FC930961

Overview
NameFC930961
Unique NameFC930961
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length713
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4E_HYPBU (30S ribosomal protein S4e OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rps4e PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.784e-32
Identity = 79/219 (36.07%), Postives = 119/219 (54.34%), Query Frame = 3
Query:   42 GPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDART--IRYPDPA-------IKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDGGFNIVHVRDA 671
            G  +H K L+AP  W + + +G +  K SPGPH +   +PL++ +R+ L YA   RE + ++ +   K+DG+VR +  YP GFMDVI +  TGE +R++      FT+H I  EEA++KL +++     KGG   L  HD R   IR  DP         K   TVK+ I   ++L +   + G +++  GGRN+GRVG I   +       IV + DA
Sbjct:    5 GGRRHLKTLAAPKFWPVRQRAGIFTVKPSPGPHPIERSIPLLILVRDVLGYAKTAREARKLIAEGHFKIDGRVRRNYKYPVGFMDVIEIVDTGEFYRVLPYPTRFFTLHPISKEEAQFKLGRIEDKSTVKGGHIQLHLHDGRNVLIRVSDPTNPVEAKPYKTLGTVKISIPEQQLLGYAPLEVGSLVIIFGGRNVGRVGRIVSIQPGMRRRGIVTIEDA 223          
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4E_STAMF (30S ribosomal protein S4e OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rps4e PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 7.500e-31
Identity = 74/200 (37.00%), Postives = 111/200 (55.50%), Query Frame = 3
Query:   42 GPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDART--IRYPDPAIKVND------TVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVI 617
            G  KH K L AP  W + +    +A K SPGPH +  C PL++ +R+ L YA   RE + ++ +   KVDG+VR +  YP G MDVI +  TGE +R++        +  I  EEA+YKL +++     KGG   L  HD R   I+  DP   V D      T+++ I   +IL+++  D G +++ +GGRN+GRVG +
Sbjct:    5 GGKKHLKALVAPKFWPILRKEYKWAVKPSPGPHPIERCFPLLIIVRDILGYAKTAREARKLISEGHFKVDGRVRKNYKYPVGLMDVIEIVDTGETYRVIPVPVKVLGLIEIDKEEAKYKLSRIENKTTVKGGHIQLNLHDGRNVLIKVSDPKNPVEDIYKTLGTLQISIPEQQILNYIPLDEGTLVIISGGRNVGRVGKV 204          
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4E_IGNH4 (30S ribosomal protein S4e OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rps4e PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.279e-30
Identity = 72/204 (35.29%), Postives = 113/204 (55.39%), Query Frame = 3
Query:   33 KMRGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDART--IRYPDP-------AIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVI 617
            ++ G  +H KRL+AP+ W + +    +A K  PGPH + + +PL++ +R+ L YA   RE + ++ +  +KVDG+VR D  +P G MDVI +    E++R++          RI AEEA+ K+C+++     KGG   L  HD R   IR  DP         K    + + +   +ILD+V F+ GV+ +   GRN+GRVG I
Sbjct:    3 RVGGGKRHLKRLAAPAFWPIHRKEAVWAVKPRPGPHPIEESIPLLILVRDVLGYAETSREARKLIAEGRIKVDGRVRKDYKFPVGAMDVIEIVGADEYYRMIPYPVKYLVPMRIDAEEAKKKICRIENKVTVKGGHVQLNLHDGRNVLIRVEDPRNPVEAQEYKTLGGLLITVPEQEILDYVPFEEGVIAIVKSGRNVGRVGRI 206          
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4E_PYRHO (30S ribosomal protein S4e OS=Pyrococcus horikoshii GN=rps4e PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.671e-30
Identity = 70/214 (32.71%), Postives = 119/214 (55.61%), Query Frame = 3
Query:   39 RGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYP---DPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDGGF-NIVHVRD 668
            +GP +H KRL+APS W +++ +  +A +  PGPH +R  +PL+  +R+ L YA   RE + I+ +    VDGKVR D  +P G MDV+S+ +TGEH+R++ +  G+  +H I  EEA  K  +++  ++ KG    L  HD      P         + TV + +   +I++ + F+ G  +  T G+N+ R G I   ++   G+ ++V + D
Sbjct:    4 KGPKRHLKRLAAPSSWYIERKAYKWAVRPRPGPHNMRTSIPLLYIVRDYLGYAKTAREARKILNEGKFLVDGKVRKDYKFPVGIMDVVSIPETGEHYRVLPNRIGKLVLHPISEEEANIKPLRIRNKRMVKGAKVQLNFHDGTNHLIPLTEKDNYFTSYTVLMKVPEREIMEVLPFEKGAYVFVTQGKNVARKGRIVEIKKFPMGWPDVVTIED 217          
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4E_DESK1 (30S ribosomal protein S4e OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=rps4e PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.850e-30
Identity = 71/200 (35.50%), Postives = 111/200 (55.50%), Query Frame = 3
Query:   42 GPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDART--IRYPDPAIKVNDT------VKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVI 617
            G  +H K ++AP +W + +    +  K+SPGPH +   LPL++ +R+ L YA  G+E + ++ +   K+DG+VR D  +P G MDVI +    +++R++        +  I  EEA +KLC+++     K G   L  HD R   IR  DP   V DT      +K+ I   +ILD+V    GV+ + +GGRN+GRVG I
Sbjct:    5 GGSRHLKAINAPRYWPILRKEYRWVVKSSPGPHPISRSLPLLILVRDMLGYAKTGKEARRLIAEGYFKIDGRVRRDYKFPVGVMDVIEIVGVNKYYRVIPVPTKVLGLIEISREEASFKLCRIENKTTVKNGHIQLNLHDGRNVLIRVNDPRNPVEDTYDTLGVLKLSIPVQQILDYVPLKEGVIAIVSGGRNVGRVGKI 204          
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4E_PYRKO (30S ribosomal protein S4e OS=Pyrococcus kodakaraensis GN=rps4e PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.722e-30
Identity = 71/215 (33.02%), Postives = 122/215 (56.74%), Query Frame = 3
Query:   39 RGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDAR----TIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDGGF-NIVHVRD 668
            +GP +H KRL+AP+ W + + +  +A + SPGPH ++  +PLI  +R+ L YA   RE + I+ +  + VDG+VR D  +P G MDV+S+ +TGEH+R++ +  G+  +H I  EEA+ K  ++   ++ KG    L  HD      ++   D A K + TV + +   +I+  + F+ G  +  T G+N+ R G I    +   G+ ++V + D
Sbjct:    4 KGPKRHLKRLAAPTSWYIHRKAYKWAVRPSPGPHSMKTSIPLIYIVRDYLGYAKTAREARKILNEGKILVDGRVRKDYKFPVGIMDVVSIPETGEHYRVLPNRIGKLILHPISEEEAKLKPFRINNKRMVKGAKVQLNLHDGSNHLVSLAEKD-AYKTSYTVIMQVPERQIVKVLPFEVGAYVFVTQGKNVARKGKIVEVRQFPMGWPDVVTIED 217          
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4E_PYRAB (30S ribosomal protein S4e OS=Pyrococcus abyssi GN=rps4e PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 8.293e-30
Identity = 69/214 (32.24%), Postives = 119/214 (55.61%), Query Frame = 3
Query:   39 RGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYP---DPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDGGF-NIVHVRD 668
            +GP +H KRL+AP+ W +++ +  +A +  PGPH +R  +PL+  +R+ L YA   RE + I+ +    VDG+VR D  +P G MDV+S+ +TGEH+R++ +  G+  +H I  EEA  K  +++  ++ KG    L  HD      P         + TV + +   +IL+ + F+ G  +  T G+N+ R G I   ++   G+ ++V + D
Sbjct:    4 KGPKRHLKRLAAPTSWYIERKAYKWAVRPRPGPHNMRTSIPLLYIVRDYLGYAKTAREARKILNEGKFLVDGRVRKDYKFPVGIMDVVSIPETGEHYRVLPNRIGKLILHPISEEEANIKPLRIRNKRMVKGAKIQLNFHDGTNHLIPLSEKDNYFTSYTVLMKVPEREILEVLPFEKGAYVFVTQGKNVARKGRIVEIKKFPMGWPDVVTIED 217          
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4E_METJA (30S ribosomal protein S4e OS=Methanocaldococcus jannaschii GN=rps4e PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.083e-29
Identity = 75/206 (36.41%), Postives = 110/206 (53.40%), Query Frame = 3
Query:   39 RGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDAR--TIRYPDP------AIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRER 632
            +GP +H KRL+AP  W L +    +  +  PG H + + LPL++ +R+ LKYA N RE K I+    V VDG+VR +   P G MDV+SL    E++R+++D KGR  +     E  + KLCK+K   + KGG   L  HD R   I+  DP        K  DT+ + I   +I   + F+ G +   TGG+++G    I   ER
Sbjct:    4 KGPKRHLKRLAAPVRWELPRKIHKFTVRPLPGAHPMSESLPLLLIVRDILKYADNAREAKKIIKMGKVLVDGRVRKEEKLPVGLMDVVSLPDANENYRVLFDRKGRIKLK--PTENPDVKLCKIKNKTVIKGGHIQLNLHDGRNIVIKVSDPTKAEEDVYKTGDTLLISIPEQEIKAHIPFEVGKLAYITGGKHVGDFAKIVEIER 207          
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4E_PYRFU (30S ribosomal protein S4e OS=Pyrococcus furiosus GN=rps4e PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.413e-29
Identity = 72/215 (33.49%), Postives = 121/215 (56.28%), Query Frame = 3
Query:   39 RGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVN----DTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDGGF-NIVHVRD 668
            +GP +H KRL+AP+ W +++ +  +A +  PGPH +R  +PL+  +R+ L YA   RE + I+ +    VDG+VR D  +P G MDV+S+ +TGEH+R++ +  G+  +H I  +EA  K  +++  ++ KG    L  HD  T      A K N     TV + +   +IL+ + F+ G  +  T G+N+ R G I   +R   G+ ++V + D
Sbjct:    4 KGPKRHLKRLAAPTSWYIERKAYKWAVRPRPGPHNMRTSIPLLYIVRDYLGYAKTAREARKILNEGKFLVDGRVRKDYKFPVGIMDVVSIPETGEHYRVLPNRIGKLILHPISEDEAFIKPLRIRNKRMIKGARVQLNFHDG-TNHIVSIAEKDNYFTSYTVLMKVPEREILEVLPFEKGAYVFVTQGKNVARKGRIVEIKRFPMGWPDVVTIED 217          
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4E_METM5 (30S ribosomal protein S4e OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rps4e PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 7.020e-29
Identity = 70/206 (33.98%), Postives = 112/206 (54.37%), Query Frame = 3
Query:   36 MRGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDAR--------TIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRE 629
            ++GP KH KRL+AP++W L +    +  + SPGPH +   LPL++ +R+ LKYA N RE K I+    + +DG  R +  +PAG MDV+S+ +  E++ +++D  GR ++ +   ++A+ KLCK+    + KGG   L  HD R          +  +   K  D+V V I    I+  V F  G +   TGG+++G    I   E
Sbjct:    3 IKGPRKHLKRLAAPANWQLPRKVKAFTVRPSPGPHSMDKSLPLLLVVRDVLKYADNAREAKKIIQTGKILIDGLKRKEYKHPAGLMDVLSIPEMDENYLVLFDESGRISLKK--TDKADAKLCKIVNKTVIKGGHIQLNLHDGRNQIVKVSDATKAEEDVYKTGDSVLVSIPEQSIVGHVAFGEGKLAYVTGGKHVGEFAKIVEVE 206          
The following BLAST results are available for this feature:
BLAST of FC930961 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
RS4E_HYPBU6.784e-3236.0730S ribosomal protein S4e OS=Hyperthermus butylicu... [more]
RS4E_STAMF7.500e-3137.0030S ribosomal protein S4e OS=Staphylothermus marin... [more]
RS4E_IGNH41.279e-3035.2930S ribosomal protein S4e OS=Ignicoccus hospitalis... [more]
RS4E_PYRHO1.671e-3032.7130S ribosomal protein S4e OS=Pyrococcus horikoshii... [more]
RS4E_DESK12.850e-3035.5030S ribosomal protein S4e OS=Desulfurococcus kamch... [more]
RS4E_PYRKO3.722e-3033.0230S ribosomal protein S4e OS=Pyrococcus kodakaraen... [more]
RS4E_PYRAB8.293e-3032.2430S ribosomal protein S4e OS=Pyrococcus abyssi GN=... [more]
RS4E_METJA1.083e-2936.4130S ribosomal protein S4e OS=Methanocaldococcus ja... [more]
RS4E_PYRFU2.413e-2933.4930S ribosomal protein S4e OS=Pyrococcus furiosus G... [more]
RS4E_METM57.020e-2933.9830S ribosomal protein S4e OS=Methanococcus maripal... [more]

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Properties
Property NameValue
Genbank descriptionC34110H07EF PostHarvP1 Citrus clementina cDNA clone C34110H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930961 ID=FC930961; Name=FC930961; organism=Citrus clementina; type=EST; length=713bp
GGACCACCTAACCTTCAGTCGACAAATCAGTCAAAATGCGCGGCCCCGGA
AAGCACCAGAAGCGCCTCAGCGCGCCCTCGCACTGGCTCTTGGACAAAAT
GTCCGGAACCTACGCGCCCAAGGCCTCCCCCGGTCCCCACAAGCTCCGGG
ACTGCCTTCCCCTGATTGTCTTCATCCGTAACCGTCTCAAGTACGCCCTG
AACGGTCGCGAGGTCAAGGCCATCATGATGCAGCGTCTGGTCAAGGTTGA
CGGCAAGGTCCGCACCGACACCACCTACCCCGCTGGATTCATGGACGTCA
TCTCCCTCGAGAAGACCGGCGAGCACTTCCGTCTCGTTTACGACACCAAG
GGTCGCTTCACCGTCCACCGTATTCAGGCTGAGGAGGCTGAGTACAAGCT
CTGCAAGGTCAAGCGTGTTCAGCTCGGCAAGGGCGGGATCCCATTCTTGG
TTACGCACGATGCGCGAACCATCCGCTACCCCGACCCTGCCATCAAGGTC
AACGACACCGTCAAGGTTGACATTGCCACTGGCAAGATCCTCGACTTCGT
CAAGTTCGACTCCGGTGTTGTCATCATGGCCACTGGTGGTCGCAACATGG
GTCGTGTTGGTGTCATCACTCACCGTGAGCGTCACGACGGTGGTTTCAAC
ATCGTCCACGTTCGCGATGCTCTGGACAACAGTTCGCTCCCGTGAGTCCA
CGTCTTCGTCATG
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