FC930974

Overview
NameFC930974
Unique NameFC930974
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length513
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_SYNS3 (S-adenosylmethionine synthetase OS=Synechococcus sp. (strain CC9311) GN=metK PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 5.459e-46
Identity = 99/179 (55.31%), Postives = 119/179 (66.48%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQH--------DETVTNDEIAADLKQHVIKPVIPDKYLDDKTI---FHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARR 506
            TPELMPL   LA +L  +L EVR NGT  +L PDGKTQV+V Y N+     PV + T+LISTQH        DE    + I+ DL  HV+ P   D  L        + +NP+G+FV+GGP GDAGLTGRKII+DTYGG+  HGGGAFSGKDPTKVDRS AY  R  AK++VA+GLA R
Sbjct:  138 TPELMPLPISLAHRLARRLAEVRHNGTLDYLLPDGKTQVSVVYENDK----PVEIDTILISTQHTAEVTGLTDEQEVRNRISEDLWTHVVLPATADLPLKPDRANCRYLVNPTGKFVVGGPQGDAGLTGRKIIVDTYGGYARHGGGAFSGKDPTKVDRSAAYAARYVAKALVAAGLANR 312          
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_RALEJ (S-adenosylmethionine synthetase OS=Ralstonia eutropha (strain JMP134) GN=metK PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 5.459e-46
Identity = 92/169 (54.44%), Postives = 120/169 (71.01%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRC 509
            TPELMP     + +L  + +++R++G  PWLRPD K+QVTV Y +      P  V TV++STQH   +T  +I   + + +IKPV+P + L D T + +NP+GRFVIGGP GD GLTGRKII+DTYGG   HGGGAFSGKDP+KVDRS AY  R  AK++VA+GLAR+C
Sbjct:  134 TPELMPFPIYYSHRLVERQSQLRRDGRLPWLRPDAKSQVTVRYVDGR----PHSVDTVVLSTQHAPDITQAQIREAVIEEIIKPVLPPEMLKD-TKYLVNPTGRFVIGGPQGDCGLTGRKIIVDTYGGASPHGGGAFSGKDPSKVDRSAAYAARYVAKNVVAAGLARQC 297          
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_HAMD5 (S-adenosylmethionine synthetase OS=Hamiltonella defensa subsp. Acyrthosiphon pisum (strain 5AT) GN=metK PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 5.459e-46
Identity = 91/169 (53.85%), Postives = 118/169 (69.82%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRC 509
            T  LMP     + +L  + +E+RK G  PWLRPD K+Q+T +Y  + G    V + T++ STQH+E VT  ++   + + +IKPVIP ++L   T + +NP+GRFVIGGP GD GLTGRKII+DTYGG   HGGGAFSGKDP+KVDRS AY  R  AK+IVA+GLA RC
Sbjct:  131 TDVLMPAPITYSHRLVKRQSEMRKIGQLPWLRPDAKSQITFKY--DKG--YAVAIDTIVFSTQHEEDVTQKQLEEAVMEEIIKPVIPTQWLSSSTKYFINPTGRFVIGGPMGDCGLTGRKIIVDTYGGMARHGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADRC 295          
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_EDWI9 (S-adenosylmethionine synthetase OS=Edwardsiella ictaluri (strain 93-146) GN=metK PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 5.459e-46
Identity = 91/169 (53.85%), Postives = 119/169 (70.41%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRC 509
            T  LMP     A +L  +   VRKNGT PWLRPD K+QVT +Y  ++G +  +    V++STQH +T++  ++   + + +IKPV+P ++L   T + +NP+GRFVIGGP GD GLTGRKII+DTYGG   HGGGAFSGKDP+KVDRS AY  R  AK+IVA+GLA RC
Sbjct:  131 TDVLMPAPITYAHRLMERQARVRKNGTLPWLRPDAKSQVTFQY--DDGKIAGI--DAVVLSTQHADTISQKDLQEAVMEEIIKPVLPAEWLSASTKYFINPTGRFVIGGPMGDCGLTGRKIIVDTYGGAARHGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADRC 295          
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_DESAD (S-adenosylmethionine synthetase OS=Desulfovibrio salexigens (strain ATCC 14822 / DSM 2638 / NCIB 8403 / VKM B-1763) GN=metK PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 5.459e-46
Identity = 94/168 (55.95%), Postives = 117/168 (69.64%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARR 506
            T  LMP     A KL  KLTEVRK+ T  +LRPDGKT+V  EY +      PVR+  V+I+ QHD+ +   +I  D+K+ V+   +P + +DD T  ++N +GRFVIGGP GD GLTGRKII DTYGG   HGGGAFSGKDP+KVDRSGAY+ R  AK+IVA+GLA R
Sbjct:  135 TEALMPAPIYYAHKLSRKLTEVRKDATLDYLRPDGKTEVAFEYLDGK----PVRIADVVIAAQHDDGIEQGQIYEDIKREVVLASLPAEMIDDATKIYINTTGRFVIGGPMGDCGLTGRKIINDTYGGMGNHGGGAFSGKDPSKVDRSGAYMARYIAKNIVAAGLAER 298          
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_COLP3 (S-adenosylmethionine synthetase OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=metK PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 5.459e-46
Identity = 89/169 (52.66%), Postives = 118/169 (69.82%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRC 509
            TP LMP     + +L  +  E RK+G  PWLRPD K+QVT  Y +      PV + TV++STQH+  +  +++ + + +++I  V+P + L + T +H+NP+GRFVIGGP GD GLTGRKII+DTYGG   HGGGAFSGKDP+KVDRS AY  R  AK+IVA+GLA RC
Sbjct:  131 TPTLMPAPLYYSHRLVERQAEARKSGVLPWLRPDAKSQVTFIYEDNK----PVAIDTVVLSTQHNPDIKQEDLVSAVMENIINHVLPAELLTEDTKYHINPTGRFVIGGPVGDCGLTGRKIIVDTYGGMARHGGGAFSGKDPSKVDRSAAYAGRYVAKNIVAAGLADRC 295          
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_BORPE (S-adenosylmethionine synthetase OS=Bordetella pertussis GN=metK PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 5.459e-46
Identity = 91/169 (53.85%), Postives = 116/169 (68.64%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRC 509
            TP+LMP     A +L  + +E+RK+G  PWLRPD K+QVT  Y +      P  V TV++STQH   ++   I   + + +IKP  P+  +  KT F +NP+GRFVIGGP GD GLTGRKII+DTYGG   HGGGAFSGKDP+KVDRS AY  R  AK++VA+GLAR+C
Sbjct:  135 TPDLMPAPIWYAHRLVQRQSELRKDGRLPWLRPDAKSQVTFRYVDGR----PAEVDTVVLSTQHSPEISQASIREAVIEDIIKPSFPEGLITPKTKFLVNPTGRFVIGGPQGDCGLTGRKIIVDTYGGACPHGGGAFSGKDPSKVDRSAAYAARYVAKNVVAAGLARQC 299          
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_BORPA (S-adenosylmethionine synthetase OS=Bordetella parapertussis GN=metK PE=3 SV=2)

HSP 1 Score: 183.341 bits (464), Expect = 5.459e-46
Identity = 91/169 (53.85%), Postives = 116/169 (68.64%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRC 509
            TP+LMP     A +L  + +E+RK+G  PWLRPD K+QVT  Y +      P  V TV++STQH   ++   I   + + +IKP  P+  +  KT F +NP+GRFVIGGP GD GLTGRKII+DTYGG   HGGGAFSGKDP+KVDRS AY  R  AK++VA+GLAR+C
Sbjct:  135 TPDLMPAPIWYAHRLVQRQSELRKDGRLPWLRPDAKSQVTFRYVDGR----PAEVDTVVLSTQHSPEISQASIREAVIEDIIKPSFPEGLITPKTKFLVNPTGRFVIGGPQGDCGLTGRKIIVDTYGGACPHGGGAFSGKDPSKVDRSAAYAARYVAKNVVAAGLARQC 299          
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_BORBR (S-adenosylmethionine synthetase OS=Bordetella bronchiseptica GN=metK PE=3 SV=2)

HSP 1 Score: 183.341 bits (464), Expect = 5.459e-46
Identity = 91/169 (53.85%), Postives = 116/169 (68.64%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRC 509
            TP+LMP     A +L  + +E+RK+G  PWLRPD K+QVT  Y +      P  V TV++STQH   ++   I   + + +IKP  P+  +  KT F +NP+GRFVIGGP GD GLTGRKII+DTYGG   HGGGAFSGKDP+KVDRS AY  R  AK++VA+GLAR+C
Sbjct:  135 TPDLMPAPIWYAHRLVQRQSELRKDGRLPWLRPDAKSQVTFRYVDGR----PAEVDTVVLSTQHSPEISQASIREAVIEDIIKPSFPEGLITPKTKFLVNPTGRFVIGGPQGDCGLTGRKIIVDTYGGACPHGGGAFSGKDPSKVDRSAAYAARYVAKNVVAAGLARQC 299          
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_YERPY (S-adenosylmethionine synthetase OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=metK PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 7.129e-46
Identity = 91/169 (53.85%), Postives = 118/169 (69.82%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRC 509
            T  LMP     A +L  +  EVRKNG  PWLRPD K+QVT +Y  ++G +V +    V++STQH E +   ++   + + +IKPV+P +++   T + +NP+GRFVIGGP GD GLTGRKII+DTYGG   HGGGAFSGKDP+KVDRS AY  R  AK+IVA+GLA RC
Sbjct:  131 TSVLMPAPITYAHRLVERQAEVRKNGALPWLRPDAKSQVTFQY--DDGKIVGI--DAVVLSTQHSEDINQKDLHEAVMEEIIKPVLPAEWITAHTKYFINPTGRFVIGGPMGDCGLTGRKIIVDTYGGMARHGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADRC 295          
The following BLAST results are available for this feature:
BLAST of FC930974 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_SYNS35.459e-4655.31S-adenosylmethionine synthetase OS=Synechococcus s... [more]
METK_RALEJ5.459e-4654.44S-adenosylmethionine synthetase OS=Ralstonia eutro... [more]
METK_HAMD55.459e-4653.85S-adenosylmethionine synthetase OS=Hamiltonella de... [more]
METK_EDWI95.459e-4653.85S-adenosylmethionine synthetase OS=Edwardsiella ic... [more]
METK_DESAD5.459e-4655.95S-adenosylmethionine synthetase OS=Desulfovibrio s... [more]
METK_COLP35.459e-4652.66S-adenosylmethionine synthetase OS=Colwellia psych... [more]
METK_BORPE5.459e-4653.85S-adenosylmethionine synthetase OS=Bordetella pert... [more]
METK_BORPA5.459e-4653.85S-adenosylmethionine synthetase OS=Bordetella para... [more]
METK_BORBR5.459e-4653.85S-adenosylmethionine synthetase OS=Bordetella bron... [more]
METK_YERPY7.129e-4653.85S-adenosylmethionine synthetase OS=Yersinia pseudo... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34100A09EF PostHarvP1 Citrus clementina cDNA clone C34100A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930974 ID=FC930974; Name=FC930974; organism=Citrus clementina; type=EST; length=513bp
GGACTCCTGAGTTGATGCCTTTGAGTCATGTGCTTGCAACAAAGCTTGGT
GCTAAGCTTACAGAAGTGAGGAAGAATGGGACCTGTCCGTGGCTGAGGCC
AGATGGCAAAACACAAGTCACTGTTGAGTATTACAATGAGAATGGCGCCA
TGGTTCCTGTTCGTGTCCATACTGTGCTCATCTCAACTCAGCACGATGAG
ACTGTAACTAATGATGAGATTGCTGCAGATCTCAAGCAACATGTGATCAA
GCCTGTGATTCCTGACAAGTACTTGGATGACAAAACTATTTTCCATCTTA
ACCCATCTGGCCGTTTTGTGATTGGTGGCCCTCACGGTGATGCTGGGCTC
ACCGGCCGGAAGATTATTATTGATACTTATGGTGGCTGGNGGGCACACGG
TGGTGGGGCTTTCTCAGGGAAAGATCCTACCAAGGTTGATAGAAGCGGTG
CTTACATTGTAAGGCAAGCTGCTAAGAGTATTGTGGCAAGCGGGCTTGCC
AGGAGATGCATTG
back to top