FC930965

Overview
NameFC930965
Unique NameFC930965
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12766 contig Ccv1_Contig12766:1020..1713. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_ALISL (Glutamyl-tRNA reductase OS=Aliivibrio salmonicida (strain LFI1238) GN=hemA PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.659e-25
Identity = 76/203 (37.44%), Postives = 114/203 (56.16%), Query Frame = 1
Query:   31 ISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLR----LFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEES 627
            +  LF+   SV KRVRTETNI             LA       + +T  ++++GAG+  +LV KHL   GC +++V NR+ ER   + ++ N   I    + E LS    AD++ +STAS  P+  K  V      E+A+   R    LF+DI+VPR++ S VAD+    +Y+VDDLK ++  N E R  +A++A+AI+SEES
Sbjct:  137 VEKLFQSDFSVAKRVRTETNIGGNAVSVAYAACTLARQIFESLAEST--VMLVGAGETIELVAKHLNDAGCKQLIVANRTRERAMILADQFNADVISLPEIPEHLS---KADIIISSTASPLPIIGKGMV------ESALKQRRHQPMLFVDIAVPRDIESEVADLNDVYLYSVDDLKSIIDHNIEQRKIEAIQAEAIVSEES 328          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_VIBVU (Glutamyl-tRNA reductase OS=Vibrio vulnificus GN=hemA PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.473e-25
Identity = 77/204 (37.75%), Postives = 115/204 (56.37%), Query Frame = 1
Query:   28 NISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLR----LFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEES 627
            ++  LF+   SV KRVRTET+I             LA         +T  +L++GAG+  +LV KHL A GC+KM+V NR+ ER   + E+ +   I    L E+ +  A AD+V +STAS  P+  K  V      E A+   R    L +DI+VPR+V + V D+  A +Y VDDL+ ++ +N E R  +A++A+AI++EES
Sbjct:  135 SLEKLFQKTFSVAKRVRTETDIGGNAVSVAYAACTLAKHIFESLEKST--VLLVGAGETIELVAKHLHANGCSKMIVANRTRERALTLAEQFDAQVI---SLQEIPNHLAKADIVISSTASPLPIIGKGMV------ETALKQRRHQPMLLVDIAVPRDVEAQVGDLNDAYLYTVDDLQSIIDSNIEQRKVEAIQAEAIVAEES 327          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_VIBCM (Glutamyl-tRNA reductase OS=Vibrio cholerae serotype O1 (strain M66-2) GN=hemA PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.925e-25
Identity = 76/196 (38.78%), Postives = 114/196 (58.16%), Query Frame = 1
Query:   40 LFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEES 627
            LF+ A SV KRVRTET I             LA  K    S A A +L++GAG+  +LV KHL    C +M+V NR+ ER  ++ ++  G ++I   L+E+    A AD+V +STAS  P+  K  V+    ++A      L +DI+VPR++   V  +  A +Y+VDDL+ +V +N E R  +A++A+AI+SEES
Sbjct:  139 LFQKAFSVAKRVRTETEIGGSAVSVAYAACTLA--KHIFESLADATVLLVGAGETIELVAKHLAGHHCKRMIVANRTRERALSLAQQF-GADVI--ALNEIPDYLAQADIVISSTASPLPIIGKGMVESA--LKARRHQPMLLVDIAVPRDIEPQVGKLNDAYLYSVDDLQSIVDSNIEQRKVEAIQAEAIVSEES 327          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_VIBCH (Glutamyl-tRNA reductase OS=Vibrio cholerae GN=hemA PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.925e-25
Identity = 76/196 (38.78%), Postives = 114/196 (58.16%), Query Frame = 1
Query:   40 LFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEES 627
            LF+ A SV KRVRTET I             LA  K    S A A +L++GAG+  +LV KHL    C +M+V NR+ ER  ++ ++  G ++I   L+E+    A AD+V +STAS  P+  K  V+    ++A      L +DI+VPR++   V  +  A +Y+VDDL+ +V +N E R  +A++A+AI+SEES
Sbjct:  139 LFQKAFSVAKRVRTETEIGGSAVSVAYAACTLA--KHIFESLADATVLLVGAGETIELVAKHLAGHHCKRMIVANRTRERALSLAQQF-GADVI--ALNEIPDYLAQADIVISSTASPLPIIGKGMVESA--LKARRHQPMLLVDIAVPRDIEPQVGKLNDAYLYSVDDLQSIVDSNIEQRKVEAIQAEAIVSEES 327          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_VIBC3 (Glutamyl-tRNA reductase OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=hemA PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.925e-25
Identity = 76/196 (38.78%), Postives = 114/196 (58.16%), Query Frame = 1
Query:   40 LFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEES 627
            LF+ A SV KRVRTET I             LA  K    S A A +L++GAG+  +LV KHL    C +M+V NR+ ER  ++ ++  G ++I   L+E+    A AD+V +STAS  P+  K  V+    ++A      L +DI+VPR++   V  +  A +Y+VDDL+ +V +N E R  +A++A+AI+SEES
Sbjct:  139 LFQKAFSVAKRVRTETEIGGSAVSVAYAACTLA--KHIFESLADATVLLVGAGETIELVAKHLAGHHCKRMIVANRTRERALSLAQQF-GADVI--ALNEIPDYLAQADIVISSTASPLPIIGKGMVESA--LKARRHQPMLLVDIAVPRDIEPQVGKLNDAYLYSVDDLQSIVDSNIEQRKVEAIQAEAIVSEES 327          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_GLOVI (Glutamyl-tRNA reductase OS=Gloeobacter violaceus GN=hemA PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.925e-25
Identity = 69/203 (33.99%), Postives = 116/203 (57.14%), Query Frame = 1
Query:   16 GFGRNISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEE 624
            G  R ++ LFK AI+ GKRVR++TNI            E+AL K  +      R LV+GAGKMG+L+++HL+AKG  +++V+NRS E+ A + E+  G+ +    + E+ +    +D++FT T +  PL   + +  L   ++      +  DI+VPRNV + V ++   +++NVD LK+VV  N+  R     + + I+ E+
Sbjct:  133 GVDRVLNQLFKTAITAGKRVRSDTNIGTGAVSVSSAAVEMALRK--KGPLHNQRCLVVGAGKMGELLVRHLLAKGARQIIVLNRSLEKAAQMVEQF-GLMLPVATVDELTNYVPCSDLIFTCTGATEPLLTLEKMSSLRRDQSL-----MIFDIAVPRNVATEVDELPNVQLFNVDHLKQVVEENRAYRQLMVTQCEEILLEQ 327          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_PERMH (Glutamyl-tRNA reductase OS=Persephonella marina (strain DSM 14350 / EX-H1) GN=hemA PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.724e-24
Identity = 70/209 (33.49%), Postives = 110/209 (52.63%), Query Frame = 1
Query:   31 ISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEESNSLQLGGIHW 657
            ++ LF  A++V K++RT T I            ELA     + S     +L++GAG+M +L  +HL + G   + V NR+ E+   + EE  G  I +  L E L    ++D+V  ST ++ P+  K+H +++  +    G     IDISVPRNV   V DV+   +YN+DDLK VV  N E+R   A+ A+ ++ EE +  +    HW
Sbjct:  138 LTRLFDKALNVSKKIRTSTGISKRAVSISYAAVELAKKIFGDLSDKN--VLLLGAGEMAELAARHLSSSGVKHIFVSNRTFEKAVQLAEEFGGSAIRFDKLFEFLP---ESDIVIVSTGAKEPILRKEHFEEINRIRK--GDPVFIIDISVPRNVAEDVNDVDNVYLYNIDDLKVVVDKNLEERKLAALSAEMMLDEEVHKFE----HW 335          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_VIBVY (Glutamyl-tRNA reductase OS=Vibrio vulnificus (strain YJ016) GN=hemA PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.016e-24
Identity = 75/204 (36.76%), Postives = 113/204 (55.39%), Query Frame = 1
Query:   28 NISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLR----LFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEES 627
            ++  LF+   SV KRVRTET+I             LA         +T  +L++GAG+  +LV KHL A GC+KM+V NR+ ER   + E+ +   I  + +   L   A AD+V +STAS  P+  K  V      E A+   R    L +DI+VPR+V + V ++  A +Y VDDL+ ++  N E R  +A++A+AI++EES
Sbjct:  135 SLEKLFQKTFSVAKRVRTETDIGGNAVSVAYAACTLAKHIFESLEKST--VLLVGAGETIELVAKHLHANGCSKMIVANRTRERALTLAEQFDAQVISLQDIPNHL---AKADIVISSTASPLPIIGKGMV------ETALKQRRHQPMLLVDIAVPRDVEAQVGELNDAYLYTVDDLQSIIDNNIEQRKVEAIQAEAIVAEES 327          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_PELTS (Glutamyl-tRNA reductase OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=hemA PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.016e-24
Identity = 71/200 (35.50%), Postives = 111/200 (55.50%), Query Frame = 1
Query:   25 RNISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEE 624
            R ++ LF+ AI+VGKRVRTET I            ELA   L   S     +LVIGAGKM +L  +HLVA G + ++V NRS ER  A+ E+  G  + +    E+  C   AD+V + TA+   +   + V  +  ++   G     +DI+VPR++ + V ++    ++++DDLK V+  N  +R + A++A+ II EE
Sbjct:  136 RVLNTLFQQAITVGKRVRTETGIDRNAVSISYAAVELARQHL--GSLDGRSVLVIGAGKMSELTARHLVANGVSSVIVSNRSFERAVALAEQFRGRAVRF---DELYRCMEAADIVISCTAASHCVVKAEEVSRV--MDKRRGRAIFMVDIAVPRDIEAEVGNLAGVTLFDIDDLKNVIDQNLAERKQAAVKAEEIIEEE 328          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_DESRM (Glutamyl-tRNA reductase OS=Desulfotomaculum reducens (strain MI-1) GN=hemA PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.117e-23
Identity = 70/200 (35.00%), Postives = 114/200 (57.00%), Query Frame = 1
Query:   31 ISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEESN 630
            ++ LF+ AI+ GKRVRTET I            ELA       S  +  +LV+GAG+M +L + +LVA G + ++V NRS +R   + E+ +G  + +  L + ++    AD+V +STA++  +     +Q +  +E  V    + IDI+VPR++   V  +   ++Y+VD L+ VV AN E+R R A++A+ II EE N
Sbjct:  138 LNTLFQQAITTGKRVRTETGIDQNPVSIPYAAVELAKQGFGTLSGRS--VLVVGAGEMSELTVVNLVANGVSSVIVSNRSYDRAVQLAEKFDGTAVKFDQLFQYMN---RADIVISSTAAQHYVIKTSDMQKV--MEQRVDQPIMMIDIAVPRDIDPEVRRIPNVKLYDVDHLQNVVDANLEERRRAAVQAEGIIEEELN 330          
The following BLAST results are available for this feature:
BLAST of FC930965 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 465
Match NameE-valueIdentityDescription
HEM1_ALISL2.659e-2537.44Glutamyl-tRNA reductase OS=Aliivibrio salmonicida ... [more]
HEM1_VIBVU3.473e-2537.75Glutamyl-tRNA reductase OS=Vibrio vulnificus GN=he... [more]
HEM1_VIBCM5.925e-2538.78Glutamyl-tRNA reductase OS=Vibrio cholerae serotyp... [more]
HEM1_VIBCH5.925e-2538.78Glutamyl-tRNA reductase OS=Vibrio cholerae GN=hemA... [more]
HEM1_VIBC35.925e-2538.78Glutamyl-tRNA reductase OS=Vibrio cholerae serotyp... [more]
HEM1_GLOVI5.925e-2533.99Glutamyl-tRNA reductase OS=Gloeobacter violaceus G... [more]
HEM1_PERMH1.724e-2433.49Glutamyl-tRNA reductase OS=Persephonella marina (s... [more]
HEM1_VIBVY5.016e-2436.76Glutamyl-tRNA reductase OS=Vibrio vulnificus (stra... [more]
HEM1_PELTS5.016e-2435.50Glutamyl-tRNA reductase OS=Pelotomaculum thermopro... [more]
HEM1_DESRM1.117e-2335.00Glutamyl-tRNA reductase OS=Desulfotomaculum reduce... [more]

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Properties
Property NameValue
Genbank descriptionC34110H11EF PostHarvP1 Citrus clementina cDNA clone C34110H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930965 ID=FC930965; Name=FC930965; organism=Citrus clementina; type=EST; length=694bp
GGTCAAGGAGTTGTTGGATTTGGAAGGAACATTAGCGGACTGTTCAAGCA
TGCAATCAGTGTTGGTAAGCGGGTTAGAACCGAGACAAATATTGCTGCTG
GGGCTGTTTCCGTCAGCTCTGCTGCTGTTGAACTGGCTTTGATGAAGCTT
CCTGAATCTTCACATGCCACTGCCCGGATGTTGGTTATTGGAGCAGGCAA
GATGGGGAAGCTTGTGATAAAACACTTGGTAGCCAAAGGATGCACTAAGA
TGGTGGTTGTAAACAGGTCAGAAGAGAGAGTTGCAGCCATCCGCGAGGAG
CTCAACGGTGTTGAGATAATTTATAAACCTCTCTCAGAAATGTTGTCCTG
TGCTGCTGATGCAGATGTGGTCTTCACCAGCACAGCATCTGAAGCTCCAT
TATTCTTGAAGGATCATGTTCAGGACCTTCCTCCCGTTGAGGCTGCAGTT
GGGGGTTTGAGGCTCTTTATTGATATCTCCGTTCCTCGTAATGTGGGCTC
TTGTGTTGCAGATGTTGAAACTGCACGGGTTTACAATGTTGATGACCTTA
AGGAGGTAGTGGCTGCTAATAAAGAGGACAGGCTCCGAAAAGCAATGGAA
GCTCAGGCTATTATCTCTGAGGAATCAAACAGTTTGCAGCTTGGAGGGAT
TCATTGGAGACTGTTCCTACTATTAAGAATTGAGAGCTTATGCT
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