FC930978

Overview
NameFC930978
Unique NameFC930978
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length723
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12716 contig Ccv1_Contig12716:127..849. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930978 vs. ExPASy Swiss-Prot
Match: ALAM_YEAST (Probable alanine aminotransferase, mitochondrial OS=Saccharomyces cerevisiae GN=ALT1 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.719e-15
Identity = 51/149 (34.23%), Postives = 78/149 (52.35%), Query Frame = 3
Query:  300 YSPTFGVPSARRGIADYLNRDLPYKLS-PEDVYLTLGCSQAIEISLSVLAR-PGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPGKCWEVDLDGVEALADE------NTVAIVIINPGDPCGNVFSYQHLQKIARTARNLGDIVIA 722
            YS + GV   R+ +A+++ +    ++S PED++LT G S A+   LS+  R P   +LIP P YPLY   A  + NN +A  Y L     W  + + +E +  E          +V+INPG+P G V S + + +I   A   G +VIA
Sbjct:  221 YSSSQGVEGIRKSVAEFITKRDEGEISYPEDIFLTAGASAAVNYLLSIFCRGPETGVLIPIPQYPLYT--ATLALNNSQALPYYLDENSGWSTNPEEIETVVKEAIQNEIKPTVLVVINPGNPTGAVLSPESIAQIFEVAAKYGTVVIA 367          
BLAST of FC930978 vs. ExPASy Swiss-Prot
Match: Y286_HAEIN (Uncharacterized aminotransferase HI0286 OS=Haemophilus influenzae GN=HI0286 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.008e-14
Identity = 57/184 (30.98%), Postives = 90/184 (48.91%), Query Frame = 3
Query:  174 EKDKRPVIHLGHGDPSAFPCFRTSTVAEDAVVDALRTA-HYNCYSPTFGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPGKCWEVDLDGVEALADENTVAIVIINPGDPCGNVFSYQHLQKIARTARNLGDIVIA 722
            E++   ++ L  G+P+ F         ++ +VD LR       Y  + G+ SAR+ I  Y         +  DVY+  G S+ I +++  L   G  +L+P P YPL+   AA + +  +A HY       W   +D ++A  +  T AIVIINP +P G V+S + LQ+I   AR    I+ A
Sbjct:   29 EEEGNKILKLNIGNPAPFGF----EAPDEILVDVLRNLPSAQGYCDSKGLYSARKAIVQYYQSKGILGATVNDVYIGNGVSELITMAMQALLNDGDEVLVPMPDYPLWT--AAVTLSGGKAVHYLCDEDANWFPTIDDIKAKVNAKTKAIVIINPNNPTGAVYSKELLQEIVEIARQNNLIIFA 206          
BLAST of FC930978 vs. ExPASy Swiss-Prot
Match: ALAT_YEAST (Probable alanine aminotransferase OS=Saccharomyces cerevisiae GN=ALT2 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.115e-13
Identity = 60/205 (29.27%), Postives = 97/205 (47.32%), Query Frame = 3
Query:  147 LTSLKENLNEKDKRPVIHLGHGDPSAFPCFRTSTVAEDAVVDALRTAH-----YNCYSPTFGVPSARRGIADYLNR-DLPYKLSPEDVYLTLGCSQAIEISLSVLARPG-ANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPGKCWEVDLDGVEALADE------NTVAIVIINPGDPCGNVFSYQHLQKIARTARNLGDIVIA 722
            LT  ++ L   +   ++ +GH + ++   F     + DA+  A R  +        YS + GVP  R+ +AD++ R D     +PED+YLT G S A    LS+L +     +LIP P YPLY   A+ S  N +   Y L     W  + D +E +  +          +++INPG+P G V S + + +I   A   G  +I+
Sbjct:   85 LTFTRQVLAILEYPEILRVGHNELASLNLF-----SRDALERAERLLNDIGGSIGAYSHSQGVPGIRQTVADFITRRDGGEPATPEDIYLTTGASSAATSLLSLLCKDSQTGLLIPIPQYPLYT--ASASLFNAQVLPYYLDEESNWSTNSDEIEKVVQDALKKQIRPSVLIVINPGNPTGAVLSEETIARICLIAAKYGITIIS 282          
BLAST of FC930978 vs. ExPASy Swiss-Prot
Match: YUGH_BACSU (Putative aminotransferase yugH OS=Bacillus subtilis GN=yugH PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.901e-13
Identity = 55/180 (30.56%), Postives = 90/180 (50.00%), Query Frame = 3
Query:  192 VIHLGHGDPSAFPCFRTSTVAEDAVVDALRTAHYNCYSPTFGVPSARRGIADYLNRDLPYKLSPE-DVYLTLGCSQAIEISLSVLARPGANILIPRPGYPLYE--IHAAGSNNNLEARHYDLLPGKCWEVDLDGVEALADENTVAIVIINPGDPCGNVFSYQHLQKIARTARNLGDIVIA 722
            VI LG G+P     F T+    +A + +L    Y  Y+   G+ S R  I+ YL+       SP+ ++ +T+G SQA++I++  +  PG  ++IP P +  Y+  +  AG        H      K ++      EA   E T AI+I +P +P G+V+S + L +IA  A+    IV+A
Sbjct:   30 VISLGVGEPD----FVTAWNVREASILSLEQG-YTSYTANAGLYSLREEISRYLSNRFDLSYSPDNELIVTVGASQALDIAIRAIVNPGEEVIIPEPCFVAYDALVSLAGG----IPVHVHTTADKGFKATAADFEAAVTEKTKAILICSPSNPTGSVYSKEELNEIAEFAKKHDVIVLA 200          
BLAST of FC930978 vs. ExPASy Swiss-Prot
Match: AAT_STRVG (Aspartate aminotransferase OS=Streptomyces virginiae GN=aspC PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.609e-12
Identity = 51/178 (28.65%), Postives = 83/178 (46.63%), Query Frame = 3
Query:  186 RPVIHLGHGDPSAFPCFRTSTVAEDAVVDALRTAHYNCYSPTFGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRPGYPLY--EIHAAGSNNNLEARHYDLLPGKC--WEVDLDGVEALADENTVAIVIINPGDPCGNVFSYQHLQKIARTARNLG 707
            RPVI  G G+P     F T     +A V+A R   Y+ Y+P  G+P  +  IA    RD  Y++    V +T G  QAI  + + +  PG  +++P P +  Y   I  AG          D++  +   + V ++ +EA   E T  ++ ++P +P G+V+S    + I   A   G
Sbjct:   28 RPVIGFGAGEPD----FPTPDYIVEAAVEACRNPKYHRYTPAGGLPELKAAIAAKTLRDSGYEVEASQVLVTNGGKQAIYEAFAAILDPGDEVIVPAPYWTTYPESIRLAG------GVPVDVVADETTGYRVSVEQLEAARTERTKVVLFVSPSNPTGSVYSEADAKAIGEWAAEHG 195          
BLAST of FC930978 vs. ExPASy Swiss-Prot
Match: AAT_MYCTU (Probable aspartate aminotransferase OS=Mycobacterium tuberculosis GN=aspC PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.745e-12
Identity = 57/182 (31.32%), Postives = 88/182 (48.35%), Query Frame = 3
Query:  174 EKDKRPVIHLGHGDPSAFPCFRTSTVAEDAVVDALRTAHYNCYSPTFGVPSARRGIADYLNRDLPYKLSP-------EDVYLTLGCSQAIEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPGKCWEVDLDGVEALADENTVAIVIINPGDPCGNVFSYQHLQKIARTAR 698
            E +   ++ L  G+P+ F       +  D ++ AL  A    YS + G+ SARR +         Y+L P       +DVYL  G S+ I ++L  L   G  +LIP P YPL+   A+ S       HY     + W+ D+  +E+   E T A+V+INP +P G V+S + L ++   AR
Sbjct:   53 EAEGHRILKLNIGNPAPFGFEAPDVIMRD-IIQALPYAQG--YSDSQGILSARRAVVTR------YELVPGFPRFDVDDVYLGNGVSELITMTLQALLDNGDQVLIPSPDYPLWT--ASTSLAGGTPVHYLCDETQGWQPDIADLESKITERTKALVVINPNNPTGAVYSCEILTQMVDLAR 223          
BLAST of FC930978 vs. ExPASy Swiss-Prot
Match: AAT_MYCBO (Probable aspartate aminotransferase OS=Mycobacterium bovis GN=aspC PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.745e-12
Identity = 57/182 (31.32%), Postives = 88/182 (48.35%), Query Frame = 3
Query:  174 EKDKRPVIHLGHGDPSAFPCFRTSTVAEDAVVDALRTAHYNCYSPTFGVPSARRGIADYLNRDLPYKLSP-------EDVYLTLGCSQAIEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPGKCWEVDLDGVEALADENTVAIVIINPGDPCGNVFSYQHLQKIARTAR 698
            E +   ++ L  G+P+ F       +  D ++ AL  A    YS + G+ SARR +         Y+L P       +DVYL  G S+ I ++L  L   G  +LIP P YPL+   A+ S       HY     + W+ D+  +E+   E T A+V+INP +P G V+S + L ++   AR
Sbjct:   53 EAEGHRILKLNIGNPAPFGFEAPDVIMRD-IIQALPYAQG--YSDSQGILSARRAVVTR------YELVPGFPRFDVDDVYLGNGVSELITMTLQALLDNGDQVLIPSPDYPLWT--ASTSLAGGTPVHYLCDETQGWQPDIADLESKITERTKALVVINPNNPTGAVYSCEILTQMVDLAR 223          
The following BLAST results are available for this feature:
BLAST of FC930978 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
ALAM_YEAST7.719e-1534.23Probable alanine aminotransferase, mitochondrial O... [more]
Y286_HAEIN1.008e-1430.98Uncharacterized aminotransferase HI0286 OS=Haemoph... [more]
ALAT_YEAST1.115e-1329.27Probable alanine aminotransferase OS=Saccharomyces... [more]
YUGH_BACSU1.901e-1330.56Putative aminotransferase yugH OS=Bacillus subtili... [more]
AAT_STRVG1.609e-1228.65Aspartate aminotransferase OS=Streptomyces virgini... [more]
AAT_MYCTU2.745e-1231.32Probable aspartate aminotransferase OS=Mycobacteri... [more]
AAT_MYCBO2.745e-1231.32Probable aspartate aminotransferase OS=Mycobacteri... [more]

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Properties
Property NameValue
Genbank descriptionC34100B01EF PostHarvP1 Citrus clementina cDNA clone C34100B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930978 ID=FC930978; Name=FC930978; organism=Citrus clementina; type=EST; length=723bp
GGCTTCTTGGCTCATGCCGCTCAAAAATCATGGAAAACGAGTCTCTCCTT
CATCAGAAATTGAGTCTTTTTGGTGTTAACCCGAAAAAAGAGGAGCGCCA
CAACGACAACAAGACCACTTCTTCAGCCGTTACCATTCGAGGAGTCCTCA
CTTCCTTAAAAGAGAATCTGAACGAAAAGGACAAGAGACCCGTCATTCAC
CTTGGCCACGGCGACCCCTCGGCGTTTCCTTGCTTTCGGACAAGCACCGT
AGCCGAAGATGCCGTCGTCGATGCTCTCCGGACTGCCCACTACAACTGCT
ATTCGCCCACCTTTGGTGTTCCTTCTGCTAGAAGGGGCATAGCTGATTAT
CTGAACCGTGACCTCCCATACAAGTTATCACCGGAAGATGTTTATCTCAC
ACTTGGATGTAGCCAAGCAATCGAAATATCATTATCGGTCCTCGCTCGTC
CTGGTGCCAATATTTTGATTCCAAGGCCCGGCTACCCTTTATATGAAATT
CATGCAGCAGGGAGTAACAACAACCTTGAAGCTCGCCATTATGATCTTCT
TCCTGGAAAGTGTTGGGAAGTGGATCTTGATGGAGTTGAAGCCCTTGCAG
ATGAGAATACAGTTGCCATTGTCATCATAAACCCTGGCGATCCATGCGGA
AATGTCTTCAGTTACCAACATCTGCAGAAAATTGCGCGGACAGCAAGAAA
TCTTGGGGATATTGTGATTGCTG
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