FC930974

Overview
NameFC930974
Unique NameFC930974
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length513
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK1_CAEEL (Probable S-adenosylmethionine synthetase 1 OS=Caenorhabditis elegans GN=sams-1 PE=2 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 3.085e-57
Identity = 100/170 (58.82%), Postives = 132/170 (77.65%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRCI 512
            T E MPL+ +L+ K+ A+L ++R+NGT PW+RPD K+QVT+EY + +GA +P+RVHTV++STQH   VT +++   +   VIK VIP   LD+ T+FH+NP G F++GGP GDAG+TGRKII+DTYGGW AHGGGAFSGKDPTKVDRS AY  R  A S+V +GLA+R +
Sbjct:  133 TEETMPLTLILSHKINAELHKLRRNGTLPWVRPDSKSQVTIEYESRHGATIPLRVHTVVVSTQHSPDVTLEKLRETILADVIKKVIPASLLDESTVFHINPCGTFIVGGPMGDAGVTGRKIIVDTYGGWGAHGGGAFSGKDPTKVDRSAAYAARWVATSLVKAGLAKRVL 302          
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_GEOTN (S-adenosylmethionine synthetase OS=Geobacillus thermodenitrificans (strain NG80-2) GN=metK PE=3 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 4.029e-57
Identity = 108/169 (63.91%), Postives = 132/169 (78.11%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRC 509
            T ELMPL   LA +L  +L EVRK    P+LRPDGKTQVT+EY +ENG   PVRV T++ISTQH   + +D+I  D+K+HVIKP++P + LD+ T + +NP+GRFVIGGP GDAGLTGRKII+DTYGG+  HGGGAFSGKDPTKVDRS AY  R  AK+IVA+GLA +C
Sbjct:  144 TEELMPLPISLAHRLSRRLAEVRKTDVLPYLRPDGKTQVTIEY-DENGK--PVRVDTIVISTQHHPEIEHDQIERDMKEHVIKPIVPAELLDENTKYFINPTGRFVIGGPQGDAGLTGRKIIVDTYGGYARHGGGAFSGKDPTKVDRSAAYAARYVAKNIVAAGLADKC 309          
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_CLOCE (S-adenosylmethionine synthetase OS=Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) GN=metK PE=3 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 4.029e-57
Identity = 109/169 (64.50%), Postives = 132/169 (78.11%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRC 509
            TPELMP+  +LA KL  KL+EVRKNG   +LRPDGK+QVTVEY  +     PVRV TV+ISTQH   V++D I  D+ +HVI PVIP + LD+ T + +NP+GRFV+GGP GD+GLTGRKII+DTYGG+  HGGGAFSGKDPTKVDRS AY  R  AK+IVASG+AR+C
Sbjct:  142 TPELMPMPIILAHKLTMKLSEVRKNGKVKYLRPDGKSQVTVEYDGDK----PVRVDTVVISTQHGADVSHDTIEKDIMEHVIIPVIPRELLDEGTKYFINPTGRFVVGGPQGDSGLTGRKIIVDTYGGYARHGGGAFSGKDPTKVDRSAAYAARYVAKNIVASGIARKC 306          
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_LEIIN (S-adenosylmethionine synthetase OS=Leishmania infantum GN=METK PE=2 SV=2)

HSP 1 Score: 219.55 bits (558), Expect = 6.873e-57
Identity = 112/174 (64.37%), Postives = 129/174 (74.14%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENG----AMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRCI 512
            T  LMPL++ LA  L  K +E+R++G+  W RPD KTQVTVEY  +       + P RV  VLIS QHDE VTND+I+ DL + VIK VIP   LD +T + LNPSGRFV GGPHGDAGLTGRKII+DTYGGW AHGGGAFSGKDP+KVDRS AY  R  AKSIVA GLARRC+
Sbjct:  133 TETLMPLTYELARGLAKKYSELRRSGSLEWARPDAKTQVTVEYDYDTREGKQVLTPKRVAVVLISAQHDEHVTNDKISVDLMEKVIKAVIPANMLDAETKYWLNPSGRFVRGGPHGDAGLTGRKIIVDTYGGWGAHGGGAFSGKDPSKVDRSAAYAARWIAKSIVAGGLARRCL 306          
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_GEOSW (S-adenosylmethionine synthetase OS=Geobacillus sp. (strain WCH70) GN=metK PE=3 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 8.977e-57
Identity = 106/169 (62.72%), Postives = 132/169 (78.11%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRC 509
            T ELMPL   LA +L  +L+EVRK    P+LRPDGKTQVTVEY +ENG   PVR+ T+++S QH   +T ++I  D+K+HVIKP++P + +D+ T + +NP+GRFVIGGP GDAGLTGRKII+DTYGG+  HGGGAFSGKDPTKVDRS AY  R  AK+IVASGLA +C
Sbjct:  144 TKELMPLPISLAHRLARRLSEVRKEAILPYLRPDGKTQVTVEY-DENGK--PVRIDTIVVSAQHHPEITQEQIERDIKEHVIKPIVPAELIDENTKYFINPTGRFVIGGPQGDAGLTGRKIIVDTYGGYARHGGGAFSGKDPTKVDRSAAYAARYVAKNIVASGLADKC 309          
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_BACSK (S-adenosylmethionine synthetase OS=Bacillus clausii (strain KSM-K16) GN=metK PE=3 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 8.977e-57
Identity = 110/169 (65.09%), Postives = 134/169 (79.29%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRC 509
            T ELMPL   L+ KL  +LTEVRKNGT  +LRPDGKTQVT+EY +EN    PVRV T+++STQH   VT ++I ADLK+HVI+ V+P   +D++T + +NP+GRFVIGGP GDAGLTGRKII+DTYGG+  HGGGAFSGKD TKVDRSGAY  R  AK+IVA+GLA +C
Sbjct:  146 TEELMPLPISLSHKLSRRLTEVRKNGTLGYLRPDGKTQVTIEY-DENDT--PVRVDTIVLSTQHAPEVTLEQIQADLKEHVIEAVVPSALIDEETKYFINPTGRFVIGGPQGDAGLTGRKIIVDTYGGYARHGGGAFSGKDATKVDRSGAYAARYVAKNIVAAGLADKC 311          
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_THEP3 (S-adenosylmethionine synthetase OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=metK PE=3 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 2.612e-56
Identity = 105/169 (62.13%), Postives = 131/169 (77.51%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRC 509
            T ELMP+  +LA KL  +L EVRKNGT  +LRPDGKTQVTVEY ++     PVRV +V++S QH   + +D I  D+ +HVIKP+IP+  +DDKT   +NP+GRFVIGGP GD+GLTGRKII+DTYGG+  HGGGAFSGKDPTKVDRS +Y  R  AK+IVA+GLA++C
Sbjct:  141 TEELMPMPIMLAHKLARRLAEVRKNGTLSYLRPDGKTQVTVEYEDDK----PVRVDSVVVSAQHAPEIDHDTIERDIIEHVIKPIIPENMIDDKTKIFVNPTGRFVIGGPQGDSGLTGRKIIVDTYGGYARHGGGAFSGKDPTKVDRSASYAARYVAKNIVAAGLAKKC 305          
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_BACHD (S-adenosylmethionine synthetase OS=Bacillus halodurans GN=metK PE=3 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 2.612e-56
Identity = 108/169 (63.91%), Postives = 134/169 (79.29%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRC 509
            TPELMPL   L+ KL  +L+E RK    P+LRPDGKTQVTVEY +EN   V  R+ T++ISTQH   VT ++I +DLKQHVI+ V+P++ +D++T + +NP+GRFVIGGP GDAGLTGRKII+DTYGG+  HGGGAFSGKDPTKVDRSGAY  R  AK+IVA+GLA +C
Sbjct:  146 TPELMPLPISLSHKLARRLSEARKGEILPYLRPDGKTQVTVEY-DENDQSV--RIDTIVISTQHHPEVTLEQIESDLKQHVIRSVVPEELIDEETKYFINPTGRFVIGGPQGDAGLTGRKIIVDTYGGYARHGGGAFSGKDPTKVDRSGAYAARYVAKNIVAAGLADKC 311          
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_PELTS (S-adenosylmethionine synthetase OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=metK PE=3 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 3.411e-56
Identity = 109/169 (64.50%), Postives = 130/169 (76.92%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRC 509
            TPELMPL   LA +L  +L EVRK+   P+LRPDGKTQVTVEY  ENG   PVRV T++ISTQH   VT DEI + + +HV+KPV+P ++LD  T F +NP+GRFVIGGP GD GLTGRKII+DTYGG   HGGG+FSGKDPTKVDRS +Y  R  AK+IVA+GLA +C
Sbjct:  142 TPELMPLPISLAHRLARRLAEVRKSRLLPYLRPDGKTQVTVEY--ENGR--PVRVDTIVISTQHHPRVTLDEIRSGVLEHVVKPVVPPEFLDGSTRFFVNPTGRFVIGGPQGDTGLTGRKIIVDTYGGMARHGGGSFSGKDPTKVDRSASYAARYVAKNIVAAGLAEKC 306          
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_BACP2 (S-adenosylmethionine synthetase OS=Bacillus pumilus (strain SAFR-032) GN=metK PE=3 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 3.411e-56
Identity = 109/169 (64.50%), Postives = 132/169 (78.11%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRC 509
            T ELMPL   LA KL  +LTEVRK+ T  +LRPDGKTQVTVEY ++N    PVR+ TV+ISTQH   VT ++I +DLK+HVI PV+P + +D++T + +NP+GRFVIGGP GDAGLTGRKII+DTYGG+  HGGGAFSGKD TKVDRS AY  R  AK+IVA+GLA  C
Sbjct:  144 TEELMPLPISLAHKLSLRLTEVRKDQTLAYLRPDGKTQVTVEYDDQNK---PVRIDTVVISTQHAPEVTLEQIQSDLKEHVISPVVPSELIDEQTKYFINPTGRFVIGGPQGDAGLTGRKIIVDTYGGYARHGGGAFSGKDATKVDRSAAYAARYVAKNIVAAGLADSC 309          
The following BLAST results are available for this feature:
BLAST of FC930974 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK1_CAEEL3.085e-5758.82Probable S-adenosylmethionine synthetase 1 OS=Caen... [more]
METK_GEOTN4.029e-5763.91S-adenosylmethionine synthetase OS=Geobacillus the... [more]
METK_CLOCE4.029e-5764.50S-adenosylmethionine synthetase OS=Clostridium cel... [more]
METK_LEIIN6.873e-5764.37S-adenosylmethionine synthetase OS=Leishmania infa... [more]
METK_GEOSW8.977e-5762.72S-adenosylmethionine synthetase OS=Geobacillus sp.... [more]
METK_BACSK8.977e-5765.09S-adenosylmethionine synthetase OS=Bacillus clausi... [more]
METK_THEP32.612e-5662.13S-adenosylmethionine synthetase OS=Thermoanaerobac... [more]
METK_BACHD2.612e-5663.91S-adenosylmethionine synthetase OS=Bacillus halodu... [more]
METK_PELTS3.411e-5664.50S-adenosylmethionine synthetase OS=Pelotomaculum t... [more]
METK_BACP23.411e-5664.50S-adenosylmethionine synthetase OS=Bacillus pumilu... [more]

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Properties
Property NameValue
Genbank descriptionC34100A09EF PostHarvP1 Citrus clementina cDNA clone C34100A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930974 ID=FC930974; Name=FC930974; organism=Citrus clementina; type=EST; length=513bp
GGACTCCTGAGTTGATGCCTTTGAGTCATGTGCTTGCAACAAAGCTTGGT
GCTAAGCTTACAGAAGTGAGGAAGAATGGGACCTGTCCGTGGCTGAGGCC
AGATGGCAAAACACAAGTCACTGTTGAGTATTACAATGAGAATGGCGCCA
TGGTTCCTGTTCGTGTCCATACTGTGCTCATCTCAACTCAGCACGATGAG
ACTGTAACTAATGATGAGATTGCTGCAGATCTCAAGCAACATGTGATCAA
GCCTGTGATTCCTGACAAGTACTTGGATGACAAAACTATTTTCCATCTTA
ACCCATCTGGCCGTTTTGTGATTGGTGGCCCTCACGGTGATGCTGGGCTC
ACCGGCCGGAAGATTATTATTGATACTTATGGTGGCTGGNGGGCACACGG
TGGTGGGGCTTTCTCAGGGAAAGATCCTACCAAGGTTGATAGAAGCGGTG
CTTACATTGTAAGGCAAGCTGCTAAGAGTATTGTGGCAAGCGGGCTTGCC
AGGAGATGCATTG
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