FC930961
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4E_METMP (30S ribosomal protein S4e OS=Methanococcus maripaludis GN=rps4e PE=3 SV=1) HSP 1 Score: 126.716 bits (317), Expect = 1.197e-28 Identity = 71/206 (34.47%), Postives = 112/206 (54.37%), Query Frame = 3 Query: 36 MRGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDART--IRYPDPA------IKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRE 629 ++GP KH KRL+AP++W L + T+ + SPGPH + LPL++ +R+ LKYA N RE K I+ + +DG R + +PAG MDV+S+ + E + +++D GR ++ + ++ + KLCK+ + KGG L HD R ++ D A K D+V + I I V F G + TGG+++G I E Sbjct: 3 IKGPRKHLKRLAAPANWQLPRKVKTFTVRPSPGPHSMDKSLPLLLVVRDVLKYADNAREAKKIIQTGKILIDGLKRKEYKHPAGLMDVLSIPEMDETYLVLFDESGRISLKK--TDKTDVKLCKIVNKTVVKGGNIQLNLHDGRNQIVKVSDAAKAEEDVYKTGDSVLISIPEQSIAGHVAFGEGKLAYITGGKHVGEFAKIVEVE 206
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4E_METVS (30S ribosomal protein S4e OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rps4e PE=3 SV=1) HSP 1 Score: 126.331 bits (316), Expect = 1.564e-28 Identity = 66/207 (31.88%), Postives = 113/207 (54.59%), Query Frame = 3 Query: 36 MRGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDAR--------TIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRER 632 ++GP KH KRL+AP++W L + T+ + SPGPH + LPL++ +R+ LK A N RE K I+ + +DG R + +P G MDV+S+ + E++ +++D GR ++ + E+ KLCK+ + KGG L HD R ++ + K D+V V + ++ V+F+ G + TGG+++G + E+ Sbjct: 3 IKGPRKHLKRLAAPANWQLPRKERTFTVRPSPGPHSMDKSLPLLLIVRDTLKCADNAREAKKIIQMGKILIDGVKRKEYKHPVGLMDVLSIPELNENYLVLFDENGRISLKK--TEKTGVKLCKIVNKTVIKGGHIQLNLHDGRNQIVKVANALKAEEDIYKTGDSVLVSLPEQAVVGHVEFNEGKLAYITGGKHVGEFAKVVEVEK 207
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4E_METVA (30S ribosomal protein S4e OS=Methanococcus vannielii GN=rps4e PE=3 SV=1) HSP 1 Score: 126.331 bits (316), Expect = 1.564e-28 Identity = 66/207 (31.88%), Postives = 113/207 (54.59%), Query Frame = 3 Query: 36 MRGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDAR--------TIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRER 632 ++GP KH KRL+AP++W L + T+ + SPGPH + LPL++ +R+ LK A N RE K I+ + +DG R + +P G MDV+S+ + E++ +++D GR ++ + E+ KLCK+ + KGG L HD R ++ + K D+V V + ++ V+F+ G + TGG+++G + E+ Sbjct: 3 IKGPRKHLKRLAAPANWQLPRKERTFTVRPSPGPHSMDKSLPLLLIVRDTLKCADNAREAKKIIQMGKILIDGVKRKEYKHPVGLMDVLSIPELNENYLVLFDENGRISLKK--TEKTGVKLCKIVNKTVIKGGHIQLNLHDGRNQIVKVANALKAEEDIYKTGDSVLVSLPEQAVVGHVEFNEGKLAYITGGKHVGEFAKVVEVEK 207
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4E_METST (30S ribosomal protein S4e OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps4e PE=3 SV=1) HSP 1 Score: 125.946 bits (315), Expect = 2.043e-28 Identity = 71/192 (36.98%), Postives = 103/192 (53.65%), Query Frame = 3 Query: 42 GPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVI 617 G KH KR AP W + K + K S GPH L + +PL++ +R+ L A N RE K I+ V VDG R + +P GFMDVIS+ K + FR++ D KGR + I+ +++ +KL K+ KGG L R I D K D + ++I KI D +KF+ G + + TGG+++ VG I Sbjct: 5 GSRKHLKRFKAPKMWPIHKKEEVWTTKTSAGPHALEESIPLVMVLRDILGLAANSREAKIILNNSDVLVDGIPRKNHRFPVGFMDVISIPKINKTFRVLQDYKGRLVLKEIEEKDSTFKLVKILGKTTIKGGKTQLNLEGGRNI-IADDDYKTGDVLLLNIPEQKISDSIKFEEGALGLITGGKHISEVGKI 195
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4E_METM7 (30S ribosomal protein S4e OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rps4e PE=3 SV=1) HSP 1 Score: 125.946 bits (315), Expect = 2.043e-28 Identity = 69/206 (33.50%), Postives = 111/206 (53.88%), Query Frame = 3 Query: 36 MRGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDAR--------TIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRE 629 ++GP KH KRL+AP++W L + + + SPGPH + LPL++ +R+ LKYA N RE K I+ + +DG R + +PAG MDV+S+ + E++ +++D GR ++ + ++ + KLCK+ + KGG L HD R + + K D+V V I I+ V F G + TGG+++G I E Sbjct: 3 IKGPRKHLKRLAAPANWQLPRKVKAFTVRPSPGPHSMDKSLPLLLVVRDVLKYADNAREAKKIIQTGKILIDGLKRKEYKHPAGLMDVLSIPEMDENYLVLFDESGRISLKK--TDKTDAKLCKIVNKTVIKGGHIQLNLHDGRNQIVKVSDATKAEEDVYKTGDSVLVSIPEQSIVGHVAFGEGKLAYVTGGKHVGEFAKIVEVE 206
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4E_METM6 (30S ribosomal protein S4e OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rps4e PE=3 SV=1) HSP 1 Score: 125.561 bits (314), Expect = 2.668e-28 Identity = 69/206 (33.50%), Postives = 111/206 (53.88%), Query Frame = 3 Query: 36 MRGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDAR--------TIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRE 629 ++GP KH KRL+AP++W L + + + SPGPH + LPL++ +R+ LKYA N RE K I+ + +DG R + +PAG MDV+S+ + E++ +++D GR ++ + ++ + KLCK+ + KGG L HD R + + K D+V V I I+ V F G + TGG+++G I E Sbjct: 3 IKGPRKHLKRLAAPANWQLPRKVKAFTVRPSPGPHSMDKSLPLLLVVRDILKYADNAREAKKIIQTGKILIDGLKRKEYKHPAGLMDVLSIPEMDENYLVLFDESGRISLKK--TDKTDAKLCKIVNKTVIKGGHIQLNLHDGRNQIVKVSDATKAEEDVYKTGDSVLVSIPEQSIVGHVAFGEGKLAYITGGKHVGEFAKIVEVE 206
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4E_METKA (30S ribosomal protein S4e OS=Methanopyrus kandleri GN=rps4e PE=3 SV=1) HSP 1 Score: 125.176 bits (313), Expect = 3.484e-28 Identity = 69/215 (32.09%), Postives = 115/215 (53.49%), Query Frame = 3 Query: 42 GPGKHQKRLSAPSHWLLD-KMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDART--IRYPDP------AIKVNDTVKVDI------ATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDG 641 GP +H KRL+AP W + K G +AP+ PGPH + +PL++ +R+ L YA RE + I+ + + VDG VR + +P G MDV+ + +TG+ +R+V + R V I EEA K+C++K +GG + HD + + DP V D++ +++ + K++D + F+ GV + A GR+ G VG + + +G Sbjct: 7 GPKRHVKRLAAPYAWPIPRKEGGKFAPRPYPGPHTMDTSVPLLILVRDMLGYADYAREARKIITRGEIYVDGVVRKEPKFPVGIMDVVEIPRTGDRYRVVMNEHHRLDVVPISEEEARVKVCRIKNKTYVRGGNLQITMHDGKNWLVEIEDPTDPKEDVYSVGDSLVLELPEPDSGESWKVVDHIPFEEGVWVYAMTGRHSGEVGRVVEIQTFEG 221
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4E_META3 (30S ribosomal protein S4e OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rps4e PE=3 SV=1) HSP 1 Score: 124.79 bits (312), Expect = 4.550e-28 Identity = 72/196 (36.73%), Postives = 103/196 (52.55%), Query Frame = 3 Query: 39 RGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDAR--------TIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMG 602 +GP KH KRL AP +W + + + Y + S GPH + LPL++ +R+ L YA N RE K ++ V VDG R D YP G MDVISL E F +V D KGR +++I ++ KLCK++ + KGG L HD R + + K D V + I I+ V+F G + TGG+++G Sbjct: 4 KGPRKHLKRLPAPKNWQISRKTNKYTTRPSAGPHAMGSSLPLLLVLRDLLGYADNAREAKKVIKMGKVLVDGVKRKDHRYPTGLMDVISLPDANESFLVVLDEKGRIKLNKI--KDNTKKLCKIENKTVIKGGHIQLNLHDGRNQIVKLADATKAEEDIYKTGDCVILSIPEQSIVGHVQFGEGKLAYITGGKHVG 197
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4E_KORCO (30S ribosomal protein S4e OS=Korarchaeum cryptofilum (strain OPF8) GN=rps4e PE=3 SV=1) HSP 1 Score: 124.79 bits (312), Expect = 4.550e-28 Identity = 70/216 (32.41%), Postives = 118/216 (54.63%), Query Frame = 3 Query: 42 GPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDGGFNIVHVRDALDNSSL 689 G +H K L+AP ++ + K + K SPGPH + + +PL++ +R+ LK A RE + I+ + + VDGK R D + G MDVIS+ + G ++R+V D + I E++ KL KV + +GG L +HD R +K D++ +++ + ++D ++FD+G ++ T GR GR+G R +G I+ +RD L+N L Sbjct: 5 GGSRHLKSLAAPGYYPIAKRERVWVVKPSPGPHAIDEGIPLLLIVRDMLKLATTAREARRIISMKKILVDGKPRYDYKFQVGLMDVISIPEIGVNYRMVPDPHRFLRLIEIPQSESKMKLVKVIGKRTIRGGRIQLTSHDGRNFLLDGRDVKPGDSLLIELPSQSVIDHLRFDTGSSVLVTRGRMAGRIG------RVEGIGTIIEMRD-LENPEL 213
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4E_AERPE (30S ribosomal protein S4e OS=Aeropyrum pernix GN=rps4e PE=3 SV=2) HSP 1 Score: 124.02 bits (310), Expect = 7.762e-28 Identity = 72/200 (36.00%), Postives = 104/200 (52.00%), Query Frame = 3 Query: 42 GPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTI--RYPDP------AIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVI 617 G + K L+AP W + + +A K PGPH LPL++ +RN L YA RE + ++ + +VDG VR D +P GFMDVI + TGE FR++ F +H I EE + K +++ KGG L HD R I R DP + DT+ + + +I +KF G + + GGRN+GRVGV+ Sbjct: 5 GGQRRLKALAAPRFWPILRKEYKWAVKPRPGPHPAEKSLPLLLIVRNVLGYAQTAREARKLISEGHFRVDGVVRKDYKFPVGFMDVIEVVDTGEKFRMLPYPVKFFKLHPIPEEEGDLKPVRIENKTTVKGGHVQLNLHDGRNILVRVKDPRNPVEDVYRTMDTLLITVPGQEIKGHIKFGEGAIAIIVGGRNVGRVGVV 204 The following BLAST results are available for this feature:
BLAST of FC930961 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 103
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC930961 ID=FC930961; Name=FC930961; organism=Citrus clementina; type=EST; length=713bpback to top |