FC930965

Overview
NameFC930965
Unique NameFC930965
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_SHIF8 (Glutamyl-tRNA reductase OS=Shigella flexneri serotype 5b (strain 8401) GN=hemA PE=3 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 1.156e-20
Identity = 66/197 (33.50%), Postives = 111/197 (56.35%), Query Frame = 1 
Query:   40 LFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEESN 630
            +F+ + SV KRVRTET+I             LA       S +T  +L++GAG+  +LV +HL      KM++ NR+ ER   + +E+ G E+I   LSE+     +AD++ +STAS  P+  K  V+    +++      L +DI+VPR+V   V  +  A +Y+VDDL+ +++ N   R   A+EA+ I+++E++
Sbjct:  141 MFQKSFSVAKRVRTETDIGASAVSVAFAACTLARQIF--ESLSTVTVLLVGAGETIELVARHLREHKVQKMIIANRTRERAQILADEV-GAEVI--ALSEIDERLREADIIISSTASPLPIIGKGMVERA--LKSRRNQPMLLVDIAVPRDVEPEVGKLANAYLYSVDDLQSIISHNLAQRKAAAVEAETIVAQETS 330
[Close]
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_SHIBS (Glutamyl-tRNA reductase OS=Shigella boydii serotype 4 (strain Sb227) GN=hemA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.156e-20
Identity = 66/197 (33.50%), Postives = 111/197 (56.35%), Query Frame = 1 
Query:   40 LFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEESN 630
            +F+ + SV KRVRTET+I             LA       S +T  +L++GAG+  +LV +HL      KM++ NR+ ER   + +E+ G E+I   LSE+     +AD++ +STAS  P+  K  V+    +++      L +DI+VPR+V   V  +  A +Y+VDDL+ +++ N   R   A+EA+ I+++E++
Sbjct:  141 MFQKSFSVAKRVRTETDIGASAVSVAFAACTLARQIF--ESLSTVTVLLVGAGETIELVARHLREHKVQKMIIANRTRERAQILADEV-GAEVI--ALSEIDERLREADIIISSTASPLPIIGKGMVERA--LKSRRNQPMLLVDIAVPRDVEPEVGKLANAYLYSVDDLQSIISHNLAQRKAAAVEAETIVAQETS 330
[Close]
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_SHIB3 (Glutamyl-tRNA reductase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=hemA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.156e-20
Identity = 66/197 (33.50%), Postives = 111/197 (56.35%), Query Frame = 1 
Query:   40 LFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEESN 630
            +F+ + SV KRVRTET+I             LA       S +T  +L++GAG+  +LV +HL      KM++ NR+ ER   + +E+ G E+I   LSE+     +AD++ +STAS  P+  K  V+    +++      L +DI+VPR+V   V  +  A +Y+VDDL+ +++ N   R   A+EA+ I+++E++
Sbjct:  141 MFQKSFSVAKRVRTETDIGASAVSVAFAACTLARQIF--ESLSTVTVLLVGAGETIELVARHLREHKVQKMIIANRTRERAQILADEV-GAEVI--ALSEIDERLREADIIISSTASPLPIIGKGMVERA--LKSRRNQPMLLVDIAVPRDVEPEVGKLANAYLYSVDDLQSIISHNLAQRKAAAVEAETIVAQETS 330
[Close]
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_KLEP3 (Glutamyl-tRNA reductase OS=Klebsiella pneumoniae (strain 342) GN=hemA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.156e-20
Identity = 67/197 (34.01%), Postives = 110/197 (55.84%), Query Frame = 1 
Query:   40 LFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEESN 630
            +F+ + SV KRVRTET+I             LA       S  T  +L++GAG+  +LV +HL      KMV+ NR+ ER  A+ +E+ G E+I   LS++     +AD++ +STAS  P+  K  V+    ++A      L +DI+VPR+V   V  +  A +Y+VDDL+ ++  N   R   A++A++I+ +E++
Sbjct:  141 MFQKSFSVAKRVRTETDIGASAVSVAFAACTLARQIFESLSSVT--VLLVGAGETIELVARHLREHHVRKMVIANRTRERAQALADEV-GAEVI--ALSDIDERLKEADIIISSTASPLPIIGKGMVERA--LKARRNQPMLLVDIAVPRDVEPEVGKLANAYLYSVDDLQNIIQHNLAQRKAAAVQAESIVEQETS 330
[Close]
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_ECOSE (Glutamyl-tRNA reductase OS=Escherichia coli (strain SE11) GN=hemA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.156e-20
Identity = 66/197 (33.50%), Postives = 111/197 (56.35%), Query Frame = 1 
Query:   40 LFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEESN 630
            +F+ + SV KRVRTET+I             LA       S +T  +L++GAG+  +LV +HL      KM++ NR+ ER   + +E+ G E+I   LSE+     +AD++ +STAS  P+  K  V+    +++      L +DI+VPR+V   V  +  A +Y+VDDL+ +++ N   R   A+EA+ I+++E++
Sbjct:  141 MFQKSFSVAKRVRTETDIGASAVSVAFAACTLARQIF--ESLSTVTVLLVGAGETIELVARHLREHKVQKMIIANRTRERAQILADEV-GAEVI--ALSEIDERLREADIIISSTASPLPIIGKGMVERA--LKSRRNQPMLLVDIAVPRDVEPEVGKLANAYLYSVDDLQSIISHNLAQRKAAAVEAETIVAQETS 330
[Close]
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_ECOLC (Glutamyl-tRNA reductase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=hemA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.156e-20
Identity = 66/197 (33.50%), Postives = 111/197 (56.35%), Query Frame = 1 
Query:   40 LFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEESN 630
            +F+ + SV KRVRTET+I             LA       S +T  +L++GAG+  +LV +HL      KM++ NR+ ER   + +E+ G E+I   LSE+     +AD++ +STAS  P+  K  V+    +++      L +DI+VPR+V   V  +  A +Y+VDDL+ +++ N   R   A+EA+ I+++E++
Sbjct:  141 MFQKSFSVAKRVRTETDIGASAVSVAFAACTLARQIF--ESLSTVTVLLVGAGETIELVARHLREHKVQKMIIANRTRERAQILADEV-GAEVI--ALSEIDERLREADIIISSTASPLPIIGKGMVERA--LKSRRNQPMLLVDIAVPRDVEPEVGKLANAYLYSVDDLQSIISHNLAQRKAAAVEAETIVAQETS 330
[Close]
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_ECOHS (Glutamyl-tRNA reductase OS=Escherichia coli O9:H4 (strain HS) GN=hemA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.156e-20
Identity = 66/197 (33.50%), Postives = 111/197 (56.35%), Query Frame = 1 
Query:   40 LFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEESN 630
            +F+ + SV KRVRTET+I             LA       S +T  +L++GAG+  +LV +HL      KM++ NR+ ER   + +E+ G E+I   LSE+     +AD++ +STAS  P+  K  V+    +++      L +DI+VPR+V   V  +  A +Y+VDDL+ +++ N   R   A+EA+ I+++E++
Sbjct:  141 MFQKSFSVAKRVRTETDIGASAVSVAFAACTLARQIF--ESLSTVTVLLVGAGETIELVARHLREHKVQKMIIANRTRERAQILADEV-GAEVI--ALSEIDERLREADIIISSTASPLPIIGKGMVERA--LKSRRNQPMLLVDIAVPRDVEPEVGKLANAYLYSVDDLQSIISHNLAQRKAAAVEAETIVAQETS 330
[Close]
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_ECO8A (Glutamyl-tRNA reductase OS=Escherichia coli O8 (strain IAI1) GN=hemA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.156e-20
Identity = 66/197 (33.50%), Postives = 111/197 (56.35%), Query Frame = 1 
Query:   40 LFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEESN 630
            +F+ + SV KRVRTET+I             LA       S +T  +L++GAG+  +LV +HL      KM++ NR+ ER   + +E+ G E+I   LSE+     +AD++ +STAS  P+  K  V+    +++      L +DI+VPR+V   V  +  A +Y+VDDL+ +++ N   R   A+EA+ I+++E++
Sbjct:  141 MFQKSFSVAKRVRTETDIGASAVSVAFAACTLARQIF--ESLSTVTVLLVGAGETIELVARHLREHKVQKMIIANRTRERAQILADEV-GAEVI--ALSEIDERLREADIIISSTASPLPIIGKGMVERA--LKSRRNQPMLLVDIAVPRDVEPEVGKLANAYLYSVDDLQSIISHNLAQRKAAAVEAETIVAQETS 330
[Close]
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_ECO55 (Glutamyl-tRNA reductase OS=Escherichia coli (strain 55989 / EAEC) GN=hemA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.156e-20
Identity = 66/197 (33.50%), Postives = 111/197 (56.35%), Query Frame = 1 
Query:   40 LFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEESN 630
            +F+ + SV KRVRTET+I             LA       S +T  +L++GAG+  +LV +HL      KM++ NR+ ER   + +E+ G E+I   LSE+     +AD++ +STAS  P+  K  V+    +++      L +DI+VPR+V   V  +  A +Y+VDDL+ +++ N   R   A+EA+ I+++E++
Sbjct:  141 MFQKSFSVAKRVRTETDIGASAVSVAFAACTLARQIF--ESLSTVTVLLVGAGETIELVARHLREHKVQKMIIANRTRERAQILADEV-GAEVI--ALSEIDERLREADIIISSTASPLPIIGKGMVERA--LKSRRNQPMLLVDIAVPRDVEPEVGKLANAYLYSVDDLQSIISHNLAQRKAAAVEAETIVAQETS 330
[Close]
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_ECO24 (Glutamyl-tRNA reductase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=hemA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.156e-20
Identity = 66/197 (33.50%), Postives = 111/197 (56.35%), Query Frame = 1 
Query:   40 LFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEESN 630
            +F+ + SV KRVRTET+I             LA       S +T  +L++GAG+  +LV +HL      KM++ NR+ ER   + +E+ G E+I   LSE+     +AD++ +STAS  P+  K  V+    +++      L +DI+VPR+V   V  +  A +Y+VDDL+ +++ N   R   A+EA+ I+++E++
Sbjct:  141 MFQKSFSVAKRVRTETDIGASAVSVAFAACTLARQIF--ESLSTVTVLLVGAGETIELVARHLREHKVQKMIIANRTRERAQILADEV-GAEVI--ALSEIDERLREADIIISSTASPLPIIGKGMVERA--LKSRRNQPMLLVDIAVPRDVEPEVGKLANAYLYSVDDLQSIISHNLAQRKAAAVEAETIVAQETS 330
The following BLAST results are available for this feature:
BLAST of FC930965 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 465
Match NameE-valueIdentityDescription
HEM1_SHIF81.156e-2033.50Glutamyl-tRNA reductase OS=Shigella flexneri serot... [more]
HEM1_SHIBS1.156e-2033.50Glutamyl-tRNA reductase OS=Shigella boydii serotyp... [more]
HEM1_SHIB31.156e-2033.50Glutamyl-tRNA reductase OS=Shigella boydii serotyp... [more]
HEM1_KLEP31.156e-2034.01Glutamyl-tRNA reductase OS=Klebsiella pneumoniae (... [more]
HEM1_ECOSE1.156e-2033.50Glutamyl-tRNA reductase OS=Escherichia coli (strai... [more]
HEM1_ECOLC1.156e-2033.50Glutamyl-tRNA reductase OS=Escherichia coli (strai... [more]
HEM1_ECOHS1.156e-2033.50Glutamyl-tRNA reductase OS=Escherichia coli O9:H4 ... [more]
HEM1_ECO8A1.156e-2033.50Glutamyl-tRNA reductase OS=Escherichia coli O8 (st... [more]
HEM1_ECO551.156e-2033.50Glutamyl-tRNA reductase OS=Escherichia coli (strai... [more]
HEM1_ECO241.156e-2033.50Glutamyl-tRNA reductase OS=Escherichia coli O139:H... [more]

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Properties
Property NameValue
Genbank descriptionC34110H11EF PostHarvP1 Citrus clementina cDNA clone C34110H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930965 ID=FC930965; Name=FC930965; organism=Citrus clementina; type=EST; length=694bp
GGTCAAGGAGTTGTTGGATTTGGAAGGAACATTAGCGGACTGTTCAAGCA
TGCAATCAGTGTTGGTAAGCGGGTTAGAACCGAGACAAATATTGCTGCTG
GGGCTGTTTCCGTCAGCTCTGCTGCTGTTGAACTGGCTTTGATGAAGCTT
CCTGAATCTTCACATGCCACTGCCCGGATGTTGGTTATTGGAGCAGGCAA
GATGGGGAAGCTTGTGATAAAACACTTGGTAGCCAAAGGATGCACTAAGA
TGGTGGTTGTAAACAGGTCAGAAGAGAGAGTTGCAGCCATCCGCGAGGAG
CTCAACGGTGTTGAGATAATTTATAAACCTCTCTCAGAAATGTTGTCCTG
TGCTGCTGATGCAGATGTGGTCTTCACCAGCACAGCATCTGAAGCTCCAT
TATTCTTGAAGGATCATGTTCAGGACCTTCCTCCCGTTGAGGCTGCAGTT
GGGGGTTTGAGGCTCTTTATTGATATCTCCGTTCCTCGTAATGTGGGCTC
TTGTGTTGCAGATGTTGAAACTGCACGGGTTTACAATGTTGATGACCTTA
AGGAGGTAGTGGCTGCTAATAAAGAGGACAGGCTCCGAAAAGCAATGGAA
GCTCAGGCTATTATCTCTGAGGAATCAAACAGTTTGCAGCTTGGAGGGAT
TCATTGGAGACTGTTCCTACTATTAAGAATTGAGAGCTTATGCT
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