FC930961

Overview
NameFC930961
Unique NameFC930961
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length713
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15316 contig Ccv1_Contig15316:33..746. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4E_METMP (30S ribosomal protein S4e OS=Methanococcus maripaludis GN=rps4e PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.197e-28
Identity = 71/206 (34.47%), Postives = 112/206 (54.37%), Query Frame = 3
Query:   36 MRGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDART--IRYPDPA------IKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRE 629
            ++GP KH KRL+AP++W L +   T+  + SPGPH +   LPL++ +R+ LKYA N RE K I+    + +DG  R +  +PAG MDV+S+ +  E + +++D  GR ++ +   ++ + KLCK+    + KGG   L  HD R   ++  D A       K  D+V + I    I   V F  G +   TGG+++G    I   E
Sbjct:    3 IKGPRKHLKRLAAPANWQLPRKVKTFTVRPSPGPHSMDKSLPLLLVVRDVLKYADNAREAKKIIQTGKILIDGLKRKEYKHPAGLMDVLSIPEMDETYLVLFDESGRISLKK--TDKTDVKLCKIVNKTVVKGGNIQLNLHDGRNQIVKVSDAAKAEEDVYKTGDSVLISIPEQSIAGHVAFGEGKLAYITGGKHVGEFAKIVEVE 206          
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4E_METVS (30S ribosomal protein S4e OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rps4e PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.564e-28
Identity = 66/207 (31.88%), Postives = 113/207 (54.59%), Query Frame = 3
Query:   36 MRGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDAR--------TIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRER 632
            ++GP KH KRL+AP++W L +   T+  + SPGPH +   LPL++ +R+ LK A N RE K I+    + +DG  R +  +P G MDV+S+ +  E++ +++D  GR ++ +   E+   KLCK+    + KGG   L  HD R         ++  +   K  D+V V +    ++  V+F+ G +   TGG+++G    +   E+
Sbjct:    3 IKGPRKHLKRLAAPANWQLPRKERTFTVRPSPGPHSMDKSLPLLLIVRDTLKCADNAREAKKIIQMGKILIDGVKRKEYKHPVGLMDVLSIPELNENYLVLFDENGRISLKK--TEKTGVKLCKIVNKTVIKGGHIQLNLHDGRNQIVKVANALKAEEDIYKTGDSVLVSLPEQAVVGHVEFNEGKLAYITGGKHVGEFAKVVEVEK 207          
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4E_METVA (30S ribosomal protein S4e OS=Methanococcus vannielii GN=rps4e PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.564e-28
Identity = 66/207 (31.88%), Postives = 113/207 (54.59%), Query Frame = 3
Query:   36 MRGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDAR--------TIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRER 632
            ++GP KH KRL+AP++W L +   T+  + SPGPH +   LPL++ +R+ LK A N RE K I+    + +DG  R +  +P G MDV+S+ +  E++ +++D  GR ++ +   E+   KLCK+    + KGG   L  HD R         ++  +   K  D+V V +    ++  V+F+ G +   TGG+++G    +   E+
Sbjct:    3 IKGPRKHLKRLAAPANWQLPRKERTFTVRPSPGPHSMDKSLPLLLIVRDTLKCADNAREAKKIIQMGKILIDGVKRKEYKHPVGLMDVLSIPELNENYLVLFDENGRISLKK--TEKTGVKLCKIVNKTVIKGGHIQLNLHDGRNQIVKVANALKAEEDIYKTGDSVLVSLPEQAVVGHVEFNEGKLAYITGGKHVGEFAKVVEVEK 207          
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4E_METST (30S ribosomal protein S4e OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps4e PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.043e-28
Identity = 71/192 (36.98%), Postives = 103/192 (53.65%), Query Frame = 3
Query:   42 GPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVI 617
            G  KH KR  AP  W + K    +  K S GPH L + +PL++ +R+ L  A N RE K I+    V VDG  R +  +P GFMDVIS+ K  + FR++ D KGR  +  I+ +++ +KL K+      KGG   L     R I   D   K  D + ++I   KI D +KF+ G + + TGG+++  VG I
Sbjct:    5 GSRKHLKRFKAPKMWPIHKKEEVWTTKTSAGPHALEESIPLVMVLRDILGLAANSREAKIILNNSDVLVDGIPRKNHRFPVGFMDVISIPKINKTFRVLQDYKGRLVLKEIEEKDSTFKLVKILGKTTIKGGKTQLNLEGGRNI-IADDDYKTGDVLLLNIPEQKISDSIKFEEGALGLITGGKHISEVGKI 195          
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4E_METM7 (30S ribosomal protein S4e OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rps4e PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.043e-28
Identity = 69/206 (33.50%), Postives = 111/206 (53.88%), Query Frame = 3
Query:   36 MRGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDAR--------TIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRE 629
            ++GP KH KRL+AP++W L +    +  + SPGPH +   LPL++ +R+ LKYA N RE K I+    + +DG  R +  +PAG MDV+S+ +  E++ +++D  GR ++ +   ++ + KLCK+    + KGG   L  HD R          +  +   K  D+V V I    I+  V F  G +   TGG+++G    I   E
Sbjct:    3 IKGPRKHLKRLAAPANWQLPRKVKAFTVRPSPGPHSMDKSLPLLLVVRDVLKYADNAREAKKIIQTGKILIDGLKRKEYKHPAGLMDVLSIPEMDENYLVLFDESGRISLKK--TDKTDAKLCKIVNKTVIKGGHIQLNLHDGRNQIVKVSDATKAEEDVYKTGDSVLVSIPEQSIVGHVAFGEGKLAYVTGGKHVGEFAKIVEVE 206          
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4E_METM6 (30S ribosomal protein S4e OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rps4e PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.668e-28
Identity = 69/206 (33.50%), Postives = 111/206 (53.88%), Query Frame = 3
Query:   36 MRGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDAR--------TIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRE 629
            ++GP KH KRL+AP++W L +    +  + SPGPH +   LPL++ +R+ LKYA N RE K I+    + +DG  R +  +PAG MDV+S+ +  E++ +++D  GR ++ +   ++ + KLCK+    + KGG   L  HD R          +  +   K  D+V V I    I+  V F  G +   TGG+++G    I   E
Sbjct:    3 IKGPRKHLKRLAAPANWQLPRKVKAFTVRPSPGPHSMDKSLPLLLVVRDILKYADNAREAKKIIQTGKILIDGLKRKEYKHPAGLMDVLSIPEMDENYLVLFDESGRISLKK--TDKTDAKLCKIVNKTVIKGGHIQLNLHDGRNQIVKVSDATKAEEDVYKTGDSVLVSIPEQSIVGHVAFGEGKLAYITGGKHVGEFAKIVEVE 206          
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4E_METKA (30S ribosomal protein S4e OS=Methanopyrus kandleri GN=rps4e PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.484e-28
Identity = 69/215 (32.09%), Postives = 115/215 (53.49%), Query Frame = 3
Query:   42 GPGKHQKRLSAPSHWLLD-KMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDART--IRYPDP------AIKVNDTVKVDI------ATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDG 641
            GP +H KRL+AP  W +  K  G +AP+  PGPH +   +PL++ +R+ L YA   RE + I+ +  + VDG VR +  +P G MDV+ + +TG+ +R+V +   R  V  I  EEA  K+C++K     +GG   +  HD +   +   DP         V D++ +++       + K++D + F+ GV + A  GR+ G VG +   +  +G
Sbjct:    7 GPKRHVKRLAAPYAWPIPRKEGGKFAPRPYPGPHTMDTSVPLLILVRDMLGYADYAREARKIITRGEIYVDGVVRKEPKFPVGIMDVVEIPRTGDRYRVVMNEHHRLDVVPISEEEARVKVCRIKNKTYVRGGNLQITMHDGKNWLVEIEDPTDPKEDVYSVGDSLVLELPEPDSGESWKVVDHIPFEEGVWVYAMTGRHSGEVGRVVEIQTFEG 221          
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4E_META3 (30S ribosomal protein S4e OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rps4e PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.550e-28
Identity = 72/196 (36.73%), Postives = 103/196 (52.55%), Query Frame = 3
Query:   39 RGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDAR--------TIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMG 602
            +GP KH KRL AP +W + + +  Y  + S GPH +   LPL++ +R+ L YA N RE K ++    V VDG  R D  YP G MDVISL    E F +V D KGR  +++I  ++   KLCK++   + KGG   L  HD R          +  +   K  D V + I    I+  V+F  G +   TGG+++G
Sbjct:    4 KGPRKHLKRLPAPKNWQISRKTNKYTTRPSAGPHAMGSSLPLLLVLRDLLGYADNAREAKKVIKMGKVLVDGVKRKDHRYPTGLMDVISLPDANESFLVVLDEKGRIKLNKI--KDNTKKLCKIENKTVIKGGHIQLNLHDGRNQIVKLADATKAEEDIYKTGDCVILSIPEQSIVGHVQFGEGKLAYITGGKHVG 197          
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4E_KORCO (30S ribosomal protein S4e OS=Korarchaeum cryptofilum (strain OPF8) GN=rps4e PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.550e-28
Identity = 70/216 (32.41%), Postives = 118/216 (54.63%), Query Frame = 3
Query:   42 GPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDGGFNIVHVRDALDNSSL 689
            G  +H K L+AP ++ + K    +  K SPGPH + + +PL++ +R+ LK A   RE + I+  + + VDGK R D  +  G MDVIS+ + G ++R+V D      +  I   E++ KL KV   +  +GG   L +HD R        +K  D++ +++ +  ++D ++FD+G  ++ T GR  GR+G      R +G   I+ +RD L+N  L
Sbjct:    5 GGSRHLKSLAAPGYYPIAKRERVWVVKPSPGPHAIDEGIPLLLIVRDMLKLATTAREARRIISMKKILVDGKPRYDYKFQVGLMDVISIPEIGVNYRMVPDPHRFLRLIEIPQSESKMKLVKVIGKRTIRGGRIQLTSHDGRNFLLDGRDVKPGDSLLIELPSQSVIDHLRFDTGSSVLVTRGRMAGRIG------RVEGIGTIIEMRD-LENPEL 213          
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4E_AERPE (30S ribosomal protein S4e OS=Aeropyrum pernix GN=rps4e PE=3 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 7.762e-28
Identity = 72/200 (36.00%), Postives = 104/200 (52.00%), Query Frame = 3
Query:   42 GPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTI--RYPDP------AIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVI 617
            G  +  K L+AP  W + +    +A K  PGPH     LPL++ +RN L YA   RE + ++ +   +VDG VR D  +P GFMDVI +  TGE FR++      F +H I  EE + K  +++     KGG   L  HD R I  R  DP        +  DT+ + +   +I   +KF  G + +  GGRN+GRVGV+
Sbjct:    5 GGQRRLKALAAPRFWPILRKEYKWAVKPRPGPHPAEKSLPLLLIVRNVLGYAQTAREARKLISEGHFRVDGVVRKDYKFPVGFMDVIEVVDTGEKFRMLPYPVKFFKLHPIPEEEGDLKPVRIENKTTVKGGHVQLNLHDGRNILVRVKDPRNPVEDVYRTMDTLLITVPGQEIKGHIKFGEGAIAIIVGGRNVGRVGVV 204          
The following BLAST results are available for this feature:
BLAST of FC930961 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
RS4E_METMP1.197e-2834.4730S ribosomal protein S4e OS=Methanococcus maripal... [more]
RS4E_METVS1.564e-2831.8830S ribosomal protein S4e OS=Methanococcus vanniel... [more]
RS4E_METVA1.564e-2831.8830S ribosomal protein S4e OS=Methanococcus vanniel... [more]
RS4E_METST2.043e-2836.9830S ribosomal protein S4e OS=Methanosphaera stadtm... [more]
RS4E_METM72.043e-2833.5030S ribosomal protein S4e OS=Methanococcus maripal... [more]
RS4E_METM62.668e-2833.5030S ribosomal protein S4e OS=Methanococcus maripal... [more]
RS4E_METKA3.484e-2832.0930S ribosomal protein S4e OS=Methanopyrus kandleri... [more]
RS4E_META34.550e-2836.7330S ribosomal protein S4e OS=Methanococcus aeolicu... [more]
RS4E_KORCO4.550e-2832.4130S ribosomal protein S4e OS=Korarchaeum cryptofil... [more]
RS4E_AERPE7.762e-2836.0030S ribosomal protein S4e OS=Aeropyrum pernix GN=r... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34110H07EF PostHarvP1 Citrus clementina cDNA clone C34110H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930961 ID=FC930961; Name=FC930961; organism=Citrus clementina; type=EST; length=713bp
GGACCACCTAACCTTCAGTCGACAAATCAGTCAAAATGCGCGGCCCCGGA
AAGCACCAGAAGCGCCTCAGCGCGCCCTCGCACTGGCTCTTGGACAAAAT
GTCCGGAACCTACGCGCCCAAGGCCTCCCCCGGTCCCCACAAGCTCCGGG
ACTGCCTTCCCCTGATTGTCTTCATCCGTAACCGTCTCAAGTACGCCCTG
AACGGTCGCGAGGTCAAGGCCATCATGATGCAGCGTCTGGTCAAGGTTGA
CGGCAAGGTCCGCACCGACACCACCTACCCCGCTGGATTCATGGACGTCA
TCTCCCTCGAGAAGACCGGCGAGCACTTCCGTCTCGTTTACGACACCAAG
GGTCGCTTCACCGTCCACCGTATTCAGGCTGAGGAGGCTGAGTACAAGCT
CTGCAAGGTCAAGCGTGTTCAGCTCGGCAAGGGCGGGATCCCATTCTTGG
TTACGCACGATGCGCGAACCATCCGCTACCCCGACCCTGCCATCAAGGTC
AACGACACCGTCAAGGTTGACATTGCCACTGGCAAGATCCTCGACTTCGT
CAAGTTCGACTCCGGTGTTGTCATCATGGCCACTGGTGGTCGCAACATGG
GTCGTGTTGGTGTCATCACTCACCGTGAGCGTCACGACGGTGGTTTCAAC
ATCGTCCACGTTCGCGATGCTCTGGACAACAGTTCGCTCCCGTGAGTCCA
CGTCTTCGTCATG
back to top