FC930961
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4E_SULTO (30S ribosomal protein S4e OS=Sulfolobus tokodaii GN=rps4e PE=3 SV=2) HSP 1 Score: 103.99 bits (258), Expect = 8.312e-22 Identity = 62/193 (32.12%), Postives = 97/193 (50.26%), Query Frame = 3 Query: 54 HQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTI-----RYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVI 617 H R AP L K + +A+PGPHKL + +PL + +++ L A RE K ++++ + VDG+VR D +P G MDVIS+ + +FR+V D +I E+A+YK ++ K G L D R I + P+ T+K++I + I+ + G + GGRN+G GVI Sbjct: 3 HITRFEAPWFLNLSKKEYKWTIRANPGPHKLSESIPLALLLKHYLNVAETTREAKRLVVEGKIMVDGRVRKDYKFPVGLMDVISIPSSDLYFRIVPDNIKYLMPVKISKEDAKYKFVRIVNKTTNKNGNIQLNLEDGRNILIPKEKVPEMNYPTLTTLKIEIPSQNIIKSYELSEGKYAIIIGGRNVGLHGVI 195
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4E_METMA (30S ribosomal protein S4e OS=Methanosarcina mazei GN=rps4e PE=3 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 1.086e-21 Identity = 68/209 (32.54%), Postives = 99/209 (47.37%), Query Frame = 3 Query: 54 HQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITH-RERHDGGFNIVHVRDALD 677 HQKRLS P W + + + PGPH LPL + IR+ LK N RE K I+ + V VDG R D +P G DVI+L E +R++ D KGR ++++ E KLC++ KGG L +D I + D++ + I ++ +KF+ G + M GG++ G G I RE N V + D Sbjct: 3 HQKRLSVPKSWKVGRKGNKWISTTRPGPHSQARSLPLGLIIRDVLKLVDNNREGKRILSEGKVLVDGISRKDLRFPVGLFDVITLPLVNEAYRMLQDEKGRLVLYKLN-ETNVNKLCRINNKTTVKGGKIQLNLNDGTNILGSND-YGTKDSLILSIPDKHVVKHLKFEVGNLAMVIGGQHSGETGKIMEIREVKSSRHNTVMISGETD 209
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4E_PYRCJ (30S ribosomal protein S4e OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rps4e PE=3 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 3.158e-21 Identity = 67/190 (35.26%), Postives = 95/190 (50.00%), Query Frame = 3 Query: 54 HQKRLSAPSHWLLD-KMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPA---IKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVG 611 H ++ AP W + K G +A + S GPH L LPL V +R+ L+YA RE + I+ + +KVDG VR D +P G MDV+ + TGE +R+V D + + I + EA K +V+ GG L HD R + P IK DTV D+ I + G + + T G N+G VG Sbjct: 3 HLRKSLAPYWWPIPRKAGGVWAVRPSTGPHSLEYSLPLAVVVRDVLRYAKTLREARYIISRGYIKVDGVVRKDYKFPIGLMDVVEIVPTGEIYRVVPDEAKYYDLKPIPSSEAALKPLRVEGKTAVSGGRIQLHFHDGRNLILPPDVGRQIKTFDTVVYDLENKAIKTHLPLRLGQLAVVTHGGNIGFVG 192
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4E_SULIY (30S ribosomal protein S4e OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=rps4e PE=3 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 5.388e-21 Identity = 61/191 (31.94%), Postives = 93/191 (48.69%), Query Frame = 3 Query: 54 HQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTI---RYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVI 617 H R P ++ K + + + GPH + +PL V IR+ LK A RE K I+ V VDGKVR D YP G MD++S+ +FR++ D + +I A+EA YK ++ KGG L D R I + + K T+K+++ + I+D G + GG+N+G GV+ Sbjct: 3 HITRFETPWFLVISKKQYKWTVRPNAGPHPIEKSIPLAVVIRDYLKLAETVREAKHIIFDGKVLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVIPDNVRFMRLSKISADEAHYKYVRIMNKTTVKGGSIQLNLEDGRNILVDKETAKSFKTLMTLKIELPSQNIVDSFIISEGSYAIFVGGKNVGIHGVV 193
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4E_SULIN (30S ribosomal protein S4e OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rps4e PE=3 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 5.388e-21 Identity = 61/191 (31.94%), Postives = 93/191 (48.69%), Query Frame = 3 Query: 54 HQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTI---RYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVI 617 H R P ++ K + + + GPH + +PL V IR+ LK A RE K I+ V VDGKVR D YP G MD++S+ +FR++ D + +I A+EA YK ++ KGG L D R I + + K T+K+++ + I+D G + GG+N+G GV+ Sbjct: 3 HITRFETPWFLVISKKQYKWTVRPNAGPHPIEKSIPLAVVIRDYLKLAETVREAKHIIFDGKVLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVIPDNVRFMRLSKISADEAHYKYVRIMNKTTVKGGSIQLNLEDGRNILVDKETAKSFKTLMTLKIELPSQNIVDSFIISEGSYAIFVGGKNVGIHGVV 193
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4E_SULIM (30S ribosomal protein S4e OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=rps4e PE=3 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 5.388e-21 Identity = 61/191 (31.94%), Postives = 93/191 (48.69%), Query Frame = 3 Query: 54 HQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTI---RYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVI 617 H R P ++ K + + + GPH + +PL V IR+ LK A RE K I+ V VDGKVR D YP G MD++S+ +FR++ D + +I A+EA YK ++ KGG L D R I + + K T+K+++ + I+D G + GG+N+G GV+ Sbjct: 3 HITRFETPWFLVISKKQYKWTVRPNAGPHPIEKSIPLAVVIRDYLKLAETVREAKHIIFDGKVLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVIPDNVRFMRLSKISADEAHYKYVRIMNKTTVKGGSIQLNLEDGRNILVDKETAKSFKTLMTLKIELPSQNIVDSFIISEGSYAIFVGGKNVGIHGVV 193
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4E_SULIL (30S ribosomal protein S4e OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=rps4e PE=3 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 5.388e-21 Identity = 61/191 (31.94%), Postives = 93/191 (48.69%), Query Frame = 3 Query: 54 HQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTI---RYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVI 617 H R P ++ K + + + GPH + +PL V IR+ LK A RE K I+ V VDGKVR D YP G MD++S+ +FR++ D + +I A+EA YK ++ KGG L D R I + + K T+K+++ + I+D G + GG+N+G GV+ Sbjct: 3 HITRFETPWFLVISKKQYKWTVRPNAGPHPIEKSIPLAVVIRDYLKLAETVREAKHIIFDGKVLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVIPDNVRFMRLSKISADEAHYKYVRIMNKTTVKGGSIQLNLEDGRNILVDKETAKSFKTLMTLKIELPSQNIVDSFIISEGSYAIFVGGKNVGIHGVV 193
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4E_SULIK (30S ribosomal protein S4e OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=rps4e PE=3 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 5.388e-21 Identity = 61/191 (31.94%), Postives = 93/191 (48.69%), Query Frame = 3 Query: 54 HQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTI---RYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVI 617 H R P ++ K + + + GPH + +PL V IR+ LK A RE K I+ V VDGKVR D YP G MD++S+ +FR++ D + +I A+EA YK ++ KGG L D R I + + K T+K+++ + I+D G + GG+N+G GV+ Sbjct: 3 HITRFETPWFLVISKKQYKWTVRPNAGPHPIEKSIPLAVVIRDYLKLAETVREAKHIIFDGKVLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVIPDNVRFMRLSKISADEAHYKYVRIMNKTTVKGGSIQLNLEDGRNILVDKETAKSFKTLMTLKIELPSQNIVDSFIISEGSYAIFVGGKNVGIHGVV 193
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4E_SULIA (30S ribosomal protein S4e OS=Sulfolobus islandicus (strain M.16.27) GN=rps4e PE=3 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 5.388e-21 Identity = 61/191 (31.94%), Postives = 93/191 (48.69%), Query Frame = 3 Query: 54 HQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTI---RYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVI 617 H R P ++ K + + + GPH + +PL V IR+ LK A RE K I+ V VDGKVR D YP G MD++S+ +FR++ D + +I A+EA YK ++ KGG L D R I + + K T+K+++ + I+D G + GG+N+G GV+ Sbjct: 3 HITRFETPWFLVISKKQYKWTVRPNAGPHPIEKSIPLAVVIRDYLKLAETVREAKHIIFDGKVLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVIPDNVRFMRLSKISADEAHYKYVRIMNKTTVKGGSIQLNLEDGRNILVDKETAKSFKTLMTLKIELPSQNIVDSFIISEGSYAIFVGGKNVGIHGVV 193
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4E_METHJ (30S ribosomal protein S4e OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps4e PE=3 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 5.388e-21 Identity = 58/196 (29.59%), Postives = 102/196 (52.04%), Query Frame = 3 Query: 48 GKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATG---KILDFVKFDSGVVIMATGGRNMGRVG-VITH 623 G H KR+ +P W + + + + K SPGPH ++ LP++V+ R+++ N +E K ++ +R + V+G+ G D++S+ K+G+H+R++ D KGR I + A +L K+ + KGG L D + D K D++ + + G +I+D F G + M GG++ G VG +I H Sbjct: 2 GHHLKRVVSPKSWGIPRKTDKFVTKTSPGPHN-KNALPIVVWARDQMGIVRNMKEAKHVLREREIIVNGRPVRHPDMGIGIFDIVSIPKSGKHYRILRDKKGRHVTIPIDEDAASSRLVKITNKTIVKGGRIQLNLRDGSNV-LTDKQYKSGDSIVLSLKEGQKNEIIDHFPFQPGNMAMIIGGKHSGVVGRIIEH 195 The following BLAST results are available for this feature:
BLAST of FC930961 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 103
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Sequences
The
following sequences are available for this feature:
EST sequence >FC930961 ID=FC930961; Name=FC930961; organism=Citrus clementina; type=EST; length=713bpback to top |