FC930961

Overview
NameFC930961
Unique NameFC930961
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length713
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15316 contig Ccv1_Contig15316:33..746. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4_SOLTU (40S ribosomal protein S4 OS=Solanum tuberosum GN=RPS4 PE=2 SV=1)

HSP 1 Score: 296.975 bits (759), Expect = 6.690e-80
Identity = 135/211 (63.98%), Postives = 172/211 (81.52%), Query Frame = 3
Query:   39 RGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDGGFNIVHVRDA 671
            RG  KH KRL+AP HW+LDK+ G +APK S GPHK R+CLPL++ +RNRLKYAL  REV +I+MQR V VDGKVRTD TYPAGFMDV+S+ KT E+FRL+YDTKGRF +H ++ EE+++KLCKV+ VQ G+ GIP+L T+D RTIRYPDP IK NDT+K+D+ + KI+DF+KFD G V+M TGGRN GRVGVI +RE+H G F  +H++D+
Sbjct:    3 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVIIMRNRLKYALTYREVISILMQRQVMVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEESKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIVDFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETLHIQDS 213          
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS43_ARATH (40S ribosomal protein S4-3 OS=Arabidopsis thaliana GN=RPS4D PE=2 SV=2)

HSP 1 Score: 296.975 bits (759), Expect = 6.690e-80
Identity = 135/211 (63.98%), Postives = 172/211 (81.52%), Query Frame = 3
Query:   39 RGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDGGFNIVHVRDA 671
            RG  KH KRL+AP HW+LDK+ G +APK S GPHK R+CLPL++ IRNRLKYAL  REV +I+MQR ++VDGKVRTD TYPAGFMDV+S+ KT E+FRL+YDTKGRF +H I+ EEA++KLCKV+ +Q G+ GIP+L T+D RTIRYPDP IK NDT+K+D+   KI++F+KFD G V+M TGGRN GRVGVI +RE+H G F  +H++D+
Sbjct:    3 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEANKIVEFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDS 213          
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS42_ARATH (40S ribosomal protein S4-2 OS=Arabidopsis thaliana GN=RPS4B PE=2 SV=4)

HSP 1 Score: 296.59 bits (758), Expect = 8.737e-80
Identity = 135/211 (63.98%), Postives = 172/211 (81.52%), Query Frame = 3
Query:   39 RGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDGGFNIVHVRDA 671
            RG  KH KRL+AP HW+LDK+ G +APK S GPHK R+CLPL++ IRNRLKYAL  REV +I+MQR ++VDGKVRTD TYPAGFMDV+S+ KT E+FRL+YDTKGRF +H I+ EEA++KLCKV+ +Q G+ GIP+L T+D RTIRYPDP IK NDT+K+D+   KI++F+KFD G V+M TGGRN GRVGVI +RE+H G F  +H++D+
Sbjct:    3 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDS 213          
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS41_ARATH (40S ribosomal protein S4-1 OS=Arabidopsis thaliana GN=RPS4A PE=2 SV=1)

HSP 1 Score: 296.59 bits (758), Expect = 8.737e-80
Identity = 135/211 (63.98%), Postives = 172/211 (81.52%), Query Frame = 3
Query:   39 RGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDGGFNIVHVRDA 671
            RG  KH KRL+AP HW+LDK+ G +APK S GPHK R+CLPL++ IRNRLKYAL  REV +I+MQR ++VDGKVRTD TYPAGFMDV+S+ KT E+FRL+YDTKGRF +H I+ EEA++KLCKV+ +Q G+ GIP+L T+D RTIRYPDP IK NDT+K+D+   KI++F+KFD G V+M TGGRN GRVGVI +RE+H G F  +H++D+
Sbjct:    3 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDS 213          
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4_DICDI (40S ribosomal protein S4 OS=Dictyostelium discoideum GN=rps4 PE=1 SV=3)

HSP 1 Score: 291.197 bits (744), Expect = 3.671e-78
Identity = 135/210 (64.29%), Postives = 169/210 (80.48%), Query Frame = 3
Query:   39 RGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDGGFNIVHVRD 668
            RGP KH KRL+AP+HW+LDK+SG +AP+ S GPHKLR+CLPLI+ +RNRLKYAL  +EV  I+MQRLVKVDGKVRTD  YPAGFMDVIS+EKT E+FRL++D KGRFT+ RI  EEA++KL +V RV+ G  GIP++ T D RTIRYPDPAI ++DT+K+DI +GKI  F+ F+   + M  GG N+GRVG +THRE+H G F+IVHV D
Sbjct:    3 RGPKKHLKRLAAPNHWMLDKLSGKWAPRPSSGPHKLRECLPLILVLRNRLKYALTKKEVTLILMQRLVKVDGKVRTDPNYPAGFMDVISIEKTKENFRLLFDPKGRFTLQRITPEEAKFKLARVTRVETGNQGIPYVHTDDGRTIRYPDPAISIHDTIKIDIESGKITAFIPFEVNNLCMIVGGHNLGRVGAVTHREKHPGSFDIVHVTD 212          
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4_CAEEL (40S ribosomal protein S4 OS=Caenorhabditis elegans GN=rps-4 PE=1 SV=1)

HSP 1 Score: 280.026 bits (715), Expect = 8.463e-75
Identity = 130/216 (60.19%), Postives = 169/216 (78.24%), Query Frame = 3
Query:   36 MRGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDGGFNIVHVRDALDNS 683
            MRGP KH KRL+APSHW+LDK+ G +A + +PGPHKLR+ LPL +F+RNRLKYALN  E K I+ QR+V+VDGKVRT   +P GFMDV+++E+T E+FR++YDTKGR+ VHRIQA EA++KLCKVK V+    G+P L T D RTIRYPDP +KVNDT+  +I+T KI D VKF+ G +   TGGRN+GRVG+I HRER  G  +I+H++D+  +S
Sbjct:    1 MRGPKKHLKRLAAPSHWMLDKLGGVFAVRPNPGPHKLRESLPLSLFLRNRLKYALNYTEAKKILTQRVVRVDGKVRTCHKFPTGFMDVVAIERTNEYFRMLYDTKGRYVVHRIQAAEADFKLCKVKSVRTVNKGVPVLTTTDGRTIRYPDPHVKVNDTIVFNISTQKITDSVKFEPGNLAYVTGGRNVGRVGIIGHRERLPGASDIIHIKDSAGHS 216          
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4_PRUAR (40S ribosomal protein S4 OS=Prunus armeniaca GN=RPS4 PE=2 SV=1)

HSP 1 Score: 270.396 bits (690), Expect = 6.706e-72
Identity = 127/211 (60.19%), Postives = 162/211 (76.78%), Query Frame = 3
Query:   39 RGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDGGFNIVHVRDA 671
            RG  KH KRL+AP HW+LDK+ G +APK S GPHK R+CLPLI+ +RNRLKYAL  REV +I+MQR + VDGK+     +     DV+S+ KT E+FRL+YDTKGRF +H I+ EE+++KLCKV+ VQ G+ GIP++ T+D RTIRYPDP IK NDT+K+D+ T KI DF+KFD G V+M TGGRN GRVGVI +RE+H G F  +HV+DA
Sbjct:    3 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVVSILMQRHILVDGKIH----FCIRLSDVVSIPKTNENFRLLYDTKGRFRLHSIRDEESKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITDFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHVQDA 209          
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4_TETTH (40S ribosomal protein S4 OS=Tetrahymena thermophila PE=1 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 4.508e-60
Identity = 111/217 (51.15%), Postives = 149/217 (68.66%), Query Frame = 3
Query:   39 RGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRL--VKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDGGFNIVHVRDALDNS 683
            RGP KH KR++AP  W+L+K+ G +A + S GPHKLR+ LPL V ++ RL YALNGR+V  I+  +   V VD KVR D  YP G MDV+ +EKT + FR++YDTKGRF +  +  EEA+YKL KV    +G   IP++VTHD+RTIR+P+P IK+ DT+K D+   KI +F   +SG V     G N+GRVG+I H E+H G F+I HV+DA  N+
Sbjct:    2 RGPKKHLKRINAPKSWMLNKLGGIWATRPSQGPHKLRESLPLSVLLKERLNYALNGRDVTLILNDKEGNVFVDQKVRRDKGYPTGLMDVVRIEKTDQSFRILYDTKGRFVLKSLSKEEAKYKLLKVTAKAIGPNQIPYIVTHDSRTIRFPNPEIKIGDTLKYDLVNNKIENFAHLESGNVCYIQQGNNIGRVGIIQHIEKHQGSFDICHVKDAKGNA 218          
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4_ENCCU (40S ribosomal protein S4 OS=Encephalitozoon cuniculi GN=RPS4 PE=1 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.044e-40
Identity = 81/192 (42.19%), Postives = 125/192 (65.10%), Query Frame = 3
Query:   42 GPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVI 617
            G   H KR +AP  W+LDK  GT+A   + GPHK  +C+PL   I   L+YA N +E+  I+ ++ +KV+G+VRT++ +P G  DV+S+EKTGEHFR++Y+   +F +HRI +EEA Y+L KV + +    GIP++V+    +IR+ DPAI +  T+K+   T K+++++      VI  + G+  GRVGVI
Sbjct:    4 GHRDHLKRKTAPKSWMLDKQGGTFALMPASGPHKKTECIPLGYLISRFLRYASNFKELSIILAEKNIKVNGRVRTNSHFPVGLFDVVSIEKTGEHFRVLYNVHKKFHLHRISSEEASYRLTKVTK-KYENQGIPYIVSSCGLSIRFCDPAIDLGYTIKISNETSKVIEYIVPGPDKVIFVSRGKARGRVGVI 194          
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4E_METTH (30S ribosomal protein S4e OS=Methanobacterium thermoautotrophicum GN=rps4e PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 6.136e-33
Identity = 73/189 (38.62%), Postives = 108/189 (57.14%), Query Frame = 3
Query:   51 KHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVI 617
            KH KR  +P HW +      +  K SPGPH + + LPL++ +R+ LK A N RE + I+    V VDG+ R +  +P GFMDV+S+ +TG+ +R++ D +GR  +H I  E A +KLCK+      KGG   L  HD R     D   +V D VK+ I   +IL+ + F+   + + TGGR+ G +G I
Sbjct:    8 KHLKRFKSPVHWPIHPKEYKWTVKPSPGPHAIENSLPLMIIVRDILKVADNAREARKIINSGEVLVDGRPRKNYKFPVGFMDVVSIPRTGDVYRVLPDERGRLVLHPIDEENAGFKLCKIVNKTTIKGGRTQLNLHDGRNY-LSDDEFRVGDVVKLSIPEQEILERIPFEKDSLGLVTGGRHTGEIGKI 195          
The following BLAST results are available for this feature:
BLAST of FC930961 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
RS4_SOLTU6.690e-8063.9840S ribosomal protein S4 OS=Solanum tuberosum GN=R... [more]
RS43_ARATH6.690e-8063.9840S ribosomal protein S4-3 OS=Arabidopsis thaliana... [more]
RS42_ARATH8.737e-8063.9840S ribosomal protein S4-2 OS=Arabidopsis thaliana... [more]
RS41_ARATH8.737e-8063.9840S ribosomal protein S4-1 OS=Arabidopsis thaliana... [more]
RS4_DICDI3.671e-7864.2940S ribosomal protein S4 OS=Dictyostelium discoide... [more]
RS4_CAEEL8.463e-7560.1940S ribosomal protein S4 OS=Caenorhabditis elegans... [more]
RS4_PRUAR6.706e-7260.1940S ribosomal protein S4 OS=Prunus armeniaca GN=RP... [more]
RS4_TETTH4.508e-6051.1540S ribosomal protein S4 OS=Tetrahymena thermophil... [more]
RS4_ENCCU1.044e-4042.1940S ribosomal protein S4 OS=Encephalitozoon cunicu... [more]
RS4E_METTH6.136e-3338.6230S ribosomal protein S4e OS=Methanobacterium ther... [more]

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Properties
Property NameValue
Genbank descriptionC34110H07EF PostHarvP1 Citrus clementina cDNA clone C34110H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930961 ID=FC930961; Name=FC930961; organism=Citrus clementina; type=EST; length=713bp
GGACCACCTAACCTTCAGTCGACAAATCAGTCAAAATGCGCGGCCCCGGA
AAGCACCAGAAGCGCCTCAGCGCGCCCTCGCACTGGCTCTTGGACAAAAT
GTCCGGAACCTACGCGCCCAAGGCCTCCCCCGGTCCCCACAAGCTCCGGG
ACTGCCTTCCCCTGATTGTCTTCATCCGTAACCGTCTCAAGTACGCCCTG
AACGGTCGCGAGGTCAAGGCCATCATGATGCAGCGTCTGGTCAAGGTTGA
CGGCAAGGTCCGCACCGACACCACCTACCCCGCTGGATTCATGGACGTCA
TCTCCCTCGAGAAGACCGGCGAGCACTTCCGTCTCGTTTACGACACCAAG
GGTCGCTTCACCGTCCACCGTATTCAGGCTGAGGAGGCTGAGTACAAGCT
CTGCAAGGTCAAGCGTGTTCAGCTCGGCAAGGGCGGGATCCCATTCTTGG
TTACGCACGATGCGCGAACCATCCGCTACCCCGACCCTGCCATCAAGGTC
AACGACACCGTCAAGGTTGACATTGCCACTGGCAAGATCCTCGACTTCGT
CAAGTTCGACTCCGGTGTTGTCATCATGGCCACTGGTGGTCGCAACATGG
GTCGTGTTGGTGTCATCACTCACCGTGAGCGTCACGACGGTGGTTTCAAC
ATCGTCCACGTTCGCGATGCTCTGGACAACAGTTCGCTCCCGTGAGTCCA
CGTCTTCGTCATG
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