FC930965

Overview
NameFC930965
Unique NameFC930965
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_BACAH (Glutamyl-tRNA reductase OS=Bacillus thuringiensis (strain Al Hakam) GN=hemA PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.330e-21
Identity = 67/208 (32.21%), Postives = 112/208 (53.85%), Query Frame = 1
Query:    4 QGVVGFGRNISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLF-IDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEE 624
            Q V   G   + LFK  I++ KR  +ET I            EL      E +     +L++GAGKMG+L +++L   G  K+ V+NR+  +   + E+  G     KPLSE+     +AD++ +ST +   +  K+    +  VE    G  LF +DI+VPR++   + ++E + +Y++DDL+ VV AN+ +RL++A + Q +I EE
Sbjct:  129 QQVKATGTIFNELFKQVITLAKRAHSETTIGESAMSVSYAAVELGKKIFGELTDC--HVLILGAGKMGELALQNLYGSGARKVTVMNRTLSKAEIMAEKYMGHA---KPLSELQCALLEADILISSTGASDYVITKEM---MTKVEKMRSGRPLFMVDIAVPRDIDPAIDELEGSFLYDIDDLQGVVEANRAERLKEAEKIQFMIEEE 328          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_BACAC (Glutamyl-tRNA reductase OS=Bacillus anthracis (strain CDC 684 / NRRL 3495) GN=hemA PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.330e-21
Identity = 67/208 (32.21%), Postives = 112/208 (53.85%), Query Frame = 1
Query:    4 QGVVGFGRNISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLF-IDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEE 624
            Q V   G   + LFK  I++ KR  +ET I            EL      E +     +L++GAGKMG+L +++L   G  K+ V+NR+  +   + E+  G     KPLSE+     +AD++ +ST +   +  K+    +  VE    G  LF +DI+VPR++   + ++E + +Y++DDL+ VV AN+ +RL++A + Q +I EE
Sbjct:  129 QQVKATGTIFNELFKQVITLAKRAHSETTIGESAMSVSYAAVELGKKIFGELTDC--HVLILGAGKMGELALQNLYGSGARKVTVMNRTLSKAEIMAEKYMGHA---KPLSELQCALLEADILISSTGASDYVITKEM---MTKVEKMRSGRPLFMVDIAVPRDIDPAIDELEGSFLYDIDDLQGVVEANRAERLKEAEKIQFMIEEE 328          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_BACAA (Glutamyl-tRNA reductase OS=Bacillus anthracis (strain A0248) GN=hemA PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.330e-21
Identity = 67/208 (32.21%), Postives = 112/208 (53.85%), Query Frame = 1
Query:    4 QGVVGFGRNISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLF-IDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEE 624
            Q V   G   + LFK  I++ KR  +ET I            EL      E +     +L++GAGKMG+L +++L   G  K+ V+NR+  +   + E+  G     KPLSE+     +AD++ +ST +   +  K+    +  VE    G  LF +DI+VPR++   + ++E + +Y++DDL+ VV AN+ +RL++A + Q +I EE
Sbjct:  129 QQVKATGTIFNELFKQVITLAKRAHSETTIGESAMSVSYAAVELGKKIFGELTDC--HVLILGAGKMGELALQNLYGSGARKVTVMNRTLSKAEIMAEKYMGHA---KPLSELQCALLEADILISSTGASDYVITKEM---MTKVEKMRSGRPLFMVDIAVPRDIDPAIDELEGSFLYDIDDLQGVVEANRAERLKEAEKIQFMIEEE 328          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_ALHEH (Glutamyl-tRNA reductase OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=hemA PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.330e-21
Identity = 75/217 (34.56%), Postives = 113/217 (52.07%), Query Frame = 1
Query:   22 GRNISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLR----LFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEESNSLQLGGIHWR 660
            GR +  LF+HA SV K+VRT+T I             LA     +  + TA  L+IGAG+  +LV +HL  +G   ++V NR+ ER   +  EL G E I  PLSE+ +   +ADV+  STAS  P+  K        VE AV   R      +D++VPR++     +++   +Y VDDL+EV+A N+  R   A +A+ I+  + +      + WR
Sbjct:  133 GRVLDRLFQHAFSVAKQVRTDTGIGANPVSVAFAAVTLARQIFDDFQNRTA--LLIGAGETIELVARHLREQGLKNLIVANRNLERARQL-VELEGGEAI--PLSEIPTRLPEADVLVASTASPLPILGKG------TVERAVRKRRHRPMFMLDLAVPRDIEPEAGNLDDVYLYTVDDLREVIAENRRSREEAAHQAEEIVQRQVDQF----LSWR 334          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_GEOSL (Glutamyl-tRNA reductase OS=Geobacter sulfurreducens GN=hemA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.470e-21
Identity = 67/191 (35.08%), Postives = 101/191 (52.88%), Query Frame = 1
Query:   52 AISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEE 624
            A SV KRVRTET I            ELA     + S  T  +++IGAG+M +L  KH +  G   ++V NR+ ER   + EE  G  I ++ L + L     AD+V +ST +   +     + ++  +         FIDI+VPR++   V DVE   +Y++DDL+ VVA+N + R  +A +A+ II EE
Sbjct:  145 AFSVAKRVRTETKIASSAVSVSFAAVELARKIFGDLSDKT--VMLIGAGEMCELAAKHFLNNGARGVMVTNRTYERAERLAEEFEGKAIHFEDLFDQLH---KADIVLSSTGATHYIIRPKDIDEV--IRRRKMKPMFFIDIAVPRDIDPKVNDVENVYLYDMDDLQNVVASNLQQRAEEAKKAEGIIEEE 328          

HSP 2 Score: 22.7126 bits (47), Expect = 2.470e-21
Identity = 10/17 (58.82%), Postives = 10/17 (58.82%), Query Frame = 3
Query:  624 IKQFAAWRDSLETVPTI 674
            I QF  W  SLE  PTI
Sbjct:  329 IGQFYKWISSLEVTPTI 345          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_GEOBB (Glutamyl-tRNA reductase OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=hemA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 2.470e-21
Identity = 73/192 (38.02%), Postives = 102/192 (53.12%), Query Frame = 1
Query:   52 AISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPV-EAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEE 624
            A SV KRVRTET I            ELA     E S  T  +L+IGAG+M +L  KH +  G   ++V NR+ ER   + EE +   + ++ L E L     AD++ +ST   AP F+  H +D+  V          FIDI+VPR++   V +VE   +Y VDDL  VVA N E R  +A +A+AI+ +E
Sbjct:  145 AFSVAKRVRTETKIASSAVSVAFAAVELAKKIFGELSDKT--VLLIGAGEMCELAAKHFINTGVRGVMVTNRTYERAEKLAEEFDAKPVHFEALMETLP---KADIILSSTG--APHFII-HEKDMEEVLRRRKHKPMFFIDIAVPRDIDPKVNNVENCYLYTVDDLNGVVATNLEQRKVEAAKAEAIVEQE 328          

HSP 2 Score: 23.0978 bits (48), Expect = 2.470e-21
Identity = 10/17 (58.82%), Postives = 10/17 (58.82%), Query Frame = 3
Query:  624 IKQFAAWRDSLETVPTI 674
            I QF  W  SLE  PTI
Sbjct:  329 IGQFFKWLSSLEVTPTI 345          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_SOLUE (Glutamyl-tRNA reductase OS=Solibacter usitatus (strain Ellin6076) GN=hemA PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.043e-21
Identity = 60/198 (30.30%), Postives = 105/198 (53.03%), Query Frame = 1
Query:   31 ISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEE 624
            + GL   + SV KRVR+ET I            ELA       ++ T  ++++GAGKM +L  +HL   G + + V NR+ ER   + +   G  + Y   + ML    + D++  S+ +   +  KD +Q +  + A        IDI+VPRN+   + D++   +Y++DDL+EVV +N  +R+++A  A+ +++EE
Sbjct:  138 LDGLMSRSFSVAKRVRSETGIGQMAVSVSYAAVELARKIFGSLTNRT--VMIVGAGKMSELAARHLRRSGASHVFVTNRTHERAVDMAKLFQGTPVEYARFTAMLP---EVDILIASSGAPHYILHKDEMQRV--ISARRNKPMFLIDIAVPRNIEPAINDLDNVFLYDIDDLQEVVNSNLRERMKEADHAELLVTEE 328          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_SHEFN (Glutamyl-tRNA reductase OS=Shewanella frigidimarina (strain NCIMB 400) GN=hemA PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.043e-21
Identity = 69/200 (34.50%), Postives = 107/200 (53.50%), Query Frame = 1
Query:   31 ISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEESN 630
            I  LF++  SV K+VRT+T I             +A  K   SS +T ++L+IGAG+  +LV KHL   G   MVV NR+ ER  A+ EE N   I  + + + L     AD+V +STAS  P+  K  V+    ++       L +DI+VPR++ + V +++ A +Y VDDL  ++  N   R   A +A+ I  ++S+
Sbjct:  134 IDRLFQNTFSVAKKVRTDTEIGAAAVSVAFAAVSMA--KHIFSSLSTTKVLLIGAGETIELVAKHLKDNGVASMVVANRTIERAQAMCEEFNATAITLEQIPDFL---PKADIVISSTASPLPILGKGMVE--KALKQRRHQPMLLVDIAVPRDIEAEVGELDDAFLYTVDDLHSIIEQNMASRKEAAEQAELITEDQSH 326          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_SALCH (Glutamyl-tRNA reductase OS=Salmonella choleraesuis GN=hemA PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.043e-21
Identity = 67/197 (34.01%), Postives = 112/197 (56.85%), Query Frame = 1
Query:   40 LFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEESN 630
            +F+ + SV KRVRTET+I             LA       S +T  +L++GAG+  +LV +HL      KM++ NR+ ER  A+ +E+ G E+I   LS++ +   DAD++ +STAS  P+  K  V+    +++      L +DI+VPR+V   V  +  A +Y+VDDL+ +++ N   R   A+EA+ I+ +E++
Sbjct:  141 MFQKSFSVAKRVRTETDIGASAVSVAFAACTLARQIF--ESLSTVTVLLVGAGETIELVARHLREHKVQKMIIANRTRERAQALADEV-GAEVI--SLSDIDARLQDADIIISSTASPLPIIGKGMVERA--LKSRRNQPMLLVDIAVPRDVEPEVGKLANAYLYSVDDLQSIISHNLVQRQAAAVEAETIVEQEAS 330          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_METM6 (Glutamyl-tRNA reductase OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=hemA PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.043e-21
Identity = 65/200 (32.50%), Postives = 105/200 (52.50%), Query Frame = 1
Query:   25 RNISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEE 624
            R + GLF  AI VG+R RTET I            ELA      ++     +L+IGAG+MG LV K L+ K    ++V NR+ ER   + EEL G+ + +  L E ++    +DV+  +T+S   +  K+ + D+        G ++ IDI+ PR+V   V + E  ++Y +DDL+ +   N + R+ +    + II+EE
Sbjct:  112 RYLDGLFLKAIHVGQRARTETKINEGGVSIGSAAVELAEKNFGLTNR---NVLLIGAGEMGTLVAKALLEKHIKAVIVSNRTYERAETLAEELKGIAVHFDKLKEAINF---SDVIICATSSPHYILKKEDLNDV--------GNKIIIDIANPRDVDDAVREFENIKLYTIDDLRNISDKNIQKRVEEVPAVEKIINEE 297          
The following BLAST results are available for this feature:
BLAST of FC930965 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 465
Match NameE-valueIdentityDescription
HEM1_BACAH2.330e-2132.21Glutamyl-tRNA reductase OS=Bacillus thuringiensis ... [more]
HEM1_BACAC2.330e-2132.21Glutamyl-tRNA reductase OS=Bacillus anthracis (str... [more]
HEM1_BACAA2.330e-2132.21Glutamyl-tRNA reductase OS=Bacillus anthracis (str... [more]
HEM1_ALHEH2.330e-2134.56Glutamyl-tRNA reductase OS=Alkalilimnicola ehrlich... [more]
HEM1_GEOSL2.470e-2135.08Glutamyl-tRNA reductase OS=Geobacter sulfurreducen... [more]
HEM1_GEOBB2.470e-2138.02Glutamyl-tRNA reductase OS=Geobacter bemidjiensis ... [more]
HEM1_SOLUE3.043e-2130.30Glutamyl-tRNA reductase OS=Solibacter usitatus (st... [more]
HEM1_SHEFN3.043e-2134.50Glutamyl-tRNA reductase OS=Shewanella frigidimarin... [more]
HEM1_SALCH3.043e-2134.01Glutamyl-tRNA reductase OS=Salmonella choleraesuis... [more]
HEM1_METM63.043e-2132.50Glutamyl-tRNA reductase OS=Methanococcus maripalud... [more]

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Properties
Property NameValue
Genbank descriptionC34110H11EF PostHarvP1 Citrus clementina cDNA clone C34110H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930965 ID=FC930965; Name=FC930965; organism=Citrus clementina; type=EST; length=694bp
GGTCAAGGAGTTGTTGGATTTGGAAGGAACATTAGCGGACTGTTCAAGCA
TGCAATCAGTGTTGGTAAGCGGGTTAGAACCGAGACAAATATTGCTGCTG
GGGCTGTTTCCGTCAGCTCTGCTGCTGTTGAACTGGCTTTGATGAAGCTT
CCTGAATCTTCACATGCCACTGCCCGGATGTTGGTTATTGGAGCAGGCAA
GATGGGGAAGCTTGTGATAAAACACTTGGTAGCCAAAGGATGCACTAAGA
TGGTGGTTGTAAACAGGTCAGAAGAGAGAGTTGCAGCCATCCGCGAGGAG
CTCAACGGTGTTGAGATAATTTATAAACCTCTCTCAGAAATGTTGTCCTG
TGCTGCTGATGCAGATGTGGTCTTCACCAGCACAGCATCTGAAGCTCCAT
TATTCTTGAAGGATCATGTTCAGGACCTTCCTCCCGTTGAGGCTGCAGTT
GGGGGTTTGAGGCTCTTTATTGATATCTCCGTTCCTCGTAATGTGGGCTC
TTGTGTTGCAGATGTTGAAACTGCACGGGTTTACAATGTTGATGACCTTA
AGGAGGTAGTGGCTGCTAATAAAGAGGACAGGCTCCGAAAAGCAATGGAA
GCTCAGGCTATTATCTCTGAGGAATCAAACAGTTTGCAGCTTGGAGGGAT
TCATTGGAGACTGTTCCTACTATTAAGAATTGAGAGCTTATGCT
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