FC930963

Overview
NameFC930963
Unique NameFC930963
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length677
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930963 vs. ExPASy Swiss-Prot
Match: BIOF_SALSV (8-amino-7-oxononanoate synthase OS=Salmonella schwarzengrund (strain CVM19633) GN=bioF PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.622e-11
Identity = 52/215 (24.19%), Postives = 97/215 (45.12%), Query Frame = 1
Query:    1 SMEGELCKFPEXXXXXXXXXXXXXLDEAHSIGAVGKTGRGVCELLEVDTADVDIMMGTFTKSFGSCGGYIAGSKELIQYLKYTCPAHLYATSISPPAAEQIISAIKVILGEDGSSRGAQKLARIRENSNFFRSELQKMGFEVLGDNDSPVMPIMLYNPAKIPAFSRECLRQNXXXXXXXXXXXXLLLARARICISASHTKEDLIKALEVISRVGD 645
            SM+G+     E             +D+AH IG  G  GRG C    V     ++++ TF K FG  G  +  S+ +  YL       +Y+TS+ P  A+ + +++ VI  ++G  R  +KLA + +    FR+ +    F +L  + S + P+++ + +     +    +Q             +  AR R+ ++ +H   D+ + LEV+   G+
Sbjct:  179 SMDGDSAPLAEIQHIARRHHAWLLVDDAHGIGVTGDEGRGTCWQRGVKP---ELLVVTFGKGFGVSGAAVLCSESVADYLLQFARHLVYSTSMPPAQAQALSASLAVIRSDEGGER-REKLAALVQR---FRAGVNASRFTLLNAH-SAIQPLIVGDNSHALRLAEALRQQGCWATAIRPPTVPVGTARLRLTLTQAHEACDIDRLLEVLHGAGE 385          
BLAST of FC930963 vs. ExPASy Swiss-Prot
Match: BIOF_HERAR (8-amino-7-oxononanoate synthase OS=Herminiimonas arsenicoxydans GN=bioF PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.622e-11
Identity = 54/221 (24.43%), Postives = 101/221 (45.70%), Query Frame = 1
Query:    1 SMEGELCKFPEXXXXXXXXXXXXXLDEAHSIGAVGKTGRGVCELLEVDTADVD--IMMGTFTKSFGSCGGYIAGSKELIQYLKYTCPAHLYATSISPPAAEQIISAIKVILGEDGSSRGAQ---KLARIRENSNFFRSEL----QKMGFEVLGDNDSP--VMPIMLYNPAKIPAFSRECLRQNXXXXXXXXXXXXLLLARARICISASHTKEDLIKALEVI 630
            SM+G+L    +             +D+AH  G +G  GRG      +  A+    + MGT  K+ G  G +IAG++E+I++L      +++ T+ SP  A  ++ ++ +I G DG +R +Q    +AR+++     R +L      +   ++G+ND+   V   +      +PA     + +                AR RI +SA+H+  D+ + L  +
Sbjct:  178 SMDGDLAPLTQLLELAERYDAWLMVDDAHGFGILGPQGRGTLVQYGIVLAEHPRLLYMGTLGKAAGVSGAFIAGAEEVIEWLLQRARTYIFTTASSPMLAATLLKSLDLIAGADGDARRSQLQLLIARLQDGLQGSRWQLLPSPTAIQAIIIGENDAALRVAAALAEQGLWVPAIRPPTVPKG--------------TARLRITLSAAHSLADVDRLLAAL 384          
BLAST of FC930963 vs. ExPASy Swiss-Prot
Match: BIKB_AQUAE (Putative 8-amino-7-oxononanoate synthase/2-amino-3-ketobutyrate coenzyme A ligase OS=Aquifex aeolicus GN=aq_626 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.622e-11
Identity = 47/203 (23.15%), Postives = 90/203 (44.33%), Query Frame = 1
Query:    1 SMEGELCKFPEXXXXXXXXXXXXXLDEAHSIGAVGKTGRGVCELLEVDTADVDIMMGTFTKSFGSCGGYIAGSKELIQYLKYTCPAHLYATSISPPAAEQIISAIKVILGEDGSSRGAQKLARIRENSNFFRSELQKMGFEVLGDNDSPVMPIMLYNPAKIPAFSRECLRQNXXXXXXXXXXXXLLLARARICISASHTKEDL 609
            SM+G++                  +DEAH+ G +GK G    +   ++  +  I+MGT +K+ GS G ++ G+K LI YL     + +++TS+ P        AI++I          + +  +R+        L++   +      +P++PIM+Y+  +      E L++                AR R+  S ++T++DL
Sbjct:  166 SMDGDVADLKRLTQICEEYDCMLYIDEAHTTGTIGKGG---LDYFGIEHKEYIIVMGTLSKALGSYGAFVCGTKLLIDYLVNKARSLIFSTSLPPSVCAGAKKAIEII------EENPKLIEFLRKKEKEILEILEQFSLD-YKYYSTPIIPIMVYDEKETVRIKEELLKEGVFIQAIRYPTVPKGKARLRLTASLNYTRKDL 358          
BLAST of FC930963 vs. ExPASy Swiss-Prot
Match: HEM1_PARDP (5-aminolevulinate synthase OS=Paracoccus denitrificans (strain Pd 1222) GN=hemA PE=3 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.036e-11
Identity = 43/142 (30.28%), Postives = 71/142 (50.00%), Query Frame = 1
Query:   73 LDEAHSIGAVGKTGRGVCELLEVDTADVDIMMGTFTKSFGSCGGYIAGSKELIQYLKYTCPAHLYATSISPPAAEQIISAIKVILGEDGS-SRGAQKLARIRENSNFFRSELQKMGFEVLGDNDSPVMPIMLYNPAKIPAFS 495
            LDE H++G  G  G GV E   +    +DI  GT  K+FG  GGYIA S  ++  ++   P  ++ TS+ P  A    ++I  +   +G   R  Q+L     N+   +  L+ +G  ++ D+ S ++P+ + NP    A S
Sbjct:  213 LDEVHAVGMYGPRGGGVAERDGLSHR-IDIFNGTLGKAFGVFGGYIAASARMVDAIRSYAPGFIFTTSLPPAVAAGAAASIAFLKTAEGQLLRDQQQL-----NARILKMRLRGLGMPIM-DHGSHIVPVHVGNPVHCKALS 347          
BLAST of FC930963 vs. ExPASy Swiss-Prot
Match: HEM0_CHICK (5-aminolevulinate synthase, erythroid-specific, mitochondrial OS=Gallus gallus GN=ALAS2 PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.036e-11
Identity = 42/150 (28.00%), Postives = 71/150 (47.33%), Query Frame = 1
Query:    1 SMEGELCKFPEXXXXXXXXXXXXXLDEAHSIGAVGKTGRGVCELLEVDTADVDIMMGTFTKSFGSCGGYIAGSKELIQYLKYTCPAHLYATSISPPAAEQIISAIKVILGEDGSSRGAQKLARIRENSNFFRSELQKMGFEVLGDNDSPV 450
            SM+G +    E             +DE H++G  G  G G+ E   V    VD++ GT  K+ G+ GGYIAGS+ L+  ++   P  ++ T++ P      ++A++V+    GS+ GA      + ++   R  L+  G   L  +  PV
Sbjct:  264 SMDGSIAPLEELCDVAHAYGALTFVDEVHAVGLYGARGAGIAERDGVQHK-VDVVSGTLGKALGAVGGYIAGSEALVDAVRSLGPGFIFTTALPPQRGGGALAALQVV----GSAEGAALRRAHQRHAKHLRVLLRDRGLPALPSHIVPV 408          
BLAST of FC930963 vs. ExPASy Swiss-Prot
Match: BIOF_BURM1 (8-amino-7-oxononanoate synthase OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=bioF PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.036e-11
Identity = 47/215 (21.86%), Postives = 97/215 (45.12%), Query Frame = 1
Query:    1 SMEGELCKFPEXXXXXXXXXXXXXLDEAHSIGAVGKTGRGVCELLEVDTADVDIMMGTFTKSFGSCGGYIAGSKELIQYLKYTCPAHLYATSISPPAAEQIISAIKVILGEDGSSRGAQKLARIRENSNFFRSELQKMGFEVLGDNDSPVMPIMLYNPAKIPAFSRECLRQNXXXXXXXXXXXXLLLARARICISASHTKEDLIKALEVISRVGD 645
            SM+G++    E             +D+AH  G +G  GRG      + +  + + +GT  K+ G  G ++   + +I++L     ++++ T+  P  A  + +++KVI G++G +R A   A I       R+ L++  ++ + D+ + V P+++ +     A  R                     +R RI +SA+H+ +DL +    + R  +
Sbjct:  183 SMDGDIAPLAELLALAERHGAWLVVDDAHGFGVLGPQGRGALAAAALRSPHL-VYVGTLGKAAGVAGAFVVAHETVIEWLIQRARSYIFTTAAPPAVAHAVSASLKVIAGDEGDARRAHLAALIERT----RALLRRTRWQPV-DSHTAVQPLVIGSNEATLAAMRALDAHGLWVPAIRPPTVPAGTSRLRISLSAAHSFDDLARLETALLRASE 391          
BLAST of FC930963 vs. ExPASy Swiss-Prot
Match: HEM0_DANRE (5-aminolevulinate synthase, erythroid-specific, mitochondrial OS=Danio rerio GN=alas2 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.883e-11
Identity = 47/161 (29.19%), Postives = 75/161 (46.58%), Query Frame = 1
Query:    1 SMEGELCKFPEXXXXXXXXXXXXXLDEAHSIGAVGKTGRGVCELLEVDTADVDIMMGTFTKSFGSCGGYIAGSKELIQYLKYTCPAHLYATSISPPAAEQIISAIKVILGEDGSSRGAQKLARIRE-NSNFFRSELQKMGFEVLGDNDSPVMPIMLYNPAK 480
            SM+G +C   E             +DE H++G  G  G GV E   V    +DI+ GT  K+FG  GGYIA +  L+  ++      ++ TS+ P      + +++V+  ++G     Q L R  + N    R  L   G  V+ +  S ++PI + N AK
Sbjct:  327 SMDGAICPLEELCDVAHKYGALTFVDEVHAVGLYGAHGAGVGERDNV-MHKIDIVSGTLGKAFGCVGGYIASTAALVDTVRSFAAGFIFTTSLPPMVLAGALESVRVLKSDEG-----QALRRAHQRNVKHMRQLLLDAGLPVV-NCPSHIIPIRVGNAAK 480          
The following BLAST results are available for this feature:
BLAST of FC930963 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 227
Match NameE-valueIdentityDescription
BIOF_SALSV4.622e-1124.198-amino-7-oxononanoate synthase OS=Salmonella schw... [more]
BIOF_HERAR4.622e-1124.438-amino-7-oxononanoate synthase OS=Herminiimonas a... [more]
BIKB_AQUAE4.622e-1123.15Putative 8-amino-7-oxononanoate synthase/2-amino-3... [more]
HEM1_PARDP6.036e-1130.285-aminolevulinate synthase OS=Paracoccus denitrifi... [more]
HEM0_CHICK6.036e-1128.005-aminolevulinate synthase, erythroid-specific, mi... [more]
BIOF_BURM16.036e-1121.868-amino-7-oxononanoate synthase OS=Burkholderia mu... [more]
HEM0_DANRE7.883e-1129.195-aminolevulinate synthase, erythroid-specific, mi... [more]

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Properties
Property NameValue
Genbank descriptionC34110H09EF PostHarvP1 Citrus clementina cDNA clone C34110H09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930963 ID=FC930963; Name=FC930963; organism=Citrus clementina; type=EST; length=677bp
AGCATGGAAGGGGAGCTTTGCAAATTTCCTGAGATTATTGCTATCTGCAA
AAAATATAAGGCATATATATACTTGGATGAGGCCCACAGTATCGGAGCAG
TGGGCAAAACCGGAAGAGGGGTTTGTGAGCTCTTAGAAGTTGATACTGCT
GATGTGGATATCATGATGGGAACTTTTACTAAATCATTTGGATCCTGTGG
TGGCTACATTGCAGGATCTAAGGAACTCATCCAATATTTGAAGTACACTT
GTCCTGCTCATCTTTACGCAACTTCAATTTCACCACCTGCTGCAGAACAA
ATAATATCTGCCATAAAGGTTATTCTCGGGGAGGATGGTTCCAGCAGAGG
TGCCCAGAAACTTGCACGCATTCGTGAGAATAGCAACTTTTTTAGGTCCG
AACTGCAAAAAATGGGGTTTGAGGTTCTTGGAGATAATGATTCTCCAGTG
ATGCCAATTATGCTTTACAATCCTGCCAAAATCCCTGCTTTCTCACGAGA
GTGCCTCAGGCAGAATGTGGCTGTTGTGACTGTTGCATTTCCTGCAACCC
CACTGCTATTGGCAAGGGCTCGAATCTGCATATCAGCATCGCATACCAAG
GAGGACCTGATTAAAGCCTTGGAGGTTATCAGTAGGGTTGGTGATCTTGT
GGGTATTAATACTTCCCAGCTGAACCT
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