FC930974

Overview
NameFC930974
Unique NameFC930974
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length513
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15265 contig Ccv1_Contig15265:599..1111. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_ERYLH (S-adenosylmethionine synthetase OS=Erythrobacter litoralis (strain HTCC2594) GN=metK PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 2.709e-45
Identity = 95/172 (55.23%), Postives = 118/172 (68.60%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHV---IKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRC 509
            TP+LMP     + K+  +L   RKNG  P+L PD K+QVT+ Y  ENG   PV    V++STQH       E  A+L+ +V   +  ++PD +L D T +H+NP+G FVIGGP GDAGLTGRKII+DTYGG   HGGGAFSGKDPTKVDRS AYI R  AK++VA+GLA RC
Sbjct:  142 TPDLMPAPIDYSHKILHRLATDRKNGNAPFLEPDSKSQVTLRY--ENGK--PVACTAVVVSTQHGAGYDEGEKEAELRAYVKRVVADILPDGFLSDATKWHINPTGTFVIGGPDGDAGLTGRKIIVDTYGGAAPHGGGAFSGKDPTKVDRSAAYITRYLAKNVVAAGLATRC 309          
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_CYAP7 (S-adenosylmethionine synthetase OS=Cyanothece sp. (strain PCC 7424) GN=metK PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 2.709e-45
Identity = 101/179 (56.42%), Postives = 124/179 (69.27%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETV----TNDEIAADLK----QHVIKPVIPDKYL--DDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRC 509
            TPELMP+   LA ++  +L  VRK G  P+LRPDGKTQV+V Y  E+G   PV + T+LISTQH ET+     N  I   +K    Q V+ P   D  +  D+ T F +NP+G+FVIGGP GD+GLTGRKII+DTYGG+  HGGGAFSGKDPTKVDRS AY  R  AK+IVA+GLA +C
Sbjct:  142 TPELMPMPISLAHRIARRLAAVRKTGELPYLRPDGKTQVSVIY--EDGK--PVGIDTILISTQHTETLGQITDNAAIQKTIKDALWQAVVTPSFGDIEIKPDNNTKFLVNPTGKFVIGGPQGDSGLTGRKIIVDTYGGYSRHGGGAFSGKDPTKVDRSAAYACRHVAKNIVAAGLADKC 316          
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_XANCB (S-adenosylmethionine synthetase OS=Xanthomonas campestris pv. campestris (strain B100) GN=metK PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 3.538e-45
Identity = 90/171 (52.63%), Postives = 119/171 (69.59%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRK--NGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRC 509
            T   MP +  L+ +L  +  ++RK  N    WLRPD K+QVT+ Y  E+G  V   +  V++STQHD  V   ++   +++ ++KPV+P K+L   T FH+NP+G+FVIGGP GD GLTGRKII+DTYGGW  HGGGAFSGKDP+KVDRS AY  R  AK++VA+GLA RC
Sbjct:  131 TDSYMPAAIHLSHRLVEQQAKIRKKKNSALSWLRPDAKSQVTLRY--EDG--VATAIDAVVLSTQHDPGVKQKDLIEAVREEILKPVLPAKWLHKGTKFHINPTGKFVIGGPVGDCGLTGRKIIVDTYGGWARHGGGAFSGKDPSKVDRSAAYAARYVAKNVVAAGLADRC 297          
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_XANC8 (S-adenosylmethionine synthetase OS=Xanthomonas campestris pv. campestris (strain 8004) GN=metK PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 3.538e-45
Identity = 90/171 (52.63%), Postives = 119/171 (69.59%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRK--NGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRC 509
            T   MP +  L+ +L  +  ++RK  N    WLRPD K+QVT+ Y  E+G  V   +  V++STQHD  V   ++   +++ ++KPV+P K+L   T FH+NP+G+FVIGGP GD GLTGRKII+DTYGGW  HGGGAFSGKDP+KVDRS AY  R  AK++VA+GLA RC
Sbjct:  131 TDSYMPAAIHLSHRLVEQQAKIRKKKNSALSWLRPDAKSQVTLRY--EDG--VATAIDAVVLSTQHDPGVKQKDLIEAVREEILKPVLPAKWLHKGTKFHINPTGKFVIGGPVGDCGLTGRKIIVDTYGGWARHGGGAFSGKDPSKVDRSAAYAARYVAKNVVAAGLADRC 297          
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_TRIEI (S-adenosylmethionine synthetase OS=Trichodesmium erythraeum (strain IMS101) GN=metK PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 3.538e-45
Identity = 98/179 (54.75%), Postives = 124/179 (69.27%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETV--------TNDEIAADLKQHVIKPVIPDKYL--DDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRC 509
            TPELMPL   LA ++  +LT VRK G  P+LRPDGK+QVT+ Y  E+G   PV + T+LISTQH   +           +I  DL ++V++P+  D  +  + +T F +NP+G+FVIGGP GD GLTGRKIIIDTYGG+  HGGGAFSGKDPTKVDRS AY  R  AK+IVA+ LA +C
Sbjct:  142 TPELMPLPISLAHRVCRQLTAVRKTGQLPYLRPDGKSQVTITY--EDGR--PVGIDTILISTQHTAKIGEITELSDIQAKIKEDLWKYVVEPIFKDAEIKPNSQTRFLVNPTGKFVIGGPQGDCGLTGRKIIIDTYGGYSRHGGGAFSGKDPTKVDRSAAYACRYIAKNIVAADLAEKC 316          
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_SHEON (S-adenosylmethionine synthetase OS=Shewanella oneidensis GN=metK PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 3.538e-45
Identity = 90/169 (53.25%), Postives = 115/169 (68.05%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRC 509
            T  LMP     A  L  + +EVRKNGT PWLRPD K+QVT  Y +       V +  +++STQH   +   ++   + + +IKPV+P ++L+  T + +NP+GRFVIGGP GD GLTGRKII+DTYGG   HGGGAFSGKDP+KVDRS AY  R  AK+IVA+GLA RC
Sbjct:  131 TDILMPAPITYAHALVKRQSEVRKNGTLPWLRPDAKSQVTFAYEDNK----IVGIDAIVLSTQHSPDIAQADLIEGVMETIIKPVLPAQWLNKDTKYFINPTGRFVIGGPMGDCGLTGRKIIVDTYGGMARHGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADRC 295          
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_SHEHH (S-adenosylmethionine synthetase OS=Shewanella halifaxensis (strain HAW-EB4) GN=metK PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 3.538e-45
Identity = 91/169 (53.85%), Postives = 119/169 (70.41%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRC 509
            T  LMP     +  L  + +EVRK+ T PWLRPD K+QVT  Y N +G++  +    V++STQH ++V+  ++   + + +IKPV+P K+L   T + +NP+GRFVIGGP GD GLTGRKII+DTYGG   HGGGAFSGKDP+KVDRS AY  R  AK+IVA+GLA RC
Sbjct:  131 TDSLMPAPITYSHMLVKRQSEVRKDKTLPWLRPDAKSQVTFAY-NPDGSIAGI--DAVVLSTQHCDSVSQSDLIEGVMETIIKPVLPAKWLSKDTKYFINPTGRFVIGGPVGDCGLTGRKIIVDTYGGMARHGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADRC 296          
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_SHEAM (S-adenosylmethionine synthetase OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=metK PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 3.538e-45
Identity = 91/169 (53.85%), Postives = 119/169 (70.41%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRC 509
            T  LMP     A  L  + +EVRK+GT  WLRPD K+QVT  Y  + G +V +    +++STQH ++V+  ++   + + +IKPV+P ++L+  T F +NP+GRFVIGGP GD GLTGRKII+DTYGG   HGGGAFSGKDP+KVDRS AY  R  AK+IVA+GLA RC
Sbjct:  131 TDVLMPAPITYAHALVKRQSEVRKDGTLSWLRPDAKSQVTFAY--DEGKIVGI--DAIVLSTQHCDSVSQSDLVEGVMETIIKPVVPAQWLNKDTKFFINPTGRFVIGGPMGDCGLTGRKIIVDTYGGMARHGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADRC 295          
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_PSYIN (S-adenosylmethionine synthetase OS=Psychromonas ingrahamii (strain 37) GN=metK PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 3.538e-45
Identity = 90/169 (53.25%), Postives = 118/169 (69.82%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRC 509
            T   MP     A  L  +  +VRKN T PWLRPD K+QVT  Y  ++G +V +    V++STQH E +  +++   + + +IKPV+P ++L ++T + +NP+GRFVIGGP GD GLTGRKII+DTYGG   HGGGAFSGKDP+KVDRS AY  R  AK+IVA+GLA RC
Sbjct:  131 TDVFMPAPITYAHHLVKRQAKVRKNKTLPWLRPDAKSQVTFAY--DHGKIVGI--DAVVLSTQHSEDIKQEDLVEAVMEEIIKPVLPAEWLSERTKYFINPTGRFVIGGPVGDCGLTGRKIIVDTYGGSARHGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADRC 295          
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_PSYA2 (S-adenosylmethionine synthetase OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=metK PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 3.538e-45
Identity = 88/169 (52.07%), Postives = 118/169 (69.82%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRC 509
            T  LMP     A +L  + +E+R+ G  PWLRPD K Q+T++Y        PV +  V++STQHD +++  ++   + + +IK V+P + L   T +H+NP+G+FVIGGP GDAGLTGRKII+DTYGG   HGGGAFSGKDP+KVDRS AY VR  AK+IVA+G+A RC
Sbjct:  132 TEVLMPAPIEYAHRLMERQSELRRAGELPWLRPDAKAQITLKYDGSK----PVAIDAVVLSTQHDPSISQADLQEAIMESIIKQVLPAELLHAGTRYHINPTGKFVIGGPVGDAGLTGRKIIVDTYGGMARHGGGAFSGKDPSKVDRSAAYAVRYVAKNIVAAGIADRC 296          
The following BLAST results are available for this feature:
BLAST of FC930974 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_ERYLH2.709e-4555.23S-adenosylmethionine synthetase OS=Erythrobacter l... [more]
METK_CYAP72.709e-4556.42S-adenosylmethionine synthetase OS=Cyanothece sp. ... [more]
METK_XANCB3.538e-4552.63S-adenosylmethionine synthetase OS=Xanthomonas cam... [more]
METK_XANC83.538e-4552.63S-adenosylmethionine synthetase OS=Xanthomonas cam... [more]
METK_TRIEI3.538e-4554.75S-adenosylmethionine synthetase OS=Trichodesmium e... [more]
METK_SHEON3.538e-4553.25S-adenosylmethionine synthetase OS=Shewanella onei... [more]
METK_SHEHH3.538e-4553.85S-adenosylmethionine synthetase OS=Shewanella hali... [more]
METK_SHEAM3.538e-4553.85S-adenosylmethionine synthetase OS=Shewanella amaz... [more]
METK_PSYIN3.538e-4553.25S-adenosylmethionine synthetase OS=Psychromonas in... [more]
METK_PSYA23.538e-4552.07S-adenosylmethionine synthetase OS=Psychrobacter a... [more]

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Properties
Property NameValue
Genbank descriptionC34100A09EF PostHarvP1 Citrus clementina cDNA clone C34100A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930974 ID=FC930974; Name=FC930974; organism=Citrus clementina; type=EST; length=513bp
GGACTCCTGAGTTGATGCCTTTGAGTCATGTGCTTGCAACAAAGCTTGGT
GCTAAGCTTACAGAAGTGAGGAAGAATGGGACCTGTCCGTGGCTGAGGCC
AGATGGCAAAACACAAGTCACTGTTGAGTATTACAATGAGAATGGCGCCA
TGGTTCCTGTTCGTGTCCATACTGTGCTCATCTCAACTCAGCACGATGAG
ACTGTAACTAATGATGAGATTGCTGCAGATCTCAAGCAACATGTGATCAA
GCCTGTGATTCCTGACAAGTACTTGGATGACAAAACTATTTTCCATCTTA
ACCCATCTGGCCGTTTTGTGATTGGTGGCCCTCACGGTGATGCTGGGCTC
ACCGGCCGGAAGATTATTATTGATACTTATGGTGGCTGGNGGGCACACGG
TGGTGGGGCTTTCTCAGGGAAAGATCCTACCAAGGTTGATAGAAGCGGTG
CTTACATTGTAAGGCAAGCTGCTAAGAGTATTGTGGCAAGCGGGCTTGCC
AGGAGATGCATTG
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