FC930961

Overview
NameFC930961
Unique NameFC930961
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length713
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15316 contig Ccv1_Contig15316:33..746. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4E_SULTO (30S ribosomal protein S4e OS=Sulfolobus tokodaii GN=rps4e PE=3 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 8.312e-22
Identity = 62/193 (32.12%), Postives = 97/193 (50.26%), Query Frame = 3
Query:   54 HQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTI-----RYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVI 617
            H  R  AP    L K    +  +A+PGPHKL + +PL + +++ L  A   RE K ++++  + VDG+VR D  +P G MDVIS+  +  +FR+V D        +I  E+A+YK  ++      K G   L   D R I     + P+       T+K++I +  I+   +   G   +  GGRN+G  GVI
Sbjct:    3 HITRFEAPWFLNLSKKEYKWTIRANPGPHKLSESIPLALLLKHYLNVAETTREAKRLVVEGKIMVDGRVRKDYKFPVGLMDVISIPSSDLYFRIVPDNIKYLMPVKISKEDAKYKFVRIVNKTTNKNGNIQLNLEDGRNILIPKEKVPEMNYPTLTTLKIEIPSQNIIKSYELSEGKYAIIIGGRNVGLHGVI 195          
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4E_METMA (30S ribosomal protein S4e OS=Methanosarcina mazei GN=rps4e PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.086e-21
Identity = 68/209 (32.54%), Postives = 99/209 (47.37%), Query Frame = 3
Query:   54 HQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITH-RERHDGGFNIVHVRDALD 677
            HQKRLS P  W + +    +     PGPH     LPL + IR+ LK   N RE K I+ +  V VDG  R D  +P G  DVI+L    E +R++ D KGR  ++++  E    KLC++      KGG   L  +D   I   +      D++ + I    ++  +KF+ G + M  GG++ G  G I   RE      N V +    D
Sbjct:    3 HQKRLSVPKSWKVGRKGNKWISTTRPGPHSQARSLPLGLIIRDVLKLVDNNREGKRILSEGKVLVDGISRKDLRFPVGLFDVITLPLVNEAYRMLQDEKGRLVLYKLN-ETNVNKLCRINNKTTVKGGKIQLNLNDGTNILGSND-YGTKDSLILSIPDKHVVKHLKFEVGNLAMVIGGQHSGETGKIMEIREVKSSRHNTVMISGETD 209          
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4E_PYRCJ (30S ribosomal protein S4e OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rps4e PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.158e-21
Identity = 67/190 (35.26%), Postives = 95/190 (50.00%), Query Frame = 3
Query:   54 HQKRLSAPSHWLLD-KMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPA---IKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVG 611
            H ++  AP  W +  K  G +A + S GPH L   LPL V +R+ L+YA   RE + I+ +  +KVDG VR D  +P G MDV+ +  TGE +R+V D    + +  I + EA  K  +V+      GG   L  HD R +  P      IK  DTV  D+    I   +    G + + T G N+G VG
Sbjct:    3 HLRKSLAPYWWPIPRKAGGVWAVRPSTGPHSLEYSLPLAVVVRDVLRYAKTLREARYIISRGYIKVDGVVRKDYKFPIGLMDVVEIVPTGEIYRVVPDEAKYYDLKPIPSSEAALKPLRVEGKTAVSGGRIQLHFHDGRNLILPPDVGRQIKTFDTVVYDLENKAIKTHLPLRLGQLAVVTHGGNIGFVG 192          
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4E_SULIY (30S ribosomal protein S4e OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=rps4e PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.388e-21
Identity = 61/191 (31.94%), Postives = 93/191 (48.69%), Query Frame = 3
Query:   54 HQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTI---RYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVI 617
            H  R   P   ++ K    +  + + GPH +   +PL V IR+ LK A   RE K I+    V VDGKVR D  YP G MD++S+     +FR++ D      + +I A+EA YK  ++      KGG   L   D R I   +    + K   T+K+++ +  I+D      G   +  GG+N+G  GV+
Sbjct:    3 HITRFETPWFLVISKKQYKWTVRPNAGPHPIEKSIPLAVVIRDYLKLAETVREAKHIIFDGKVLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVIPDNVRFMRLSKISADEAHYKYVRIMNKTTVKGGSIQLNLEDGRNILVDKETAKSFKTLMTLKIELPSQNIVDSFIISEGSYAIFVGGKNVGIHGVV 193          
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4E_SULIN (30S ribosomal protein S4e OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rps4e PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.388e-21
Identity = 61/191 (31.94%), Postives = 93/191 (48.69%), Query Frame = 3
Query:   54 HQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTI---RYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVI 617
            H  R   P   ++ K    +  + + GPH +   +PL V IR+ LK A   RE K I+    V VDGKVR D  YP G MD++S+     +FR++ D      + +I A+EA YK  ++      KGG   L   D R I   +    + K   T+K+++ +  I+D      G   +  GG+N+G  GV+
Sbjct:    3 HITRFETPWFLVISKKQYKWTVRPNAGPHPIEKSIPLAVVIRDYLKLAETVREAKHIIFDGKVLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVIPDNVRFMRLSKISADEAHYKYVRIMNKTTVKGGSIQLNLEDGRNILVDKETAKSFKTLMTLKIELPSQNIVDSFIISEGSYAIFVGGKNVGIHGVV 193          
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4E_SULIM (30S ribosomal protein S4e OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=rps4e PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.388e-21
Identity = 61/191 (31.94%), Postives = 93/191 (48.69%), Query Frame = 3
Query:   54 HQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTI---RYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVI 617
            H  R   P   ++ K    +  + + GPH +   +PL V IR+ LK A   RE K I+    V VDGKVR D  YP G MD++S+     +FR++ D      + +I A+EA YK  ++      KGG   L   D R I   +    + K   T+K+++ +  I+D      G   +  GG+N+G  GV+
Sbjct:    3 HITRFETPWFLVISKKQYKWTVRPNAGPHPIEKSIPLAVVIRDYLKLAETVREAKHIIFDGKVLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVIPDNVRFMRLSKISADEAHYKYVRIMNKTTVKGGSIQLNLEDGRNILVDKETAKSFKTLMTLKIELPSQNIVDSFIISEGSYAIFVGGKNVGIHGVV 193          
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4E_SULIL (30S ribosomal protein S4e OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=rps4e PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.388e-21
Identity = 61/191 (31.94%), Postives = 93/191 (48.69%), Query Frame = 3
Query:   54 HQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTI---RYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVI 617
            H  R   P   ++ K    +  + + GPH +   +PL V IR+ LK A   RE K I+    V VDGKVR D  YP G MD++S+     +FR++ D      + +I A+EA YK  ++      KGG   L   D R I   +    + K   T+K+++ +  I+D      G   +  GG+N+G  GV+
Sbjct:    3 HITRFETPWFLVISKKQYKWTVRPNAGPHPIEKSIPLAVVIRDYLKLAETVREAKHIIFDGKVLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVIPDNVRFMRLSKISADEAHYKYVRIMNKTTVKGGSIQLNLEDGRNILVDKETAKSFKTLMTLKIELPSQNIVDSFIISEGSYAIFVGGKNVGIHGVV 193          
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4E_SULIK (30S ribosomal protein S4e OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=rps4e PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.388e-21
Identity = 61/191 (31.94%), Postives = 93/191 (48.69%), Query Frame = 3
Query:   54 HQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTI---RYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVI 617
            H  R   P   ++ K    +  + + GPH +   +PL V IR+ LK A   RE K I+    V VDGKVR D  YP G MD++S+     +FR++ D      + +I A+EA YK  ++      KGG   L   D R I   +    + K   T+K+++ +  I+D      G   +  GG+N+G  GV+
Sbjct:    3 HITRFETPWFLVISKKQYKWTVRPNAGPHPIEKSIPLAVVIRDYLKLAETVREAKHIIFDGKVLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVIPDNVRFMRLSKISADEAHYKYVRIMNKTTVKGGSIQLNLEDGRNILVDKETAKSFKTLMTLKIELPSQNIVDSFIISEGSYAIFVGGKNVGIHGVV 193          
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4E_SULIA (30S ribosomal protein S4e OS=Sulfolobus islandicus (strain M.16.27) GN=rps4e PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.388e-21
Identity = 61/191 (31.94%), Postives = 93/191 (48.69%), Query Frame = 3
Query:   54 HQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTI---RYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVI 617
            H  R   P   ++ K    +  + + GPH +   +PL V IR+ LK A   RE K I+    V VDGKVR D  YP G MD++S+     +FR++ D      + +I A+EA YK  ++      KGG   L   D R I   +    + K   T+K+++ +  I+D      G   +  GG+N+G  GV+
Sbjct:    3 HITRFETPWFLVISKKQYKWTVRPNAGPHPIEKSIPLAVVIRDYLKLAETVREAKHIIFDGKVLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVIPDNVRFMRLSKISADEAHYKYVRIMNKTTVKGGSIQLNLEDGRNILVDKETAKSFKTLMTLKIELPSQNIVDSFIISEGSYAIFVGGKNVGIHGVV 193          
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4E_METHJ (30S ribosomal protein S4e OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps4e PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.388e-21
Identity = 58/196 (29.59%), Postives = 102/196 (52.04%), Query Frame = 3
Query:   48 GKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATG---KILDFVKFDSGVVIMATGGRNMGRVG-VITH 623
            G H KR+ +P  W + + +  +  K SPGPH  ++ LP++V+ R+++    N +E K ++ +R + V+G+         G  D++S+ K+G+H+R++ D KGR     I  + A  +L K+    + KGG   L   D   +   D   K  D++ + +  G   +I+D   F  G + M  GG++ G VG +I H
Sbjct:    2 GHHLKRVVSPKSWGIPRKTDKFVTKTSPGPHN-KNALPIVVWARDQMGIVRNMKEAKHVLREREIIVNGRPVRHPDMGIGIFDIVSIPKSGKHYRILRDKKGRHVTIPIDEDAASSRLVKITNKTIVKGGRIQLNLRDGSNV-LTDKQYKSGDSIVLSLKEGQKNEIIDHFPFQPGNMAMIIGGKHSGVVGRIIEH 195          
The following BLAST results are available for this feature:
BLAST of FC930961 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
RS4E_SULTO8.312e-2232.1230S ribosomal protein S4e OS=Sulfolobus tokodaii G... [more]
RS4E_METMA1.086e-2132.5430S ribosomal protein S4e OS=Methanosarcina mazei ... [more]
RS4E_PYRCJ3.158e-2135.2630S ribosomal protein S4e OS=Pyrobaculum calidifon... [more]
RS4E_SULIY5.388e-2131.9430S ribosomal protein S4e OS=Sulfolobus islandicus... [more]
RS4E_SULIN5.388e-2131.9430S ribosomal protein S4e OS=Sulfolobus islandicus... [more]
RS4E_SULIM5.388e-2131.9430S ribosomal protein S4e OS=Sulfolobus islandicus... [more]
RS4E_SULIL5.388e-2131.9430S ribosomal protein S4e OS=Sulfolobus islandicus... [more]
RS4E_SULIK5.388e-2131.9430S ribosomal protein S4e OS=Sulfolobus islandicus... [more]
RS4E_SULIA5.388e-2131.9430S ribosomal protein S4e OS=Sulfolobus islandicus... [more]
RS4E_METHJ5.388e-2129.5930S ribosomal protein S4e OS=Methanospirillum hung... [more]

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Properties
Property NameValue
Genbank descriptionC34110H07EF PostHarvP1 Citrus clementina cDNA clone C34110H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930961 ID=FC930961; Name=FC930961; organism=Citrus clementina; type=EST; length=713bp
GGACCACCTAACCTTCAGTCGACAAATCAGTCAAAATGCGCGGCCCCGGA
AAGCACCAGAAGCGCCTCAGCGCGCCCTCGCACTGGCTCTTGGACAAAAT
GTCCGGAACCTACGCGCCCAAGGCCTCCCCCGGTCCCCACAAGCTCCGGG
ACTGCCTTCCCCTGATTGTCTTCATCCGTAACCGTCTCAAGTACGCCCTG
AACGGTCGCGAGGTCAAGGCCATCATGATGCAGCGTCTGGTCAAGGTTGA
CGGCAAGGTCCGCACCGACACCACCTACCCCGCTGGATTCATGGACGTCA
TCTCCCTCGAGAAGACCGGCGAGCACTTCCGTCTCGTTTACGACACCAAG
GGTCGCTTCACCGTCCACCGTATTCAGGCTGAGGAGGCTGAGTACAAGCT
CTGCAAGGTCAAGCGTGTTCAGCTCGGCAAGGGCGGGATCCCATTCTTGG
TTACGCACGATGCGCGAACCATCCGCTACCCCGACCCTGCCATCAAGGTC
AACGACACCGTCAAGGTTGACATTGCCACTGGCAAGATCCTCGACTTCGT
CAAGTTCGACTCCGGTGTTGTCATCATGGCCACTGGTGGTCGCAACATGG
GTCGTGTTGGTGTCATCACTCACCGTGAGCGTCACGACGGTGGTTTCAAC
ATCGTCCACGTTCGCGATGCTCTGGACAACAGTTCGCTCCCGTGAGTCCA
CGTCTTCGTCATG
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