FC930961

Overview
NameFC930961
Unique NameFC930961
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length713
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15316 contig Ccv1_Contig15316:33..746. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4E_THEAC (30S ribosomal protein S4e OS=Thermoplasma acidophilum GN=rps4e PE=1 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 9.190e-21
Identity = 69/219 (31.51%), Postives = 103/219 (47.03%), Query Frame = 3
Query:   60 KRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDG-GFNIVHVRDALDNSSLP*VHVFVM 713
            KRL       + + +  + P  +PG H     + L+  IR+ LK +   RE   I+   LVKVDGK   +  +  GFMDVI  E  GE +R+VY+ +G   + +   E A  KL KV+   +  G    L THD RT    D + KV D   V +   KI + +K   G     T G ++ + G I+  E  +G   N+VH ++          HVF++
Sbjct:    6 KRLMVSRQVKIPRKTYFWGPTPNPGMHPKDQSVTLLSIIRDYLKLSDKEREAARILANGLVKVDGKTVREKKFAVGFMDVI--EINGESYRVVYNDQGALVLMKETKERASMKLLKVRSKVIAPGNRIQLGTHDGRTFITDDKSKKVGDVWAVSVPDMKISEIIKMQPGNKAYITAGSHVNQTGTISKIEAKEGSSANLVHFQEGFSTIK---DHVFMI 219          
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4E_PICTO (30S ribosomal protein S4e OS=Picrophilus torridus GN=rps4e PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.190e-21
Identity = 70/219 (31.96%), Postives = 107/219 (48.86%), Query Frame = 3
Query:   60 KRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRE-RHDGGFNIVHVRDALDNSSLP*VHVFVM 713
            K + AP    + + S  +A  + PG HK    +PL++ +R+ LK     RE+  I+   LV VDGKV  +     GFMD +++  +G  + + YD KG+  +     E    KL +VK     KGG   +  HD  T+      IK  D+V V I   +I+D +KF  G  +  TGG ++G +  I   E +   G N+VH+ +     S    +VFVM
Sbjct:    6 KIMMAPRKLKIARKSRFWAVNSLPGSHKKDSSIPLLIALRDYLKLGDKEREITRILTNSLVMVDGKVVKERRRGIGFMDTLTV--SGNDYLVSYDRKGKLVILPKPGETKGLKLLRVKGKTYVKGGRIQISFHDGSTMVTDRKDIKNGDSVLVKIPKKEIVDVLKFAPGNRVFITGGSHVGEIATIKSIEIKSSSGENMVHMNEGFSTVS---SYVFVM 219          
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4E_THEVO (30S ribosomal protein S4e OS=Thermoplasma volcanium GN=rps4e PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.568e-20
Identity = 69/219 (31.51%), Postives = 102/219 (46.58%), Query Frame = 3
Query:   60 KRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRE-RHDGGFNIVHVRDALDNSSLP*VHVFVM 713
            KRL  P    + + +  + P   PG HK    + L+  IR+ L+ +   RE   I+   LVKVDGKV  +  +  GFMDVI  E +GE +R+VY+ +G   +     + A  K  +VK   +  G    L  HD R +   D +I V D V   +   KI + +K   G     TGG ++G  G I+  E +     N+VH  +          HVFV+
Sbjct:    6 KRLMVPRTVKIPRKTYFWGPTPLPGRHKADHSVTLLTIIRDYLRLSDKEREATRILANGLVKVDGKVVKERKFGVGFMDVI--EISGESYRVVYNNQGALVLVSESKDRANMKPLQVKNKVIAPGNKIQLGFHDGRVMVTEDRSISVGDVVIASLPDMKITEIIKMQPGNKAFITGGSHVGETGTISKIEIKESSSANLVHFDEGFTTVK---DHVFVI 219          
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4E_HALLT (30S ribosomal protein S4e OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rps4e PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.674e-20
Identity = 60/211 (28.44%), Postives = 104/211 (49.29%), Query Frame = 3
Query:   51 KHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRY-PDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDG-GFNIVHVRDALD 677
            +HQKRL+ P+ W +++ + T+  KA  GPH     +PL+V +R+ L Y  + +E +  +    V V+G   +D   P G  D+++  + GE FR+  D  GR  +  +  E A  +L K+    +  GG   L  HD   +    D      D++ VD  +  ++   +++ G ++ A  G++ GR+G +   +   G G N V V D  D
Sbjct:    3 RHQKRLAVPNSWPVERKTNTFTVKAGAGPHGEAG-VPLVVLLRDVLGYVDSTKEARYALNNDSVLVNGDAISDEQRPIGMFDILAFPERGEFFRVFPDEGGRLALTSVDEEAAGSRLGKITNKSVVPGGDAQLTLHDGTNVLVDADTEYDTKDSIVVDNESKDVVAHFEYEEGALVTAVAGQHAGRIGEVADIDVTLGSGSNTVFVGDDED 212          
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4E_METS5 (30S ribosomal protein S4e OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rps4e PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.492e-20
Identity = 62/191 (32.46%), Postives = 93/191 (48.69%), Query Frame = 3
Query:   54 HQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPA-----IKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVG 611
            H  RL AP      K    +  +ASPGPH L   +PL + +R+ L +  + +E K I+    V VDG+VR D  YP G MDVI++     + R+V D        +I  EE+++KL ++    L KGG+      D R +     +     +    T+K+ I   +IL    F   V +MA GG+N G +G
Sbjct:    3 HITRLEAPWFLRASKKEYKWTVRASPGPHPLGKSIPLGLLLRDYLAFTSSLKESKKIISDGKVLVDGRVRRDYKYPVGLMDVIAIPHADLYLRIVPDRARLLKPVKISEEESKFKLVRLLNKTLVKGGLLQFNLEDGRNLLISKESTEMFKLPTLTTLKISIPNQEILGVYGFKENVYVMAVGGKNAGIIG 193          
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4_BIGNA (40S ribosomal protein S4 OS=Bigelowiella natans GN=RPS4 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.561e-20
Identity = 57/217 (26.27%), Postives = 105/217 (48.39%), Query Frame = 3
Query:   39 RGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDGGFNIVHVRDALDNSSL 689
            +G  KHQKR+S+ +     K  G +  K S GPH     + L+  I+     A N +E + ++    + V+GK      +P   MD IS     +H+R++    G+ TV+ I   E + K+CKV ++         ++T D R ++     IKV D++ +     +I+  +KF+ G + + T G+++G + VI    +      ++H+ + +D   L
Sbjct:    3 KGIKKHQKRISSNTMIKYKKKLGIFNTKISSGPHSKVKSVSLLNIIKKFFHLADNNQEAQKVVKTGFLYVNGKKCLSHKFPISLMDTISFPLANKHYRVLLSKAGKLTVYEINQNEKDLKICKVIKIINASSKNKIIITDDLRELKINYAKIKVEDSLLIKTINDEIVYALKFEVGSLCLITRGKHLGTIAVIKEIRKTKSLRKMIHL-EKIDGKKL 218          
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4E_HALSA (30S ribosomal protein S4e OS=Halobacterium salinarium GN=rps4e PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.327e-19
Identity = 63/206 (30.58%), Postives = 98/206 (47.57%), Query Frame = 3
Query:   54 HQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDG-GFNIVHVRD 668
            HQKRLS P  W +++ + T+  KA  GPH     +PL+V +R+ L+Y  +  E +  +    V V+G    D   P G  D+++     E++R+  D  GR  +  I A+ A  KL KV       GG   L  HD   +   + A    D+V VD  T +I+   +++ G ++ A  G++ G +G I       G   N V V D
Sbjct:    4 HQKRLSVPKSWPVERKTETFTAKAGAGPHG-ESGVPLVVVLRDVLEYVDDTSEAQYAINTDGVLVNGDSVGDVNRPIGMFDILAFPDRDEYYRVFPDEGGRLGLTEIDADAAGSKLNKVTDKTTVSGGRTQLNFHDGSNLALDEDAYAGGDSVVVDTDTNEIVAHFQYEEGALVTAVAGQHAGDIGEIAEINVQPGSASNTVRVDD 208          
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4E_HALS3 (30S ribosomal protein S4e OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rps4e PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.327e-19
Identity = 63/206 (30.58%), Postives = 98/206 (47.57%), Query Frame = 3
Query:   54 HQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDG-GFNIVHVRD 668
            HQKRLS P  W +++ + T+  KA  GPH     +PL+V +R+ L+Y  +  E +  +    V V+G    D   P G  D+++     E++R+  D  GR  +  I A+ A  KL KV       GG   L  HD   +   + A    D+V VD  T +I+   +++ G ++ A  G++ G +G I       G   N V V D
Sbjct:    4 HQKRLSVPKSWPVERKTETFTAKAGAGPHG-ESGVPLVVVLRDVLEYVDDTSEAQYAINTDGVLVNGDSVGDVNRPIGMFDILAFPDRDEYYRVFPDEGGRLGLTEIDADAAGSKLNKVTDKTTVSGGRTQLNFHDGSNLALDEDAYAGGDSVVVDTDTNEIVAHFQYEEGALVTAVAGQHAGDIGEIAEINVQPGSASNTVRVDD 208          
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4E_NATPD (30S ribosomal protein S4e OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps4e PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.264e-19
Identity = 54/189 (28.57%), Postives = 96/189 (50.79%), Query Frame = 3
Query:   54 HQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPD-PAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVI 617
            HQKRL+ P  W +++    Y  KA+ GPH   + +PL++ +R+ L Y  + +E +  + Q  + ++G   +D   P G  D+++ ++  E++R+  D  GR ++  I  + A  KL K+       GG   L  HD  T+   D  A   ND++ V     +I+    ++ G ++ A  G + GR+G I
Sbjct:    4 HQKRLAVPKSWPVERKEEAYTTKAAAGPHG-EEGVPLLIVLRDVLGYVDSKKEARYALEQDSILINGTAVSDERRPVGMFDILAFDEREEYYRIFPDEGGRLSLTPIDEDAAGSKLGKIVGKTQVAGGDTQLSLHDGETLLVEDATAYDTNDSIVVSNDGEEIVAHFTYEEGALVTAVSGAHAGRIGTI 191          
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4E_HALMA (30S ribosomal protein S4E OS=Haloarcula marismortui GN=rps4e PE=1 SV=3)

HSP 1 Score: 95.9005 bits (237), Expect = 2.264e-19
Identity = 55/189 (29.10%), Postives = 96/189 (50.79%), Query Frame = 3
Query:   54 HQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDART-IRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVI 617
            HQKRLS P+ W +++ + T+  KA  GPH     +PL++ +R+ L YA N +E +  + +  V ++GK  +D   P G  D+++  +  E++R+     GR  +  I  + A+ KL K+       GG   L  HD  T I   D      D++ V    G+++   +++ G ++ A  G + G VG +
Sbjct:    4 HQKRLSVPNSWPVERKTATFTVKAGAGPHG-ESGVPLLIVLRDVLGYADNRKEARYALNEDNVLINGKAISDEERPVGMFDILAFTEREEYYRVFPGEGGRLALTAIDPDAAQSKLGKIVTKTHVSGGDVQLGLHDGETLIVEDDQTYDAGDSIVVGNEDGEVVAHFEYEEGALVTAVDGAHAGEVGEV 191          
The following BLAST results are available for this feature:
BLAST of FC930961 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
RS4E_THEAC9.190e-2131.5130S ribosomal protein S4e OS=Thermoplasma acidophi... [more]
RS4E_PICTO9.190e-2131.9630S ribosomal protein S4e OS=Picrophilus torridus ... [more]
RS4E_THEVO1.568e-2031.5130S ribosomal protein S4e OS=Thermoplasma volcaniu... [more]
RS4E_HALLT2.674e-2028.4430S ribosomal protein S4e OS=Halorubrum lacusprofu... [more]
RS4E_METS53.492e-2032.4630S ribosomal protein S4e OS=Metallosphaera sedula... [more]
RS4_BIGNA4.561e-2026.2740S ribosomal protein S4 OS=Bigelowiella natans GN... [more]
RS4E_HALSA1.327e-1930.5830S ribosomal protein S4e OS=Halobacterium salinar... [more]
RS4E_HALS31.327e-1930.5830S ribosomal protein S4e OS=Halobacterium salinar... [more]
RS4E_NATPD2.264e-1928.5730S ribosomal protein S4e OS=Natronomonas pharaoni... [more]
RS4E_HALMA2.264e-1929.1030S ribosomal protein S4E OS=Haloarcula marismortu... [more]

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Properties
Property NameValue
Genbank descriptionC34110H07EF PostHarvP1 Citrus clementina cDNA clone C34110H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930961 ID=FC930961; Name=FC930961; organism=Citrus clementina; type=EST; length=713bp
GGACCACCTAACCTTCAGTCGACAAATCAGTCAAAATGCGCGGCCCCGGA
AAGCACCAGAAGCGCCTCAGCGCGCCCTCGCACTGGCTCTTGGACAAAAT
GTCCGGAACCTACGCGCCCAAGGCCTCCCCCGGTCCCCACAAGCTCCGGG
ACTGCCTTCCCCTGATTGTCTTCATCCGTAACCGTCTCAAGTACGCCCTG
AACGGTCGCGAGGTCAAGGCCATCATGATGCAGCGTCTGGTCAAGGTTGA
CGGCAAGGTCCGCACCGACACCACCTACCCCGCTGGATTCATGGACGTCA
TCTCCCTCGAGAAGACCGGCGAGCACTTCCGTCTCGTTTACGACACCAAG
GGTCGCTTCACCGTCCACCGTATTCAGGCTGAGGAGGCTGAGTACAAGCT
CTGCAAGGTCAAGCGTGTTCAGCTCGGCAAGGGCGGGATCCCATTCTTGG
TTACGCACGATGCGCGAACCATCCGCTACCCCGACCCTGCCATCAAGGTC
AACGACACCGTCAAGGTTGACATTGCCACTGGCAAGATCCTCGACTTCGT
CAAGTTCGACTCCGGTGTTGTCATCATGGCCACTGGTGGTCGCAACATGG
GTCGTGTTGGTGTCATCACTCACCGTGAGCGTCACGACGGTGGTTTCAAC
ATCGTCCACGTTCGCGATGCTCTGGACAACAGTTCGCTCCCGTGAGTCCA
CGTCTTCGTCATG
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