FC930965

Overview
NameFC930965
Unique NameFC930965
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_FRATF (Glutamyl-tRNA reductase OS=Francisella tularensis subsp. holarctica (strain FTNF002-00 / FTA) GN=hemA PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.705e-14
Identity = 55/198 (27.78%), Postives = 95/198 (47.98%), Query Frame = 1
Query:   22 GRNISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAII 615
            G+ +  +F+   +  KRVR+ET I             LA  +L   S  +  +L+IGAG+ G+L+ +H+ A    ++++ NR+ E+   I          Y  LSE+      AD++  +      +    +V D P         R+FIDIS+P+ +   + ++E    Y VDD+  V+  NK+ R  ++ +AQ II
Sbjct:  134 GKELDRVFQKVFATAKRVRSETRIGYCPVSVAFSAITLAKRQLDNIS--SKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSVFRNASAHY--LSELPQLIKKADIIIAAVNVLEYIVTCKYVGDKP---------RVFIDISIPQALDPKLGELEQNVYYCVDDINAVIEDNKDKRKYESSKAQKII 318          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_CHLTE (Glutamyl-tRNA reductase OS=Chlorobium tepidum GN=hemA PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 4.705e-14
Identity = 54/196 (27.55%), Postives = 101/196 (51.53%), Query Frame = 1
Query:   52 AISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEII-YKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRL----FIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEE 624
            A SV K+V+T T +            ELA      S+ +  ++L+IGAG+ G+L  KH+ AK    +V+ NR++ +  A+ EEL    ++ Y+   E L    + D++ T+ ++      K+++ +   ++ ++   RL     +D+ +PRNV   V  ++   + ++D LK ++  N E R  +  + +AII EE
Sbjct:  145 AFSVAKKVKTRTKLMEGAVSVSYAAVELAQKIF--SNLSMKKVLLIGAGETGELAAKHMYAKNARNIVITNRTQSKAEALAEELGTNRVLPYESYKEHLH---EFDIIITAVST------KEYILNAAEMQQSMAKRRLKPVIILDLGLPRNVDPEVGALQNMFLKDIDALKHIIDKNLERRRAELPKVKAIIDEE 329          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_CAMC1 (Glutamyl-tRNA reductase OS=Campylobacter concisus (strain 13826) GN=hemA PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.705e-14
Identity = 58/203 (28.57%), Postives = 103/203 (50.74%), Query Frame = 1
Query:   22 GRNISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEESN 630
            G +IS +  +A     +VR ET I              A          TA  +V+GAG+MG+L  KHL++ G  +++++NRS ERV  + + L G    +  + ++     + D++F+STA+   +   + ++   P E      R F DI+VPR++   + + E   VY VD L+E+V  N   R  +A +A +I+ ++++
Sbjct:  136 GEDISKIIHYACKCAAKVRNETQISKNPISVSSVAVAKAKEIFGTLEGKTA--IVVGAGEMGELAAKHLISSG-AEVIIINRSSERVEQLVDSL-GDNASWDSILKLKEYVNNYDLIFSSTAAPHAIITGEIIE---PREFH----RYFFDIAVPRDID--LLNTELISVYTVDSLEEIVRKNLALREEQAQKAYSIVGQDTS 325          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_BURP6 (Glutamyl-tRNA reductase OS=Burkholderia pseudomallei (strain 668) GN=hemA PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.705e-14
Identity = 60/202 (29.70%), Postives = 95/202 (47.03%), Query Frame = 1
Query:   22 GRNISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLR----LFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAII 615
            G  ++ LF+   +V K VR  T I             LA     +   A  R+L IGAG+M +L   H  A+G  +++V NR+ ER A + E   G  +   PL+++ +   + D++ + TAS  P+        L  VE AV   R      +D++VPR++   V  ++   +Y VDDL  +V      R     +A+AII
Sbjct:  142 GTYLNQLFQRTFAVAKEVRGTTEIGAQSVSMAAAAVRLAQRIFEQV--AQQRVLFIGAGEMIELCATHFAAQGPRELIVANRTAERGAKLAERFGGRAM---PLADLPARMHEFDIIVSCTASTLPII------GLGAVERAVKARRHRPIFMVDLAVPRDIEPEVGKLKDVFLYTVDDLGAIVREGNASRQAAVAQAEAII 332          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_ALCBS (Glutamyl-tRNA reductase OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=hemA PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.705e-14
Identity = 59/201 (29.35%), Postives = 96/201 (47.76%), Query Frame = 1
Query:   31 ISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLR----LFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISE 621
            +S LF+   SV KR+RTET I              A     +   +  R L+IGAG+M +LV +HL  +   ++ + NR++ER + +   + G  I    L E+      AD++ + TA+  P+  K        VE A+   R      +DI+VPR++   V ++    +Y VD L+E +  N   R + A EA  +I +
Sbjct:  135 LSRLFQEVFSVAKRIRTETGIGANPVSVAYAAVSFARHIFADLKKS--RALLIGAGEMIELVARHLSEQQVQEITIANRTQERASELAAAVGGRGI---SLEELPVALERADILISCTAAPLPIMGKG------MVERALKKRRHRPMFMVDIAVPRDIEPEVGELGDVYLYTVDHLQEAIQENVRSRQQAAQEASELIRD 324          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_NITSB (Glutamyl-tRNA reductase OS=Nitratiruptor sp. (strain SB155-2) GN=hemA PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.145e-14
Identity = 57/205 (27.80%), Postives = 103/205 (50.24%), Query Frame = 1
Query:   22 GRNISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARV--YNVDDLKEVVAANKEDRLRKAMEAQAIISEESN 630
            G+ +  +  +A    K VR+ T+I             +A  KL      +A  LV+GAG+MG+L  KHL++ GC  +++V R  E+   + +E++  +I  + +S +        ++F++T+S+ P+  KD V++           R + D++VPR+    + ++  AR+  + VDDLKE+V  N   R  +A  A  I+    N
Sbjct:  136 GQKLGRVMHYAFKCSKEVRSSTDITRSPVSVASAAVSMAKEKLGNLGGMSA--LVVGAGEMGRLAAKHLISHGC-NVILVGRDLEKTKTVAQEID-PDIRVEHVSNLQKLINSYRLLFSATSSKNPVITKDMVKE-------QSFDRYWFDMAVPRD----IEEIYVARIHYFAVDDLKEIVNKNMAFREEQARNAYKIVGHHVN 325          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_METMA (Glutamyl-tRNA reductase OS=Methanosarcina mazei GN=hemA PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.145e-14
Identity = 61/207 (29.47%), Postives = 99/207 (47.83%), Query Frame = 1
Query:   22 GRNISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEESNSLQL 642
            G+ +   F+ AI VGKR+R ET I            +LA             +LVIGAG++G LV K L  K    + + NR+ ++   I  EL G  +    + + L     ADVV + T +   +  ++ V++   ++     L L IDI+ PR++   V ++E   + N+D+L+ +       R  +A +A+AII EE   L L
Sbjct:  126 GKILETAFEKAIQVGKRIRNETRINKGSVSIGSAAVDLAEDIF--GGLTGKNVLVIGAGEIGVLVAKALAEKDIEAIYIANRTYKKAEEIAYELGGHAVRLDDIRDYLP---GADVVISGTGAPHYILTREIVEEA--IKCRERKL-LLIDIANPRDIEESVVELENVELCNIDNLRVISERTLRMRKEEAKKAEAIIQEEIRLLNL 324          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_CORDI (Glutamyl-tRNA reductase OS=Corynebacterium diphtheriae GN=hemA PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.145e-14
Identity = 58/203 (28.57%), Postives = 95/203 (46.80%), Query Frame = 1
Query:   22 GRNISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREEL--NGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEE 624
            G  + GL + ++  GKRV TET+I            + AL ++  ++ A  R LV+GAG M  L   HL   G   + V NR+ ER   + +     GV          +    D DVV ++T +           +   + AA G L + ID+S+PR++   VA+V    + N++ L++V ++ +     K   AQ I++EE
Sbjct:  135 GPALHGLVQASLHTGKRVHTETDIDDAGASMVSFACDEALAQMSATNFAGCRALVLGAGAMASLAATHLGRLGIEHITVANRTFERAQRLADHAVEAGVAASAIEFERRMDVLCDVDVVVSATGANT------FTIEAANIPAAHGDL-MMIDLSLPRDISDDVAEVPGVHLVNIEKLRDVASSGE----AKDHAAQRIVAEE 326          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_BURVG (Glutamyl-tRNA reductase OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=hemA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.026e-14
Identity = 61/202 (30.20%), Postives = 94/202 (46.53%), Query Frame = 1
Query:   22 GRNISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLR----LFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAII 615
            G  ++ LF+   +V K VR  T I             LA     +   A  R+L IGAG+M +L   H  A+G  ++VV NR+ ER   + E   G  +   PLS++ +   + D++ + TAS  P+        L  VE AV   R      +D++VPR++   V  ++   +Y VDDL  +V      R     +A+AII
Sbjct:  140 GTYLNQLFQRTFAVAKEVRGTTEIGTQSVSMAAAAVRLAQRIFEKV--ADQRVLFIGAGEMIELCATHFAAQGPRELVVANRTAERGQRLAERFGGRAM---PLSDLPTRMHEFDIIVSCTASTLPII------GLGAVERAVKARRHRPIFMVDLAVPRDIEPEVGKLKDVFLYTVDDLGAIVREGNASRQAAVAQAEAII 330          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_EXISA (Glutamyl-tRNA reductase OS=Exiguobacterium sp. (strain ATCC BAA-1283 / AT1b) GN=hemA PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.048e-13
Identity = 60/211 (28.44%), Postives = 99/211 (46.92%), Query Frame = 1
Query:   22 GRNISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLR-----LFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEESNSLQ 639
            G   + LFK A+++ KR  T+T I             LA     +      +++V+GAG+ G+L   +L   G  ++ V NR+E +  A+ ++  G       + E+     DAD++ +ST ++  +   D V       AA   LR     L IDI+VPR++   VA +    +++VDDL  +V  N E RL +A + +  I E     Q
Sbjct:  135 GTVFNKLFKEAVTLAKRAHTDTQIGEMSVSVSSAAVTLAQEMYQQLEDK--QVVVVGAGETGELTTLNLFEAGAKQIAVFNRTESKAKAVADKFKGRA---HSIREIACGLLDADILISSTGAKEAVIGYDDV-------AAAQLLRRERPLLLIDIAVPRDIDPAVATLPGVHLFDVDDLNGIVNKNLEARLVEAEKIEMKIDEAIQEFQ 333          
The following BLAST results are available for this feature:
BLAST of FC930965 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 465
Match NameE-valueIdentityDescription
HEM1_FRATF4.705e-1427.78Glutamyl-tRNA reductase OS=Francisella tularensis ... [more]
HEM1_CHLTE4.705e-1427.55Glutamyl-tRNA reductase OS=Chlorobium tepidum GN=h... [more]
HEM1_CAMC14.705e-1428.57Glutamyl-tRNA reductase OS=Campylobacter concisus ... [more]
HEM1_BURP64.705e-1429.70Glutamyl-tRNA reductase OS=Burkholderia pseudomall... [more]
HEM1_ALCBS4.705e-1429.35Glutamyl-tRNA reductase OS=Alcanivorax borkumensis... [more]
HEM1_NITSB6.145e-1427.80Glutamyl-tRNA reductase OS=Nitratiruptor sp. (stra... [more]
HEM1_METMA6.145e-1429.47Glutamyl-tRNA reductase OS=Methanosarcina mazei GN... [more]
HEM1_CORDI6.145e-1428.57Glutamyl-tRNA reductase OS=Corynebacterium diphthe... [more]
HEM1_BURVG8.026e-1430.20Glutamyl-tRNA reductase OS=Burkholderia vietnamien... [more]
HEM1_EXISA1.048e-1328.44Glutamyl-tRNA reductase OS=Exiguobacterium sp. (st... [more]

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Properties
Property NameValue
Genbank descriptionC34110H11EF PostHarvP1 Citrus clementina cDNA clone C34110H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930965 ID=FC930965; Name=FC930965; organism=Citrus clementina; type=EST; length=694bp
GGTCAAGGAGTTGTTGGATTTGGAAGGAACATTAGCGGACTGTTCAAGCA
TGCAATCAGTGTTGGTAAGCGGGTTAGAACCGAGACAAATATTGCTGCTG
GGGCTGTTTCCGTCAGCTCTGCTGCTGTTGAACTGGCTTTGATGAAGCTT
CCTGAATCTTCACATGCCACTGCCCGGATGTTGGTTATTGGAGCAGGCAA
GATGGGGAAGCTTGTGATAAAACACTTGGTAGCCAAAGGATGCACTAAGA
TGGTGGTTGTAAACAGGTCAGAAGAGAGAGTTGCAGCCATCCGCGAGGAG
CTCAACGGTGTTGAGATAATTTATAAACCTCTCTCAGAAATGTTGTCCTG
TGCTGCTGATGCAGATGTGGTCTTCACCAGCACAGCATCTGAAGCTCCAT
TATTCTTGAAGGATCATGTTCAGGACCTTCCTCCCGTTGAGGCTGCAGTT
GGGGGTTTGAGGCTCTTTATTGATATCTCCGTTCCTCGTAATGTGGGCTC
TTGTGTTGCAGATGTTGAAACTGCACGGGTTTACAATGTTGATGACCTTA
AGGAGGTAGTGGCTGCTAATAAAGAGGACAGGCTCCGAAAAGCAATGGAA
GCTCAGGCTATTATCTCTGAGGAATCAAACAGTTTGCAGCTTGGAGGGAT
TCATTGGAGACTGTTCCTACTATTAAGAATTGAGAGCTTATGCT
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