FC930961
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4E_THEAC (30S ribosomal protein S4e OS=Thermoplasma acidophilum GN=rps4e PE=1 SV=2) HSP 1 Score: 100.523 bits (249), Expect = 9.190e-21 Identity = 69/219 (31.51%), Postives = 103/219 (47.03%), Query Frame = 3 Query: 60 KRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDG-GFNIVHVRDALDNSSLP*VHVFVM 713 KRL + + + + P +PG H + L+ IR+ LK + RE I+ LVKVDGK + + GFMDVI E GE +R+VY+ +G + + E A KL KV+ + G L THD RT D + KV D V + KI + +K G T G ++ + G I+ E +G N+VH ++ HVF++ Sbjct: 6 KRLMVSRQVKIPRKTYFWGPTPNPGMHPKDQSVTLLSIIRDYLKLSDKEREAARILANGLVKVDGKTVREKKFAVGFMDVI--EINGESYRVVYNDQGALVLMKETKERASMKLLKVRSKVIAPGNRIQLGTHDGRTFITDDKSKKVGDVWAVSVPDMKISEIIKMQPGNKAYITAGSHVNQTGTISKIEAKEGSSANLVHFQEGFSTIK---DHVFMI 219
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4E_PICTO (30S ribosomal protein S4e OS=Picrophilus torridus GN=rps4e PE=3 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 9.190e-21 Identity = 70/219 (31.96%), Postives = 107/219 (48.86%), Query Frame = 3 Query: 60 KRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRE-RHDGGFNIVHVRDALDNSSLP*VHVFVM 713 K + AP + + S +A + PG HK +PL++ +R+ LK RE+ I+ LV VDGKV + GFMD +++ +G + + YD KG+ + E KL +VK KGG + HD T+ IK D+V V I +I+D +KF G + TGG ++G + I E + G N+VH+ + S +VFVM Sbjct: 6 KIMMAPRKLKIARKSRFWAVNSLPGSHKKDSSIPLLIALRDYLKLGDKEREITRILTNSLVMVDGKVVKERRRGIGFMDTLTV--SGNDYLVSYDRKGKLVILPKPGETKGLKLLRVKGKTYVKGGRIQISFHDGSTMVTDRKDIKNGDSVLVKIPKKEIVDVLKFAPGNRVFITGGSHVGEIATIKSIEIKSSSGENMVHMNEGFSTVS---SYVFVM 219
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4E_THEVO (30S ribosomal protein S4e OS=Thermoplasma volcanium GN=rps4e PE=3 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 1.568e-20 Identity = 69/219 (31.51%), Postives = 102/219 (46.58%), Query Frame = 3 Query: 60 KRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRE-RHDGGFNIVHVRDALDNSSLP*VHVFVM 713 KRL P + + + + P PG HK + L+ IR+ L+ + RE I+ LVKVDGKV + + GFMDVI E +GE +R+VY+ +G + + A K +VK + G L HD R + D +I V D V + KI + +K G TGG ++G G I+ E + N+VH + HVFV+ Sbjct: 6 KRLMVPRTVKIPRKTYFWGPTPLPGRHKADHSVTLLTIIRDYLRLSDKEREATRILANGLVKVDGKVVKERKFGVGFMDVI--EISGESYRVVYNNQGALVLVSESKDRANMKPLQVKNKVIAPGNKIQLGFHDGRVMVTEDRSISVGDVVIASLPDMKITEIIKMQPGNKAFITGGSHVGETGTISKIEIKESSSANLVHFDEGFTTVK---DHVFVI 219
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4E_HALLT (30S ribosomal protein S4e OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rps4e PE=3 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 2.674e-20 Identity = 60/211 (28.44%), Postives = 104/211 (49.29%), Query Frame = 3 Query: 51 KHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRY-PDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDG-GFNIVHVRDALD 677 +HQKRL+ P+ W +++ + T+ KA GPH +PL+V +R+ L Y + +E + + V V+G +D P G D+++ + GE FR+ D GR + + E A +L K+ + GG L HD + D D++ VD + ++ +++ G ++ A G++ GR+G + + G G N V V D D Sbjct: 3 RHQKRLAVPNSWPVERKTNTFTVKAGAGPHGEAG-VPLVVLLRDVLGYVDSTKEARYALNNDSVLVNGDAISDEQRPIGMFDILAFPERGEFFRVFPDEGGRLALTSVDEEAAGSRLGKITNKSVVPGGDAQLTLHDGTNVLVDADTEYDTKDSIVVDNESKDVVAHFEYEEGALVTAVAGQHAGRIGEVADIDVTLGSGSNTVFVGDDED 212
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4E_METS5 (30S ribosomal protein S4e OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rps4e PE=3 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 3.492e-20 Identity = 62/191 (32.46%), Postives = 93/191 (48.69%), Query Frame = 3 Query: 54 HQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPA-----IKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVG 611 H RL AP K + +ASPGPH L +PL + +R+ L + + +E K I+ V VDG+VR D YP G MDVI++ + R+V D +I EE+++KL ++ L KGG+ D R + + + T+K+ I +IL F V +MA GG+N G +G Sbjct: 3 HITRLEAPWFLRASKKEYKWTVRASPGPHPLGKSIPLGLLLRDYLAFTSSLKESKKIISDGKVLVDGRVRRDYKYPVGLMDVIAIPHADLYLRIVPDRARLLKPVKISEEESKFKLVRLLNKTLVKGGLLQFNLEDGRNLLISKESTEMFKLPTLTTLKISIPNQEILGVYGFKENVYVMAVGGKNAGIIG 193
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4_BIGNA (40S ribosomal protein S4 OS=Bigelowiella natans GN=RPS4 PE=3 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 4.561e-20 Identity = 57/217 (26.27%), Postives = 105/217 (48.39%), Query Frame = 3 Query: 39 RGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDGGFNIVHVRDALDNSSL 689 +G KHQKR+S+ + K G + K S GPH + L+ I+ A N +E + ++ + V+GK +P MD IS +H+R++ G+ TV+ I E + K+CKV ++ ++T D R ++ IKV D++ + +I+ +KF+ G + + T G+++G + VI + ++H+ + +D L Sbjct: 3 KGIKKHQKRISSNTMIKYKKKLGIFNTKISSGPHSKVKSVSLLNIIKKFFHLADNNQEAQKVVKTGFLYVNGKKCLSHKFPISLMDTISFPLANKHYRVLLSKAGKLTVYEINQNEKDLKICKVIKIINASSKNKIIITDDLRELKINYAKIKVEDSLLIKTINDEIVYALKFEVGSLCLITRGKHLGTIAVIKEIRKTKSLRKMIHL-EKIDGKKL 218
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4E_HALSA (30S ribosomal protein S4e OS=Halobacterium salinarium GN=rps4e PE=3 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 1.327e-19 Identity = 63/206 (30.58%), Postives = 98/206 (47.57%), Query Frame = 3 Query: 54 HQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDG-GFNIVHVRD 668 HQKRLS P W +++ + T+ KA GPH +PL+V +R+ L+Y + E + + V V+G D P G D+++ E++R+ D GR + I A+ A KL KV GG L HD + + A D+V VD T +I+ +++ G ++ A G++ G +G I G N V V D Sbjct: 4 HQKRLSVPKSWPVERKTETFTAKAGAGPHG-ESGVPLVVVLRDVLEYVDDTSEAQYAINTDGVLVNGDSVGDVNRPIGMFDILAFPDRDEYYRVFPDEGGRLGLTEIDADAAGSKLNKVTDKTTVSGGRTQLNFHDGSNLALDEDAYAGGDSVVVDTDTNEIVAHFQYEEGALVTAVAGQHAGDIGEIAEINVQPGSASNTVRVDD 208
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4E_HALS3 (30S ribosomal protein S4e OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rps4e PE=3 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 1.327e-19 Identity = 63/206 (30.58%), Postives = 98/206 (47.57%), Query Frame = 3 Query: 54 HQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDG-GFNIVHVRD 668 HQKRLS P W +++ + T+ KA GPH +PL+V +R+ L+Y + E + + V V+G D P G D+++ E++R+ D GR + I A+ A KL KV GG L HD + + A D+V VD T +I+ +++ G ++ A G++ G +G I G N V V D Sbjct: 4 HQKRLSVPKSWPVERKTETFTAKAGAGPHG-ESGVPLVVVLRDVLEYVDDTSEAQYAINTDGVLVNGDSVGDVNRPIGMFDILAFPDRDEYYRVFPDEGGRLGLTEIDADAAGSKLNKVTDKTTVSGGRTQLNFHDGSNLALDEDAYAGGDSVVVDTDTNEIVAHFQYEEGALVTAVAGQHAGDIGEIAEINVQPGSASNTVRVDD 208
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4E_NATPD (30S ribosomal protein S4e OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps4e PE=3 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 2.264e-19 Identity = 54/189 (28.57%), Postives = 96/189 (50.79%), Query Frame = 3 Query: 54 HQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPD-PAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVI 617 HQKRL+ P W +++ Y KA+ GPH + +PL++ +R+ L Y + +E + + Q + ++G +D P G D+++ ++ E++R+ D GR ++ I + A KL K+ GG L HD T+ D A ND++ V +I+ ++ G ++ A G + GR+G I Sbjct: 4 HQKRLAVPKSWPVERKEEAYTTKAAAGPHG-EEGVPLLIVLRDVLGYVDSKKEARYALEQDSILINGTAVSDERRPVGMFDILAFDEREEYYRIFPDEGGRLSLTPIDEDAAGSKLGKIVGKTQVAGGDTQLSLHDGETLLVEDATAYDTNDSIVVSNDGEEIVAHFTYEEGALVTAVSGAHAGRIGTI 191
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4E_HALMA (30S ribosomal protein S4E OS=Haloarcula marismortui GN=rps4e PE=1 SV=3) HSP 1 Score: 95.9005 bits (237), Expect = 2.264e-19 Identity = 55/189 (29.10%), Postives = 96/189 (50.79%), Query Frame = 3 Query: 54 HQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDART-IRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVI 617 HQKRLS P+ W +++ + T+ KA GPH +PL++ +R+ L YA N +E + + + V ++GK +D P G D+++ + E++R+ GR + I + A+ KL K+ GG L HD T I D D++ V G+++ +++ G ++ A G + G VG + Sbjct: 4 HQKRLSVPNSWPVERKTATFTVKAGAGPHG-ESGVPLLIVLRDVLGYADNRKEARYALNEDNVLINGKAISDEERPVGMFDILAFTEREEYYRVFPGEGGRLALTAIDPDAAQSKLGKIVTKTHVSGGDVQLGLHDGETLIVEDDQTYDAGDSIVVGNEDGEVVAHFEYEEGALVTAVDGAHAGEVGEV 191 The following BLAST results are available for this feature:
BLAST of FC930961 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 103
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Sequences
The
following sequences are available for this feature:
EST sequence >FC930961 ID=FC930961; Name=FC930961; organism=Citrus clementina; type=EST; length=713bpback to top |