FC930961

Overview
NameFC930961
Unique NameFC930961
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length713
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4E_METS3 (30S ribosomal protein S4e OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rps4e PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.031e-27
Identity = 66/193 (34.20%), Postives = 102/193 (52.85%), Query Frame = 3
Query:   42 GPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVIT 620
            G  KH K   AP  W +     T+  K S G H + + L L + IR+ LK A N RE K I+    V VDG+V  D  +P GFMD+I + KTGE +R++ D KGR  +++I  EE + KLCK+      KGG   +  HD + +   +    V D + + +   +I +  +   G  ++ TGG++ G +G ++
Sbjct:    5 GSRKHLKTYKAPKTWPIHPKEDTWTVKPSAGSHSIENSLSLTLVIRDILKLADNSREAKRIINSGNVLVDGRVIKDYKFPVGFMDIIEIPKTGEVYRVLLDKKGRLQLNKI--EENDSKLCKIVNKSTIKGGKIQVNLHDGKNVIIDENDYNVGDVIDLKVPDHEINEVFELKEGACVLITGGKHTGELGTVS 195          
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4E_ARCFU (30S ribosomal protein S4e OS=Archaeoglobus fulgidus GN=rps4e PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.259e-26
Identity = 65/188 (34.57%), Postives = 107/188 (56.91%), Query Frame = 3
Query:   54 HQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVI 617
            HQKRLSAP  + + +    +  K SPGPH  ++ +PL+V +R+ L+ A  GRE + I+    + VDG VR D  +P G  DV+++ K  + +R+++D KGR+    +  E+A+ KL K+    L +GG   L   D   I   +   K  D++ + I   +++D +KF+ G ++M TGG + G +G I
Sbjct:    5 HQKRLSAPKTYKIPRKVSKWVVKPSPGPHN-KEAIPLLVLVRDFLELADTGREARRIISAGEILVDGVVRKDYKFPVGLFDVVTIPKLEKSYRILFDEKGRYIPKEV--EDADLKLYKITNKTLVRGGKVQLNLFDGTNILGSND-YKTKDSILLRIPEKEVVDHLKFEEGALVMITGGTHAGEIGRI 188          
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4E_PYRIL (30S ribosomal protein S4e OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps4e PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.618e-25
Identity = 71/190 (37.37%), Postives = 100/190 (52.63%), Query Frame = 3
Query:   54 HQKRLSAPSHWLLD-KMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPA---IKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVG 611
            H +R +AP  W +  K+ G +  ++SPGPH L   LPL + IR+ LKYA   RE + I+ +  VK+DG +R D  +P G MDV+ +  TGE +R+V D K  + +  I +EEA  KL +V+     KGG   L  HD R +         IK  DTV  D+    I   + F  G   + T G N+G  G
Sbjct:    3 HLRRTTAPYWWPIPRKIGGVWVVRSSPGPHSLAYSLPLAIIIRDVLKYAKTMREARYIISRGYVKIDGVIRKDYKFPVGLMDVVEIVPTGEIYRVVPDEKKYYALIPISSEEATLKLLRVEGKTAVKGGKLQLHFHDGRNLIVSQDVGRHIKTFDTVLYDLQNKNIKMHIPFKLGAYAVVTRGGNVGFSG 192          
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4E_CALMQ (30S ribosomal protein S4e OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rps4e PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.789e-24
Identity = 64/191 (33.51%), Postives = 98/191 (51.31%), Query Frame = 3
Query:   54 HQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDT---VKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVI 617
            H +R ++P  W +++    ++ K SPGPH     +PL V +R+   YA   RE + I+ +  VKVDGKVR D  YP G MDVI L    E++R++ D        RI   EA  K+C+++   + K G   L  HD R I       +  +T   V V++  GK++D+        ++A  G N+GR G +
Sbjct:    3 HLRRSTSPEWWPVERKGAPWSIKPSPGPHPANSSIPLAVLLRDVFHYAKTLREARLIIGKGYVKVDGKVRRDYKYPVGLMDVIELTPINEYYRIIPDPVNFLRPIRIDKSEAGVKVCRIEDKTMVKAGKIQLNLHDGRNIIVDQDEGRKYETLGSVVVNLEDGKLMDYYPMQPNQYVIAFNGVNVGRHGTL 193          
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4E_METAC (30S ribosomal protein S4e OS=Methanosarcina acetivorans GN=rps4e PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.880e-24
Identity = 71/209 (33.97%), Postives = 100/209 (47.85%), Query Frame = 3
Query:   54 HQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITH-RERHDGGFNIVHVRDALD 677
            HQKRLS P  W + K    +     PGPH     LPL + IR+ LK   N RE K I+ +  V VDG  R D  +P G  DVI+L    E +R++ D KGR T+H++  E    KLC++      KGG   L  +D   I          D++ + I   +++  +KF+ G + M  GG++ G  G I   RE      N V +    D
Sbjct:    3 HQKRLSVPKSWKVGKKGNKWISTTRPGPHSQARSLPLGIIIRDILKLVDNSREGKRILSEGKVLVDGIPRKDLRFPVGLFDVITLPLVNEAYRMLQDEKGRLTLHKLN-ETNVNKLCRINNKTTVKGGKFQLNLNDGTNI-IGSNEYGTKDSLILSIPDKQVVKHLKFEVGNLAMVVGGQHSGETGKIMEIREVKSSRHNTVMISGETD 209          
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4E_THENV (30S ribosomal protein S4e OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rps4e PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.515e-23
Identity = 66/193 (34.20%), Postives = 103/193 (53.37%), Query Frame = 3
Query:   54 HQKRLSAPSHWLLD-KMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPA---IKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVIT 620
            H +R ++P  W +  K  G +A + SPGPH L   +PL + IR+ L+YA   RE + I+ +  +KVDG VR +  +P G MDV+ +  TGE +R+V D +  + +  I +EEA+ KL +V+     KGG   +  HD R +  P      IK  D+V  D+    +   +    GV  + T G N+G  G ++
Sbjct:    3 HLRRTTSPYWWPIPRKAGGVWAVRPSPGPHSLAYSIPLALVIRDVLRYAKTLREARMIISRGYIKVDGVVRRNYKFPVGLMDVVEIVPTGEIYRVVPDERSYYALVPITSEEADLKLLRVEGKTAVKGGRLQVHFHDGRNLIMPAETARQIKTFDSVLYDLKARTVRSHIPMRLGVYAVVTHGGNVGFHGQLS 195          
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4E_PYRAR (30S ribosomal protein S4e OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rps4e PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.978e-23
Identity = 71/190 (37.37%), Postives = 96/190 (50.53%), Query Frame = 3
Query:   54 HQKRLSAPSHWLLD-KMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDART-IRYPDPAIKVN--DTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVG 611
            H +R  AP  W +  K  G +  K SPGPH     LPL + IR+ L+YA   RE + I+ +  +KVDG VR D  +P G MDVI +  TGE +R+V D    + +  I + EA  KL +V+      GG   L  HD R  I  PD   K+   DT+  D+    I   +    GVV + T G N+G  G
Sbjct:    3 HLRRSLAPYWWPIPRKAGGVWVVKPSPGPHSFAYSLPLAIVIRDVLRYAKTLREARYIVSRGYIKVDGVVRKDYRFPVGLMDVIEIVPTGEVYRVVPDQDRYYNLLPIPSSEASLKLLRVEGKTTVNGGRLQLHFHDGRNLITSPDMGAKIKTFDTILYDLENKTIKTHIPMKLGVVAVVTHGSNVGFSG 192          
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4E_METBF (30S ribosomal protein S4e OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps4e PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.584e-23
Identity = 70/209 (33.49%), Postives = 98/209 (46.89%), Query Frame = 3
Query:   54 HQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITH-RERHDGGFNIVHVRDALD 677
            HQKRLS P  W   K    +     PGPH     LPL + IR+ LK   N RE K I+ +  V VDG  R D  +P G  DVI+L    E +R+  D KGR  +H++ A     KLC++      KGG   L  +D   I          D++ + +   +I+  ++F  G + M  GG++ G +G IT  RE      N V +    D
Sbjct:    3 HQKRLSIPRSWKAGKKGYKWVSTTRPGPHSQARSLPLGIIIRDILKLVDNSREGKRILSEGKVLVDGIPRKDLRFPVGLFDVITLPLVNETYRMFQDEKGRLALHKLNATNVN-KLCRINNKTTLKGGKVQLNLNDGTNI-LGSNEYSTKDSLILSLPDKQIVKHLQFKVGNLAMVVGGQHSGEIGKITEIREVKSSRHNTVAISGETD 209          
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4E_PYRAE (30S ribosomal protein S4e OS=Pyrobaculum aerophilum GN=rps4e PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.756e-23
Identity = 71/192 (36.98%), Postives = 96/192 (50.00%), Query Frame = 3
Query:   54 HQKRLSAPSHWLLD-KMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDAR---TIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVI 617
            H +R  AP+ W +  K  G +  + SPGPH L   LPL + IR+ LKYA    E + I+ +  VKVDG VR D  +P G MDVI +  TGE +R+V D    + +  I  EEA  KL +V+   + KGG   L  HD R   T       IK  D+V  D+    I   +    GV  +   G N+G  G +
Sbjct:    3 HLRRTLAPAWWPIPRKKGGVWVVRPSPGPHSLAYSLPLALIIRDVLKYAKTMHEARYIISRGYVKVDGVVRRDYKFPVGLMDVIEIVPTGEVYRVVPDADKYYNLLPISTEEAALKLLRVEGKTMVKGGRIQLHFHDGRNLITTLEAGKQIKTFDSVLYDLRNKAIKAHIPLKLGVNAVVIHGSNVGFSGTL 194          
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4E_UNCMA (30S ribosomal protein S4e OS=Uncultured methanogenic archaeon RC-I GN=rps4e PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.312e-22
Identity = 61/190 (32.11%), Postives = 95/190 (50.00%), Query Frame = 3
Query:   48 GKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVI 617
            G H KR++AP  W + + +  +  K  PG H     +PL+V +R+ LK A N  E+K I+ +  V VDGKVR D  Y  G  D IS+     ++R+V    G+F  H +   +A  K+CK+      +GG   L  HD  T+       K  D+V + +   KI     +  G ++M T G++ G +G +
Sbjct:    3 GNHLKRVAAPRTWPITRKTSKWVAKPMPGAHSEERGMPLVVVLRDLLKVADNTSEIKKILHEGKVLVDGKVRKDYRYTVGMFDTISIPAINANYRVVIGMDGKF--HLVPVTDASAKICKIVNKTALRGGKIQLNLHDGTTM-IASNDYKTKDSVILKMPERKIDQHFTYAVGSLVMVTEGKHSGEIGKV 189          
The following BLAST results are available for this feature:
BLAST of FC930961 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
RS4E_METS35.031e-2734.2030S ribosomal protein S4e OS=Methanobrevibacter sm... [more]
RS4E_ARCFU4.259e-2634.5730S ribosomal protein S4e OS=Archaeoglobus fulgidu... [more]
RS4E_PYRIL1.618e-2537.3730S ribosomal protein S4e OS=Pyrobaculum islandicu... [more]
RS4E_CALMQ1.789e-2433.5130S ribosomal protein S4e OS=Caldivirga maquilinge... [more]
RS4E_METAC8.880e-2433.9730S ribosomal protein S4e OS=Methanosarcina acetiv... [more]
RS4E_THENV1.515e-2334.2030S ribosomal protein S4e OS=Thermoproteus neutrop... [more]
RS4E_PYRAR1.978e-2337.3730S ribosomal protein S4e OS=Pyrobaculum arsenatic... [more]
RS4E_METBF2.584e-2333.4930S ribosomal protein S4e OS=Methanosarcina barker... [more]
RS4E_PYRAE5.756e-2336.9830S ribosomal protein S4e OS=Pyrobaculum aerophilu... [more]
RS4E_UNCMA8.312e-2232.1130S ribosomal protein S4e OS=Uncultured methanogen... [more]

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Properties
Property NameValue
Genbank descriptionC34110H07EF PostHarvP1 Citrus clementina cDNA clone C34110H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930961 ID=FC930961; Name=FC930961; organism=Citrus clementina; type=EST; length=713bp
GGACCACCTAACCTTCAGTCGACAAATCAGTCAAAATGCGCGGCCCCGGA
AAGCACCAGAAGCGCCTCAGCGCGCCCTCGCACTGGCTCTTGGACAAAAT
GTCCGGAACCTACGCGCCCAAGGCCTCCCCCGGTCCCCACAAGCTCCGGG
ACTGCCTTCCCCTGATTGTCTTCATCCGTAACCGTCTCAAGTACGCCCTG
AACGGTCGCGAGGTCAAGGCCATCATGATGCAGCGTCTGGTCAAGGTTGA
CGGCAAGGTCCGCACCGACACCACCTACCCCGCTGGATTCATGGACGTCA
TCTCCCTCGAGAAGACCGGCGAGCACTTCCGTCTCGTTTACGACACCAAG
GGTCGCTTCACCGTCCACCGTATTCAGGCTGAGGAGGCTGAGTACAAGCT
CTGCAAGGTCAAGCGTGTTCAGCTCGGCAAGGGCGGGATCCCATTCTTGG
TTACGCACGATGCGCGAACCATCCGCTACCCCGACCCTGCCATCAAGGTC
AACGACACCGTCAAGGTTGACATTGCCACTGGCAAGATCCTCGACTTCGT
CAAGTTCGACTCCGGTGTTGTCATCATGGCCACTGGTGGTCGCAACATGG
GTCGTGTTGGTGTCATCACTCACCGTGAGCGTCACGACGGTGGTTTCAAC
ATCGTCCACGTTCGCGATGCTCTGGACAACAGTTCGCTCCCGTGAGTCCA
CGTCTTCGTCATG
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