TGGRN GRVGVI +RE+H G F +H++D+ Sbjct: 3 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDS 213
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS41_ARATH (40S ribosomal protein S4-1 OS=Arabidopsis thaliana GN=RPS4A PE=2 SV=1) HSP 1 Score: 296.59 bits (758), Expect = 8.737e-80 Identity = 135/211 (63.98%), Postives = 172/211 (81.52%), Query Frame = 3 Query: 39 RGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDGGFNIVHVRDA 671 RG KH KRL+AP HW+LDK+ G +APK S GPHK R+CLPL++ IRNRLKYAL REV +I+MQR ++VDGKVRTD TYPAGFMDV+S+ KT E+FRL+YDTKGRF +H I+ EEA++KLCKV+ +Q G+ GIP+L T+D RTIRYPDP IK NDT+K+D+ KI++F+KFD G V+M TGGRN GRVGVI +RE+H G F +H++D+ Sbjct: 3 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDS 213
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4_DICDI (40S ribosomal protein S4 OS=Dictyostelium discoideum GN=rps4 PE=1 SV=3) HSP 1 Score: 291.197 bits (744), Expect = 3.671e-78 Identity = 135/210 (64.29%), Postives = 169/210 (80.48%), Query Frame = 3 Query: 39 RGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDGGFNIVHVRD 668 RGP KH KRL+AP+HW+LDK+SG +AP+ S GPHKLR+CLPLI+ +RNRLKYAL +EV I+MQRLVKVDGKVRTD YPAGFMDVIS+EKT E+FRL++D KGRFT+ RI EEA++KL +V RV+ G GIP++ T D RTIRYPDPAI ++DT+K+DI +GKI F+ F+ + M GG N+GRVG +THRE+H G F+IVHV D Sbjct: 3 RGPKKHLKRLAAPNHWMLDKLSGKWAPRPSSGPHKLRECLPLILVLRNRLKYALTKKEVTLILMQRLVKVDGKVRTDPNYPAGFMDVISIEKTKENFRLLFDPKGRFTLQRITPEEAKFKLARVTRVETGNQGIPYVHTDDGRTIRYPDPAISIHDTIKIDIESGKITAFIPFEVNNLCMIVGGHNLGRVGAVTHREKHPGSFDIVHVTD 212
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4_CAEEL (40S ribosomal protein S4 OS=Caenorhabditis elegans GN=rps-4 PE=1 SV=1) HSP 1 Score: 280.026 bits (715), Expect = 8.463e-75 Identity = 130/216 (60.19%), Postives = 169/216 (78.24%), Query Frame = 3 Query: 36 MRGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDGGFNIVHVRDALDNS 683 MRGP KH KRL+APSHW+LDK+ G +A + +PGPHKLR+ LPL +F+RNRLKYALN E K I+ QR+V+VDGKVRT +P GFMDV+++E+T E+FR++YDTKGR+ VHRIQA EA++KLCKVK V+ G+P L T D RTIRYPDP +KVNDT+ +I+T KI D VKF+ G + TGGRN+GRVG+I HRER G +I+H++D+ +S Sbjct: 1 MRGPKKHLKRLAAPSHWMLDKLGGVFAVRPNPGPHKLRESLPLSLFLRNRLKYALNYTEAKKILTQRVVRVDGKVRTCHKFPTGFMDVVAIERTNEYFRMLYDTKGRYVVHRIQAAEADFKLCKVKSVRTVNKGVPVLTTTDGRTIRYPDPHVKVNDTIVFNISTQKITDSVKFEPGNLAYVTGGRNVGRVGIIGHRERLPGASDIIHIKDSAGHS 216
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4_PRUAR (40S ribosomal protein S4 OS=Prunus armeniaca GN=RPS4 PE=2 SV=1) HSP 1 Score: 270.396 bits (690), Expect = 6.706e-72 Identity = 127/211 (60.19%), Postives = 162/211 (76.78%), Query Frame = 3 Query: 39 RGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDGGFNIVHVRDA 671 RG KH KRL+AP HW+LDK+ G +APK S GPHK R+CLPLI+ +RNRLKYAL REV +I+MQR + VDGK+ + DV+S+ KT E+FRL+YDTKGRF +H I+ EE+++KLCKV+ VQ G+ GIP++ T+D RTIRYPDP IK NDT+K+D+ T KI DF+KFD G V+M TGGRN GRVGVI +RE+H G F +HV+DA Sbjct: 3 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVVSILMQRHILVDGKIH----FCIRLSDVVSIPKTNENFRLLYDTKGRFRLHSIRDEESKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITDFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHVQDA 209
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4_TETTH (40S ribosomal protein S4 OS=Tetrahymena thermophila PE=1 SV=1) HSP 1 Score: 231.106 bits (588), Expect = 4.508e-60 Identity = 111/217 (51.15%), Postives = 149/217 (68.66%), Query Frame = 3 Query: 39 RGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRL--VKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDGGFNIVHVRDALDNS 683 RGP KH KR++AP W+L+K+ G +A + S GPHKLR+ LPL V ++ RL YALNGR+V I+ + V VD KVR D YP G MDV+ +EKT + FR++YDTKGRF + + EEA+YKL KV +G IP++VTHD+RTIR+P+P IK+ DT+K D+ KI +F +SG V G N+GRVG+I H E+H G F+I HV+DA N+ Sbjct: 2 RGPKKHLKRINAPKSWMLNKLGGIWATRPSQGPHKLRESLPLSVLLKERLNYALNGRDVTLILNDKEGNVFVDQKVRRDKGYPTGLMDVVRIEKTDQSFRILYDTKGRFVLKSLSKEEAKYKLLKVTAKAIGPNQIPYIVTHDSRTIRFPNPEIKIGDTLKYDLVNNKIENFAHLESGNVCYIQQGNNIGRVGIIQHIEKHQGSFDICHVKDAKGNA 218
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4_ENCCU (40S ribosomal protein S4 OS=Encephalitozoon cuniculi GN=RPS4 PE=1 SV=1) HSP 1 Score: 166.777 bits (421), Expect = 1.044e-40 Identity = 81/192 (42.19%), Postives = 125/192 (65.10%), Query Frame = 3 Query: 42 GPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVI 617 G H KR +AP W+LDK GT+A + GPHK +C+PL I L+YA N +E+ I+ ++ +KV+G+VRT++ +P G DV+S+EKTGEHFR++Y+ +F +HRI +EEA Y+L KV + + GIP++V+ +IR+ DPAI + T+K+ T K+++++ VI + G+ GRVGVI Sbjct: 4 GHRDHLKRKTAPKSWMLDKQGGTFALMPASGPHKKTECIPLGYLISRFLRYASNFKELSIILAEKNIKVNGRVRTNSHFPVGLFDVVSIEKTGEHFRVLYNVHKKFHLHRISSEEASYRLTKVTK-KYENQGIPYIVSSCGLSIRFCDPAIDLGYTIKISNETSKVIEYIVPGPDKVIFVSRGKARGRVGVI 194
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4E_METTH (30S ribosomal protein S4e OS=Methanobacterium thermoautotrophicum GN=rps4e PE=3 SV=1) HSP 1 Score: 140.969 bits (354), Expect = 6.136e-33 Identity = 73/189 (38.62%), Postives = 108/189 (57.14%), Query Frame = 3 Query: 51 KHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVI 617 KH KR +P HW + + K SPGPH + + LPL++ +R+ LK A N RE + I+ V VDG+ R + +P GFMDV+S+ +TG+ +R++ D +GR +H I E A +KLCK+ KGG L HD R D +V D VK+ I +IL+ + F+ + + TGGR+ G +G I Sbjct: 8 KHLKRFKSPVHWPIHPKEYKWTVKPSPGPHAIENSLPLMIIVRDILKVADNAREARKIINSGEVLVDGRPRKNYKFPVGFMDVVSIPRTGDVYRVLPDERGRLVLHPIDEENAGFKLCKIVNKTTIKGGRTQLNLHDGRNY-LSDDEFRVGDVVKLSIPEQEILERIPFEKDSLGLVTGGRHTGEIGKI 195 The following BLAST results are available for this feature:
BLAST of FC930961 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 103
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Sequences
The
following sequences are available for this feature:
EST sequence >FC930961 ID=FC930961; Name=FC930961; organism=Citrus clementina; type=EST; length=713bpback to top |