FC930965

Overview
NameFC930965
Unique NameFC930965
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12766 contig Ccv1_Contig12766:1020..1713. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_TRIEI (Glutamyl-tRNA reductase OS=Trichodesmium erythraeum (strain IMS101) GN=hemA PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.541e-35
Identity = 83/210 (39.52%), Postives = 126/210 (60.00%), Query Frame = 1
Query:    1 GQGVVGFGRNISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLR--LFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEE 624
            GQ   G GR ++ LFK A++ GKRVRTET+I            ELA MKL + S+   ++ ++GAGKM KL+++HL+AKG  K+ ++NRS  R   +        I    + EM+    ++D+VFTSTA+       + + D   +E  +  L+  + +DISVPRN+G+ V+++   R +NVDDLK VVA N+E R + AMEA+ ++ EE
Sbjct:  128 GQKYKGIGRILNRLFKQAVTAGKRVRTETSIGTGAVSVSSAAVELAQMKLEDLSNY--QVAIVGAGKMSKLLVQHLLAKGANKISIINRSVGRAQDLANSFKDANIKVYSMLEMVQVIGESDLVFTSTAAT------ELILDKAKLETILDPLKPLMLVDISVPRNIGNDVSELPNVRCFNVDDLKAVVAQNRESRRQMAMEAEVLLEEE 329          

HSP 2 Score: 25.0238 bits (53), Expect = 1.541e-35
Identity = 10/19 (52.63%), Postives = 13/19 (68.42%), Query Frame = 3
Query:  624 IKQFAAWRDSLETVPTIKN 680
            ++ F  W  SLETVPTI +
Sbjct:  330 VEAFDVWWKSLETVPTINS 348          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_CYAP7 (Glutamyl-tRNA reductase OS=Cyanothece sp. (strain PCC 7424) GN=hemA PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.835e-35
Identity = 83/209 (39.71%), Postives = 126/209 (60.29%), Query Frame = 1
Query:   16 GFGRNISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEESNSLQL 642
            G GR +  LFK A++ GKRVR+ET+I            ELA MK+ +      R+ +IGAGKM +L+++HL++KG +K+ +VNRS  R   +       ++   PL EM++  + +D+VFTST +  P+  + +++ +     AV    + +DISVPRNV + V  +E  + YNVDDLK VVAAN+E R R A EA+ ++ EE  S +L
Sbjct:  133 GIGRLLDRLFKQAMTAGKRVRSETSIGTGAVSISSAAVELAQMKVIDI--CVCRVTIIGAGKMSRLLVQHLLSKGVSKIAIVNRSLRRAQELAGLFPEAQLQLHPLEEMINAVSVSDIVFTSTGATEPILNRSNLESI----IAVNQSLMLVDISVPRNVDADVQQLEQIQSYNVDDLKAVVAANQESRRRLAQEAEGLLEEEVESFEL 335          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_CYAP4 (Glutamyl-tRNA reductase OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=hemA PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.400e-34
Identity = 84/220 (38.18%), Postives = 129/220 (58.64%), Query Frame = 1
Query:    1 GQGVVGFGRNISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEESNSLQLGGIHWR 660
            GQ   G G  ++ LFK AI+ GKRVRTET+I            ELA +K P    A  R+ V+GAGKM +LV++HL+AKG  ++ ++NRS ER   +  + +   +    L+E+ +     D++FT T++  PL  +  ++ +  V  ++    + IDI+VPRNV + V ++E  +V+NVDDLK VVA N+E R   AMEA+A++ EE  +     + WR
Sbjct:  128 GQQYNGIGTILNRLFKQAITAGKRVRTETSIGTGAVSISSAAVELAQLKTP--CLADCRVAVLGAGKMSRLVVQHLLAKGANQIAILNRSTERARELANQFSEASLQIHSLAELFNVITRYDLIFTGTSATEPLLDRSKLEPVLEVNQSL----MIIDIAVPRNVHANVNELEQVQVFNVDDLKAVVAQNQESRRAMAMEAEALLEEELTAFD---VWWR 338          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_SYNP2 (Glutamyl-tRNA reductase OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=hemA PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.676e-34
Identity = 83/208 (39.90%), Postives = 124/208 (59.62%), Query Frame = 1
Query:    1 GQGVVGFGRNISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEE 624
            GQ   G GR +  +FK AI+ GKRVR+ETNI            ELA MK+ + S+   ++ +IGAGKM +L+++HLV+KG   + +VNRSE     + ++   V++  + L EML+    AD+VFTST +  P+  +  +++L           + IDISVP NV + V ++   R+YNVD LKEVVA N+  R + A EA+A++ EE
Sbjct:  128 GQQHKGLGRLLDRMFKRAITAGKRVRSETNIGTGAVSISSAAVELAQMKVKDLSNQ--KIAIIGAGKMSRLLVQHLVSKGAEDITIVNRSERGARDLAKKFPDVDLQLELLPEMLNVVEQADIVFTSTGATEPILDRAKLENLDL------HTLILIDISVPLNVAADVEEIAGVRLYNVDALKEVVAQNQASRRKMAEEAEALLEEE 327          

HSP 2 Score: 24.6386 bits (52), Expect = 3.676e-34
Identity = 9/19 (47.37%), Postives = 13/19 (68.42%), Query Frame = 3
Query:  624 IKQFAAWRDSLETVPTIKN 680
            ++ +  W  SLETVPTI +
Sbjct:  328 VENYIQWWQSLETVPTISS 346          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_CYAP8 (Glutamyl-tRNA reductase OS=Cyanothece sp. (strain PCC 8801) GN=hemA PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 6.234e-34
Identity = 88/214 (41.12%), Postives = 119/214 (55.61%), Query Frame = 1
Query:    1 GQGVVGFGRNISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEESNSLQL 642
            GQ   G GR +  LFK AI+ GKRVR+ETNI            ELA  K  +   A  R+ +IGAGKM +L+++HL++KG T + +VNRS  R   +  +     +  + L EM+   A + +VFTSTA+  P+    H ++L         L LF DISVPRNV S V  +E    YNVDDLK VVA N E R + A EA+ ++ EE  +  L
Sbjct:  128 GQKYKGIGRLLDRLFKQAITAGKRVRSETNIGTGAVSISSAAVELAQTKAEDL--ANRRISIIGAGKMARLLVQHLLSKGATDITIVNRSHHRAQELAAQFPQASLNLQLLPEMMQVVASSHIVFTSTAATEPIL---HRENLTAALDPNHALMLF-DISVPRNVASDVHGMEGIESYNVDDLKAVVAQNYESRRQMAQEAEGLLEEEVEAFDL 335          

HSP 2 Score: 23.8682 bits (50), Expect = 6.234e-34
Identity = 10/17 (58.82%), Postives = 12/17 (70.59%), Query Frame = 3
Query:  624 IKQFAAWRDSLETVPTI 674
            ++ F  W  SLETVPTI
Sbjct:  330 VEAFDLWWRSLETVPTI 346          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_NOSP7 (Glutamyl-tRNA reductase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=hemA PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 9.119e-34
Identity = 84/220 (38.18%), Postives = 133/220 (60.45%), Query Frame = 1
Query:    1 GQGVVGFGRNISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEESNSLQLGGIHWR 660
            GQ   G    ++ LFK A++ GKRVRTET+I            ELA +K+  ++ A  R++++GAGKM +L+++HL++KG  ++ +VNRS +R   + +      I   PLSEM+S  AD+D+VFTST++  P+  +  ++ +  V+ ++    +  DISVPRNV + V ++E  + +NVDDLK VVA N E R + A EA+ ++ EE  +     I WR
Sbjct:  128 GQQYNGIKTILNRLFKQALTAGKRVRTETSIGTGAVSISSAAVELAQIKV--ANLAACRVVILGAGKMSRLLVQHLISKGAVEISIVNRSRDRAQELAKLFPQQPIKIHPLSEMMSVIADSDLVFTSTSATEPILDRVKLEMVLEVQRSL----MLFDISVPRNVHADVNELENVQAFNVDDLKAVVAQNYESRRKIAQEAEKLLEEEVEAFD---IWWR 338          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_ACAM1 (Glutamyl-tRNA reductase OS=Acaryochloris marina (strain MBIC 11017) GN=hemA PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.191e-33
Identity = 85/215 (39.53%), Postives = 128/215 (59.53%), Query Frame = 1
Query:   16 GFGRNISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEESNSLQLGGIHWR 660
            G G  ++ LFK AIS GKRVRTET+I            ELA +K  + S    R+ +IGAGKM +L++KHL++KG  ++ ++NRS +R   + ++  G ++    L++M +   ++D++FTSTAS  PL  +D    L P+        +F DISVPRNV S V ++     +NVDDLK VVA N+E R + A+EA++++ EE  S     + WR
Sbjct:  133 GAGPILNRLFKQAISAGKRVRTETSIGTGAVSISSAAVELAQIKTEDLS--AHRVAIIGAGKMSRLLVKHLLSKGANQIAILNRSLKRAEQLADQFQGADLKLHTLADMQAVLTESDLIFTSTASTEPLLDRD---ILEPIVCDRQSCMIF-DISVPRNVHSNVNELSQVHAFNVDDLKAVVAQNQESRRQMALEAESLLEEEVASFD---VWWR 338          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_SYNY3 (Glutamyl-tRNA reductase OS=Synechocystis sp. (strain PCC 6803) GN=hemA PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 3.043e-33
Identity = 82/214 (38.32%), Postives = 123/214 (57.48%), Query Frame = 1
Query:    1 GQGVVGFGRNISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEESNSLQL 642
            GQ   G GR +  LFK AI+ G+RVRTET+I            EL   ++  SS  T   ++IGAGKM  L++KHL+AKG T + +VNRS+ R   +  +    ++   PL++M +  A  D+VFTST +  P+   +++        ++    + +DISVPRNV + V  +E  R +NVDDLKEVVA N+  R + A +A+A++ EE  +  L
Sbjct:  128 GQKYKGVGRLLDRLFKQAITAGRRVRTETDIGTGAVSISSAAVELVHRQVDLSSQKT---VIIGAGKMACLLVKHLLAKGATDITIVNRSQRRSQDLANQFPQAQLTLCPLTDMFTAIAAGDIVFTSTGATEPILNCENLTGCVINRKSL----MLVDISVPRNVAADVHAMEQVRAFNVDDLKEVVAQNQASRRQMARQAEALLEEEIAAFDL 334          

HSP 2 Score: 23.8682 bits (50), Expect = 3.043e-33
Identity = 11/19 (57.89%), Postives = 12/19 (63.16%), Query Frame = 3
Query:  624 IKQFAAWRDSLETVPTIKN 680
            I  F  W  SLETVPTI +
Sbjct:  329 IAAFDLWWRSLETVPTISS 347          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_MICAN (Glutamyl-tRNA reductase OS=Microcystis aeruginosa (strain NIES-843) GN=hemA PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.901e-31
Identity = 76/201 (37.81%), Postives = 120/201 (59.70%), Query Frame = 1
Query:   40 LFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEESNSLQL 642
            LFK A++ GKRVRTET+I            ELA  K+ + S  + ++ +IGAGKM +L++ HL+AKG  ++ ++NRS+ R   +  E   + +    L EM++  A +D+VFTST +  P+  K  + ++           + IDISVPRNV + V ++   + +NVDDLK VVAAN+E R + A EA+A++ +E  + +L
Sbjct:  141 LFKQAMTAGKRVRTETSIGTGAVSISSAAVELAHAKVTDLS--SKKIAIIGAGKMSRLLVTHLLAKGSQQIAIINRSQRRAQELAREFPHLPLQLYGLEEMMTTVAASDIVFTSTGATEPILTKTLLTEV----TITANSLMLIDISVPRNVHTDVKELAQVQAFNVDDLKAVVAANQESRRQMAREAEALLEQEVEAFEL 335          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_SYNP6 (Glutamyl-tRNA reductase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=hemA PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.243e-31
Identity = 79/215 (36.74%), Postives = 130/215 (60.47%), Query Frame = 1
Query:    1 GQGVVGFGRNISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKL------PESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNG-VEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEE 624
            GQ   G GR ++ L K A++ GKRVRTET+I            ELA +K+       + + A  R+L++GAGKM +L+++HL+AKG   + ++NR+  R   + ++  G ++I    LS +++   +AD+VFTST++  P+  +  ++ +   E  +    + IDI+VPRNV + V ++ +   YNVDDL+EVVA N+E R + A EA+A++ EE
Sbjct:  128 GQQYEGVGRILNRLLKQAVTAGKRVRTETSIGTGAVSISSAAVELAQLKVIARDDRSDGNLAGQRVLILGAGKMSRLLVQHLIAKGADTIQILNRTLGRAEELAKQYGGDLQIQVGLLSGLMNAIVEADIVFTSTSATDPILDRAKLEMVLAPEQRL----MLIDIAVPRNVAADVVELTSVESYNVDDLREVVAQNQESRRKLAEEAEALLEEE 338          
The following BLAST results are available for this feature:
BLAST of FC930965 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 465
Match NameE-valueIdentityDescription
HEM1_TRIEI1.541e-3539.52Glutamyl-tRNA reductase OS=Trichodesmium erythraeu... [more]
HEM1_CYAP72.835e-3539.71Glutamyl-tRNA reductase OS=Cyanothece sp. (strain ... [more]
HEM1_CYAP42.400e-3438.18Glutamyl-tRNA reductase OS=Cyanothece sp. (strain ... [more]
HEM1_SYNP23.676e-3439.90Glutamyl-tRNA reductase OS=Synechococcus sp. (stra... [more]
HEM1_CYAP86.234e-3441.12Glutamyl-tRNA reductase OS=Cyanothece sp. (strain ... [more]
HEM1_NOSP79.119e-3438.18Glutamyl-tRNA reductase OS=Nostoc punctiforme (str... [more]
HEM1_ACAM11.191e-3339.53Glutamyl-tRNA reductase OS=Acaryochloris marina (s... [more]
HEM1_SYNY33.043e-3338.32Glutamyl-tRNA reductase OS=Synechocystis sp. (stra... [more]
HEM1_MICAN1.901e-3137.81Glutamyl-tRNA reductase OS=Microcystis aeruginosa ... [more]
HEM1_SYNP63.243e-3136.74Glutamyl-tRNA reductase OS=Synechococcus sp. (stra... [more]

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Properties
Property NameValue
Genbank descriptionC34110H11EF PostHarvP1 Citrus clementina cDNA clone C34110H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930965 ID=FC930965; Name=FC930965; organism=Citrus clementina; type=EST; length=694bp
GGTCAAGGAGTTGTTGGATTTGGAAGGAACATTAGCGGACTGTTCAAGCA
TGCAATCAGTGTTGGTAAGCGGGTTAGAACCGAGACAAATATTGCTGCTG
GGGCTGTTTCCGTCAGCTCTGCTGCTGTTGAACTGGCTTTGATGAAGCTT
CCTGAATCTTCACATGCCACTGCCCGGATGTTGGTTATTGGAGCAGGCAA
GATGGGGAAGCTTGTGATAAAACACTTGGTAGCCAAAGGATGCACTAAGA
TGGTGGTTGTAAACAGGTCAGAAGAGAGAGTTGCAGCCATCCGCGAGGAG
CTCAACGGTGTTGAGATAATTTATAAACCTCTCTCAGAAATGTTGTCCTG
TGCTGCTGATGCAGATGTGGTCTTCACCAGCACAGCATCTGAAGCTCCAT
TATTCTTGAAGGATCATGTTCAGGACCTTCCTCCCGTTGAGGCTGCAGTT
GGGGGTTTGAGGCTCTTTATTGATATCTCCGTTCCTCGTAATGTGGGCTC
TTGTGTTGCAGATGTTGAAACTGCACGGGTTTACAATGTTGATGACCTTA
AGGAGGTAGTGGCTGCTAATAAAGAGGACAGGCTCCGAAAAGCAATGGAA
GCTCAGGCTATTATCTCTGAGGAATCAAACAGTTTGCAGCTTGGAGGGAT
TCATTGGAGACTGTTCCTACTATTAAGAATTGAGAGCTTATGCT
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