FC930977

Overview
NameFC930977
Unique NameFC930977
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length675
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10240 contig Ccv1_Contig10240:1..673. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC930977 vs. ExPASy Swiss-Prot
Match: AROF_STRCO (Phospho-2-dehydro-3-deoxyheptonate aldolase OS=Streptomyces coelicolor GN=aroH PE=1 SV=3)

HSP 1 Score: 117.087 bits (292), Expect = 8.676e-26
Identity = 55/113 (48.67%), Postives = 76/113 (67.26%), Query Frame = 1 
Query:  334 DSWKSKKALQLPEYPNKEELESVLKTLDDFPPIVFAGXXXXXXXXXXXXXMGKAFLLQGGDCAESFKEFNANNIRDTFRILLQMGVVLMFGGQMPVVKVGRMAGQFAKPRSDP 672
            ++W+   A Q PEYP+ E L +V+  L+ +PP+VFAG              G+AFLLQGGDCAE+F   +A++IR+  + LLQMG VL +   +PVVKVGR+AGQ++KPRS P
Sbjct:   13 NTWRDLPAAQQPEYPDTEALRAVIADLESYPPLVFAGECDQLRARMAAVAKGEAFLLQGGDCAEAFDAVSADHIRNKLKTLLQMGAVLTYAASVPVVKVGRIAGQYSKPRSKP 125
[Close]
BLAST of FC930977 vs. ExPASy Swiss-Prot
Match: AROF_NEUCR (Phospho-2-dehydro-3-deoxyheptonate aldolase OS=Neurospora crassa GN=aro-8 PE=1 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 9.592e-25
Identity = 56/116 (48.28%), Postives = 67/116 (57.76%), Query Frame = 1 
Query:  325 WTVDSWKSKKALQLPEYPNKEELESVLKTLDDFPPIVFAGXXXXXXXXXXXXXMGKAFLLQGGDCAESFKEFNANNIRDTFRILLQMGVVLMFGGQMPVVKVGRMAGQFAKPRSDP 672
            W  DSW+SK   Q PEYP+K  LE     L   PPIV                 GKAFLLQGGDCAE F     + I    ++LLQM +VL++G   PVV++GRMAGQ+AKPRS P
Sbjct:   12 WAPDSWRSKPIKQCPEYPDKAALEKATNELKTLPPIVLPNEIIRLREHLRDVAQGKAFLLQGGDCAELFSYCQQDVIESKIKLLLQMSLVLLWGADKPVVRIGRMAGQYAKPRSSP 127
The following BLAST results are available for this feature:
BLAST of FC930977 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
AROF_STRCO8.676e-2648.67Phospho-2-dehydro-3-deoxyheptonate aldolase OS=Str... [more]
AROF_NEUCR9.592e-2548.28Phospho-2-dehydro-3-deoxyheptonate aldolase OS=Neu... [more]

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Properties
Property NameValue
Genbank descriptionC34100A12EF PostHarvP1 Citrus clementina cDNA clone C34100A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930977 ID=FC930977; Name=FC930977; organism=Citrus clementina; type=EST; length=675bp
CTTCAGGTTCCTCTTTCACGATAAAGAGTTAAAGAGCCTCCGTTTATTTG
AAAAAAAAAAGGGAAAAAAGAAATTCGTTTCATTTACATTTCAACAAAAA
TAAATTAGAACATTATGGCTCTCGTTGGCAGTACTTCAATTACTCCCACA
AAATCATCCTTCGTTCAGCCACAATCTCAGCCGTTCATCACCAAACCCAG
ATCAAATATCCATCCCATCTCCGCCGTCCATGCTGCTGACTCTGCCAAGC
CACCGTCTGCCGTAAAAACCACAACAAAGGCACCCGAGCCAGTCCTCAAG
ACCAGCAATGTGGGTCCCCAAAAATGGACGGTTGACAGCTGGAAATCCAA
GAAGGCTTTGCAGCTGCCGGAGTATCCAAACAAAGAGGAGCTCGAGTCCG
TGCTGAAAACGCTCGACGATTTCCCGCCGATTGTGTTCGCCGGTGAAGCC
AGGAGCTTGGAGGAGCGGCTAGCTGAAGCCGCCATGGGCAAAGCTTTCTT
GCTTCAAGGCGGTGATTGCGCTGAGAGTTTCAAAGAGTTTAATGCTAATA
ACATTCGTGACACTTTCAGAATCCTTCTCCAGATGGGTGTTGTGCTAATG
TTCGGCGGTCAAATGCCCGTTGTTAAGGTGGGAAGAATGGCAGGGCAGTT
TGCGAAGCCGAGATCAGATCCGTTT
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