FC930961
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4E_HYPBU (30S ribosomal protein S4e OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rps4e PE=3 SV=1) HSP 1 Score: 137.502 bits (345), Expect = 6.784e-32 Identity = 79/219 (36.07%), Postives = 119/219 (54.34%), Query Frame = 3 Query: 42 GPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDART--IRYPDPA-------IKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDGGFNIVHVRDA 671 G +H K L+AP W + + +G + K SPGPH + +PL++ +R+ L YA RE + ++ + K+DG+VR + YP GFMDVI + TGE +R++ FT+H I EEA++KL +++ KGG L HD R IR DP K TVK+ I ++L + + G +++ GGRN+GRVG I + IV + DA Sbjct: 5 GGRRHLKTLAAPKFWPVRQRAGIFTVKPSPGPHPIERSIPLLILVRDVLGYAKTAREARKLIAEGHFKIDGRVRRNYKYPVGFMDVIEIVDTGEFYRVLPYPTRFFTLHPISKEEAQFKLGRIEDKSTVKGGHIQLHLHDGRNVLIRVSDPTNPVEAKPYKTLGTVKISIPEQQLLGYAPLEVGSLVIIFGGRNVGRVGRIVSIQPGMRRRGIVTIEDA 223
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4E_STAMF (30S ribosomal protein S4e OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rps4e PE=3 SV=1) HSP 1 Score: 134.035 bits (336), Expect = 7.500e-31 Identity = 74/200 (37.00%), Postives = 111/200 (55.50%), Query Frame = 3 Query: 42 GPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDART--IRYPDPAIKVND------TVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVI 617 G KH K L AP W + + +A K SPGPH + C PL++ +R+ L YA RE + ++ + KVDG+VR + YP G MDVI + TGE +R++ + I EEA+YKL +++ KGG L HD R I+ DP V D T+++ I +IL+++ D G +++ +GGRN+GRVG + Sbjct: 5 GGKKHLKALVAPKFWPILRKEYKWAVKPSPGPHPIERCFPLLIIVRDILGYAKTAREARKLISEGHFKVDGRVRKNYKYPVGLMDVIEIVDTGETYRVIPVPVKVLGLIEIDKEEAKYKLSRIENKTTVKGGHIQLNLHDGRNVLIKVSDPKNPVEDIYKTLGTLQISIPEQQILNYIPLDEGTLVIISGGRNVGRVGKV 204
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4E_IGNH4 (30S ribosomal protein S4e OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rps4e PE=3 SV=1) HSP 1 Score: 133.265 bits (334), Expect = 1.279e-30 Identity = 72/204 (35.29%), Postives = 113/204 (55.39%), Query Frame = 3 Query: 33 KMRGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDART--IRYPDP-------AIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVI 617 ++ G +H KRL+AP+ W + + +A K PGPH + + +PL++ +R+ L YA RE + ++ + +KVDG+VR D +P G MDVI + E++R++ RI AEEA+ K+C+++ KGG L HD R IR DP K + + + +ILD+V F+ GV+ + GRN+GRVG I Sbjct: 3 RVGGGKRHLKRLAAPAFWPIHRKEAVWAVKPRPGPHPIEESIPLLILVRDVLGYAETSREARKLIAEGRIKVDGRVRKDYKFPVGAMDVIEIVGADEYYRMIPYPVKYLVPMRIDAEEAKKKICRIENKVTVKGGHVQLNLHDGRNVLIRVEDPRNPVEAQEYKTLGGLLITVPEQEILDYVPFEEGVIAIVKSGRNVGRVGRI 206
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4E_PYRHO (30S ribosomal protein S4e OS=Pyrococcus horikoshii GN=rps4e PE=3 SV=1) HSP 1 Score: 132.88 bits (333), Expect = 1.671e-30 Identity = 70/214 (32.71%), Postives = 119/214 (55.61%), Query Frame = 3 Query: 39 RGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYP---DPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDGGF-NIVHVRD 668 +GP +H KRL+APS W +++ + +A + PGPH +R +PL+ +R+ L YA RE + I+ + VDGKVR D +P G MDV+S+ +TGEH+R++ + G+ +H I EEA K +++ ++ KG L HD P + TV + + +I++ + F+ G + T G+N+ R G I ++ G+ ++V + D Sbjct: 4 KGPKRHLKRLAAPSSWYIERKAYKWAVRPRPGPHNMRTSIPLLYIVRDYLGYAKTAREARKILNEGKFLVDGKVRKDYKFPVGIMDVVSIPETGEHYRVLPNRIGKLVLHPISEEEANIKPLRIRNKRMVKGAKVQLNFHDGTNHLIPLTEKDNYFTSYTVLMKVPEREIMEVLPFEKGAYVFVTQGKNVARKGRIVEIKKFPMGWPDVVTIED 217
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4E_DESK1 (30S ribosomal protein S4e OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=rps4e PE=3 SV=1) HSP 1 Score: 132.109 bits (331), Expect = 2.850e-30 Identity = 71/200 (35.50%), Postives = 111/200 (55.50%), Query Frame = 3 Query: 42 GPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDART--IRYPDPAIKVNDT------VKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVI 617 G +H K ++AP +W + + + K+SPGPH + LPL++ +R+ L YA G+E + ++ + K+DG+VR D +P G MDVI + +++R++ + I EEA +KLC+++ K G L HD R IR DP V DT +K+ I +ILD+V GV+ + +GGRN+GRVG I Sbjct: 5 GGSRHLKAINAPRYWPILRKEYRWVVKSSPGPHPISRSLPLLILVRDMLGYAKTGKEARRLIAEGYFKIDGRVRRDYKFPVGVMDVIEIVGVNKYYRVIPVPTKVLGLIEISREEASFKLCRIENKTTVKNGHIQLNLHDGRNVLIRVNDPRNPVEDTYDTLGVLKLSIPVQQILDYVPLKEGVIAIVSGGRNVGRVGKI 204
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4E_PYRKO (30S ribosomal protein S4e OS=Pyrococcus kodakaraensis GN=rps4e PE=3 SV=1) HSP 1 Score: 131.724 bits (330), Expect = 3.722e-30 Identity = 71/215 (33.02%), Postives = 122/215 (56.74%), Query Frame = 3 Query: 39 RGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDAR----TIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDGGF-NIVHVRD 668 +GP +H KRL+AP+ W + + + +A + SPGPH ++ +PLI +R+ L YA RE + I+ + + VDG+VR D +P G MDV+S+ +TGEH+R++ + G+ +H I EEA+ K ++ ++ KG L HD ++ D A K + TV + + +I+ + F+ G + T G+N+ R G I + G+ ++V + D Sbjct: 4 KGPKRHLKRLAAPTSWYIHRKAYKWAVRPSPGPHSMKTSIPLIYIVRDYLGYAKTAREARKILNEGKILVDGRVRKDYKFPVGIMDVVSIPETGEHYRVLPNRIGKLILHPISEEEAKLKPFRINNKRMVKGAKVQLNLHDGSNHLVSLAEKD-AYKTSYTVIMQVPERQIVKVLPFEVGAYVFVTQGKNVARKGKIVEVRQFPMGWPDVVTIED 217
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4E_PYRAB (30S ribosomal protein S4e OS=Pyrococcus abyssi GN=rps4e PE=3 SV=1) HSP 1 Score: 130.568 bits (327), Expect = 8.293e-30 Identity = 69/214 (32.24%), Postives = 119/214 (55.61%), Query Frame = 3 Query: 39 RGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYP---DPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDGGF-NIVHVRD 668 +GP +H KRL+AP+ W +++ + +A + PGPH +R +PL+ +R+ L YA RE + I+ + VDG+VR D +P G MDV+S+ +TGEH+R++ + G+ +H I EEA K +++ ++ KG L HD P + TV + + +IL+ + F+ G + T G+N+ R G I ++ G+ ++V + D Sbjct: 4 KGPKRHLKRLAAPTSWYIERKAYKWAVRPRPGPHNMRTSIPLLYIVRDYLGYAKTAREARKILNEGKFLVDGRVRKDYKFPVGIMDVVSIPETGEHYRVLPNRIGKLILHPISEEEANIKPLRIRNKRMVKGAKIQLNFHDGTNHLIPLSEKDNYFTSYTVLMKVPEREILEVLPFEKGAYVFVTQGKNVARKGRIVEIKKFPMGWPDVVTIED 217
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4E_METJA (30S ribosomal protein S4e OS=Methanocaldococcus jannaschii GN=rps4e PE=3 SV=1) HSP 1 Score: 130.183 bits (326), Expect = 1.083e-29 Identity = 75/206 (36.41%), Postives = 110/206 (53.40%), Query Frame = 3 Query: 39 RGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDAR--TIRYPDP------AIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRER 632 +GP +H KRL+AP W L + + + PG H + + LPL++ +R+ LKYA N RE K I+ V VDG+VR + P G MDV+SL E++R+++D KGR + E + KLCK+K + KGG L HD R I+ DP K DT+ + I +I + F+ G + TGG+++G I ER Sbjct: 4 KGPKRHLKRLAAPVRWELPRKIHKFTVRPLPGAHPMSESLPLLLIVRDILKYADNAREAKKIIKMGKVLVDGRVRKEEKLPVGLMDVVSLPDANENYRVLFDRKGRIKLK--PTENPDVKLCKIKNKTVIKGGHIQLNLHDGRNIVIKVSDPTKAEEDVYKTGDTLLISIPEQEIKAHIPFEVGKLAYITGGKHVGDFAKIVEIER 207
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4E_PYRFU (30S ribosomal protein S4e OS=Pyrococcus furiosus GN=rps4e PE=3 SV=1) HSP 1 Score: 129.028 bits (323), Expect = 2.413e-29 Identity = 72/215 (33.49%), Postives = 121/215 (56.28%), Query Frame = 3 Query: 39 RGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVN----DTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDGGF-NIVHVRD 668 +GP +H KRL+AP+ W +++ + +A + PGPH +R +PL+ +R+ L YA RE + I+ + VDG+VR D +P G MDV+S+ +TGEH+R++ + G+ +H I +EA K +++ ++ KG L HD T A K N TV + + +IL+ + F+ G + T G+N+ R G I +R G+ ++V + D Sbjct: 4 KGPKRHLKRLAAPTSWYIERKAYKWAVRPRPGPHNMRTSIPLLYIVRDYLGYAKTAREARKILNEGKFLVDGRVRKDYKFPVGIMDVVSIPETGEHYRVLPNRIGKLILHPISEDEAFIKPLRIRNKRMIKGARVQLNFHDG-TNHIVSIAEKDNYFTSYTVLMKVPEREILEVLPFEKGAYVFVTQGKNVARKGRIVEIKRFPMGWPDVVTIED 217
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4E_METM5 (30S ribosomal protein S4e OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rps4e PE=3 SV=1) HSP 1 Score: 127.487 bits (319), Expect = 7.020e-29 Identity = 70/206 (33.98%), Postives = 112/206 (54.37%), Query Frame = 3 Query: 36 MRGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDAR--------TIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRE 629 ++GP KH KRL+AP++W L + + + SPGPH + LPL++ +R+ LKYA N RE K I+ + +DG R + +PAG MDV+S+ + E++ +++D GR ++ + ++A+ KLCK+ + KGG L HD R + + K D+V V I I+ V F G + TGG+++G I E Sbjct: 3 IKGPRKHLKRLAAPANWQLPRKVKAFTVRPSPGPHSMDKSLPLLLVVRDVLKYADNAREAKKIIQTGKILIDGLKRKEYKHPAGLMDVLSIPEMDENYLVLFDESGRISLKK--TDKADAKLCKIVNKTVIKGGHIQLNLHDGRNQIVKVSDATKAEEDVYKTGDSVLVSIPEQSIVGHVAFGEGKLAYVTGGKHVGEFAKIVEVE 206 The following BLAST results are available for this feature:
BLAST of FC930961 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 103
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Sequences
The
following sequences are available for this feature:
EST sequence >FC930961 ID=FC930961; Name=FC930961; organism=Citrus clementina; type=EST; length=713bpback to top |