FC930984

Overview
NameFC930984
Unique NameFC930984
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length727
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930984 vs. ExPASy Swiss-Prot
Match: TCPZ_RABIT (T-complex protein 1 subunit zeta OS=Oryctolagus cuniculus GN=CCT6 PE=2 SV=3)

HSP 1 Score: 81.2629 bits (199), Expect = 6.004e-15
Identity = 62/252 (24.60%), Postives = 122/252 (48.41%), Query Frame = 1
Query:   16 QLAVDAVMRLKGST---NLESIQIIKKPGGSLKDSFLDEGFILDKKIGIGQP---KRIENAKILVANTAMDTDKVKIYGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINC---------FVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVM 726
            +  VD+++ +K      +L  ++I++    S  D+ L  G +LD   G   P   KR+E+A IL  N +++ +K ++  +     S  +  ++  AE++ + ++V+KI+                +N++ I  F  +  A  GI+A+  A    +ERL L  GG   ++ D+     LGH  L+ E  +GE+K          ++ T++++G + H L + + ++ D L  +   ++D  V+ G G  E+ M
Sbjct:  170 EAVVDSILAIKKQDEPIDLFMVEIMEMKHKSETDTSLIRGLVLDH--GARHPDMKKRVEDAYILTCNVSLEYEKTEV-NSGFFYKSAEEREKLVKAERKFIEDRVKKIVELKKKVCGDSDKGFVVINQKGIDPFSLDALAKEGIVALRRAKRRNMERLTLACGGVPLNSLDDLNPDCLGHAGLVYEYTLGEEKFTFIEKCNNPRSVTLLVKGPNKHTLTQIKDAIRDGLRAVKNAIDDGCVVPGAGAVEVAM 418          
BLAST of FC930984 vs. ExPASy Swiss-Prot
Match: TCPG_TETPY (T-complex protein 1 subunit gamma OS=Tetrahymena pyriformis PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.004e-15
Identity = 64/247 (25.91%), Postives = 119/247 (48.18%), Query Frame = 1
Query:   19 LAVDAVMRLKGSTNLESI--------QIIKKPGGSLKDSFLDEGFILDKKIGIGQPKR-IENAKILVANTAMDTDKVKIYGARVRVDSMSKAAEIEGAEKQKMREKV---QKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLGH-CKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEM 720
            LA+ AV  +    NL+ +        ++ K PGG+L+DS + +G + +K I   + +R I+N ++++ +  ++  K    G  +    M K  ++  A +Q+M E       I+ H  +  +  + + +  +       +  I         R++ V+G  I +  +  +   +G  C L E  +IG++     +  E  +AC+I+LRGAS  VL+E ER+LHD L V      + +++ GGG  EM
Sbjct:  177 LALKAVRTIMRGGNLQKLNLEIKRYAKVEKIPGGTLEDSVVLDGVMFNKDITHPKMRRFIKNPRVILLDCPLEYKK----GESMTNLEMMKETDMTDALQQEMEELALMCNDILKHKPDVVITEKGVSDLAQHYLLKQNVSVIRRVRKTDNNRISRVSGATIVNRPEEIQESDVGKKCGLFEVKLIGDEYFTFMTECENPEACSIILRGASKDVLNEMERNLHDCLAVAKNIFVNPKLVPGGGAIEM 419          
BLAST of FC930984 vs. ExPASy Swiss-Prot
Match: TCPZ_DICDI (T-complex protein 1 subunit zeta OS=Dictyostelium discoideum GN=cct6 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.024e-14
Identity = 50/191 (26.18%), Postives = 94/191 (49.21%), Query Frame = 1
Query:  160 PKRIENAKILVANTAMDTDKVKIYGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINC--------FVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGG 708
            PK++ N  IL  N +++ +K ++    +  D  +++  I+G  K    +  Q I      C         +N++ I     ++ A AGI+ +  A    +ERL L  GG   ++ ++     LGH  L+ E  +GE+K     GV+   +CT++++G + H +++ + +L D L  +  T+ D  V+ GGG
Sbjct:  224 PKKLTNCFILTCNVSLEYEKTEVNANFLYKDHETRSRMIDGEHKLVAAKCRQIIELKNHVCDTPDKNFVVINQKGIDPICLDMLAKAGIMGLRRAKRRNMERLTLACGGTAMNSLEDLTPDCLGHADLVYEQTLGEEKYTFVEGVKNPFSCTVLIKGPTKHQIEQIKDALRDGLRAVKNTIEDKCVVPGGG 414          
BLAST of FC930984 vs. ExPASy Swiss-Prot
Match: TCPZ_CHICK (T-complex protein 1 subunit zeta OS=Gallus gallus GN=CCT6 PE=1 SV=3)

HSP 1 Score: 80.4925 bits (197), Expect = 1.024e-14
Identity = 63/252 (25.00%), Postives = 122/252 (48.41%), Query Frame = 1
Query:   16 QLAVDAVMRLKGS---TNLESIQIIKKPGGSLKDSFLDEGFILDKKIGIGQP---KRIENAKILVANTAMDTDKVKIYGARVRVDSMSKAAEIEGAEKQKMREKVQKII---------AHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVM 726
            +  VD+V+ ++      +L  ++I++    S  D+ L  G +LD   G   P   KR+E+A IL  N +++ +K ++  A     S  +  ++  AE++ + ++V KII         +      +N++ I  F  +  A  GI+A+  A    +ERL L  GG   ++ ++     LGH  L+ E  +GE+K       +  ++ T+++RG + H L + + ++ D L  +   + D  V+ G G  E+ +
Sbjct:  169 EAVVDSVLAVRKPGEPIDLHMVEIMEMKHKSETDTTLIRGLVLDH--GARHPDMKKRVEDAYILTCNVSLEYEKTEV-SAGFFYKSAEEREKLVKAERKFIEDRVSKIIDLKRRVCGDSDKGFIVINQKGIDPFSLDALAKEGIVALRRAKRRNMERLTLACGGTAMNSVEDLTPDCLGHAGLVYEYTLGEEKYTFIEKCDNPRSVTLLIRGPNKHTLTQIKDAVRDGLRAVKNAIEDGCVIPGAGALEVAV 417          
BLAST of FC930984 vs. ExPASy Swiss-Prot
Match: TCPW_BOVIN (T-complex protein 1 subunit zeta-2 OS=Bos taurus GN=CCT6B PE=2 SV=3)

HSP 1 Score: 80.4925 bits (197), Expect = 1.024e-14
Identity = 66/247 (26.72%), Postives = 122/247 (49.39%), Query Frame = 1
Query:   22 AVDAVMRLKGSTNLESIQIIKKPGGSLKDSFLDEGFILDKKIGIGQP---KRIENAKILVANTAMDTDKVKIYGARVRVDSMSKAAEIEGAEKQKMREKVQKII-------AHGINCFV--NRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVM 726
            +V A+ R     +L  ++I++    S  D+ L +G +LD   G   P   KR+++A IL  N +++ +K ++        +  K   ++ AE++ + ++VQKII       A     FV  N++ I  F  +  A  GILA+  A    +ERL+L  GG   ++ ++     LGH  L+ E  +GE+K          ++ T++++G + H L + + ++ D L  +   + D  V+ G G  E+V+
Sbjct:  175 SVLAIRRPNYPIDLFMVEIMEMKHKSETDTKLIKGLVLDH--GARHPDMKKRVDDAFILTCNVSLEYEKTEVSSGFFYKTAEEKEKLVK-AERKFIEDRVQKIIDLKDKVCAQSNKGFVVINQKGIDPFSLDALAKHGILALRRAKRRNMERLSLACGGVAVNSVEDLSVDCLGHAGLVYEYTLGEEKYTFIEDCINPRSVTLLVKGPNKHTLTQIKDAVRDGLRAIKNAIEDGCVVPGAGAVEVVI 418          
BLAST of FC930984 vs. ExPASy Swiss-Prot
Match: TCPW_HUMAN (T-complex protein 1 subunit zeta-2 OS=Homo sapiens GN=CCT6B PE=1 SV=4)

HSP 1 Score: 79.337 bits (194), Expect = 2.282e-14
Identity = 65/252 (25.79%), Postives = 125/252 (49.60%), Query Frame = 1
Query:   16 QLAVDAVMRLKGS---TNLESIQIIKKPGGSLKDSFLDEGFILDKKIGIGQP---KRIENAKILVANTAMDTDKVKIYGARVRVDSMSKAAEIEGAEKQKMREKVQKII-------AHGINCFV--NRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVM 726
            ++ VD+V+ ++      +L  ++I++       D+ L +G +LD   G   P   KR+E+A IL+ N +++ +K ++        +  K   ++ AE++ + ++VQKII       A     FV  N++ I  F  +  A  GI+A+  A    +ERL+L  GG   ++F++     LGH  L+ E  +GE+K           + T++++G + H L + + ++ D L  +   + D  ++ G G  E+ M
Sbjct:  170 EVVVDSVLAVRRPGYPIDLFMVEIMEMKHKLGTDTKLIQGLVLDH--GARHPDMKKRVEDAFILICNVSLEYEKTEVNSGFFYKTAEEKEKLVK-AERKFIEDRVQKIIDLKDKVCAQSNKGFVVINQKGIDPFSLDSLAKHGIVALRRAKRRNMERLSLACGGMAVNSFEDLTVDCLGHAGLVYEYTLGEEKFTFIEECVNPCSVTLLVKGPNKHTLTQVKDAIRDGLRAIKNAIEDGCMVPGAGAIEVAM 418          
BLAST of FC930984 vs. ExPASy Swiss-Prot
Match: TCPG_DICDI (T-complex protein 1 subunit gamma OS=Dictyostelium discoideum GN=cct3 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.282e-14
Identity = 66/246 (26.83%), Postives = 119/246 (48.37%), Query Frame = 1
Query:   19 LAVDAVMRLK-----GSTNLES---IQIIKKPGGSLKDSFLDEGFILDKKIGIGQPKR-IENAKILVANTAMDTDKVKIYGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLGH-CKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVM 726
            LA+DAVM +      G + ++     ++ K PGG + D  +  G +L+K +   + KR I+N +I++ + +++  K +     V + +    + +   E++ ++   + II    +     + + +  +  F   GI  +         R+A ++G  I S  D  +   +G  C L E   IG++        +  +ACTI+LRGAS  +L+E ER+L DAL V    V D R++ GGG  EM +
Sbjct:  173 LALDAVMTVHIQEEDGRSEIDIKRYAKVEKIPGGDISDCRVIRGVMLNKDVTHPKMKRMIKNPRIVLLDCSLEYKKGES-DTMVDITNEDDFSALLKIEEEYVQRICEDIIKLKPDLVFTEKGVSDLAQHFFVKKGITCLRRLKKSENNRIARISGATIVSRTDELQESDIGTGCGLFEIRKIGDEYFTFLEDCKEPKACTILLRGASKDILNEVERNLTDALNVARNIVLDPRLVPGGGAIEMAL 417          
BLAST of FC930984 vs. ExPASy Swiss-Prot
Match: THS3_HALVO (Thermosome subunit 3 OS=Halobacterium volcanii GN=cct3 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.980e-14
Identity = 54/227 (23.79%), Postives = 104/227 (45.81%), Query Frame = 1
Query:   49 GSTNLESIQIIKKPGGSLKDSFLDEGFILDKK-IGIGQPKRIENAKILVANTAMDTDKVKIYGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVM 726
            G  + + ++++ + G S   + L EG +LDK+ +    P+ + +A + V +  +D  K ++      + S+ +      AE  ++R   + +   G++     + I +      ADAGILA +         LA  TG +   +  + +   LG    +     G+D L    G    +A T+ LRG + HV+ E ER++ DA+ V+   ++   V+ G G  E+ +
Sbjct:  191 GVFHRDDVRVLTRTGASSSATELVEGVVLDKEPVNENMPRSVSDATVAVLDMKLDVRKSEV-DTEYNITSVDQLTAAIDAEDSELRGYAKALADAGVDVVFCTKSIDDRVAGFLADAGILAFKSVKKSDARALARATGAKRLGSLSDLDESDLGRVDAVSIRSFGDDDLAFVEGGAAAKAVTLFLRGGTEHVVYELERAIEDAVDVVVAAIDKGGVVPGAGATEIAI 416          
BLAST of FC930984 vs. ExPASy Swiss-Prot
Match: TCPQ_SCHPO (Probable T-complex protein 1 subunit theta OS=Schizosaccharomyces pombe GN=cct8 PE=2 SV=3)

HSP 1 Score: 76.6406 bits (187), Expect = 1.479e-13
Identity = 56/222 (25.23%), Postives = 107/222 (48.20%), Query Frame = 1
Query:   58 NLESIQIIKKPGGSLKDSFLDEGFILDKKIGIGQPKRIENAKILVANTAMDTDKVKIYGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVE-MGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEM 720
            N+++I+++K  G SL +S + +G +  ++   G   R + AK+ V +  +D  + +  G  V + +  +  +    E+  +   +++I   G+   V    + +          IL I       + RL  V G    +    P   ++G   ++E I IG D++  F  VE + +  TIVLRGA+   LD+ ER++ D + ++   V D+R++FG G  +M
Sbjct:  198 NVDNIRVVKIMGSSLYNSQVVKGMVFPREPE-GTVTRSKEAKVAVFSCPLDISQTETKGT-VLLHNAQEMLDFSKGEENLIESHIKEIYDAGVRVVVTSGNVNDLVLHYLNRFEILVIRVPSKFELRRLCRVVGATPLARMGVPMPEEMGSVDVVETIEIGGDRVTVFRQVEDITRTATIVLRGATKTYLDDLERAIDDGVNIVKALVKDNRLIFGAGASDM 417          
BLAST of FC930984 vs. ExPASy Swiss-Prot
Match: TCPG_ENCCU (T-complex protein 1 subunit gamma OS=Encephalitozoon cuniculi GN=CCT3 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.931e-13
Identity = 67/247 (27.13%), Postives = 124/247 (50.20%), Query Frame = 1
Query:   13 GQLAVDAVMRL----KGSTNLES-IQIIKKPGGSLKDSFLDEGFILDKKIGIGQPKR-IENAKILVANTAMDTDKVKIYGARV--RVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLG-HCKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVM 726
            G LA++AV ++    +   +L++ +++ K  GG+L +S + +G +++K I   Q +R IEN +I++  + ++  K +        + +  ++A EIE   ++++RE  ++II    +  V  + I +    +  +  I  +       I RL+ V G    S  ++ E   +G  C L E I  GE+    FS     +AC++V+RG +  +LDE ER+  DA+ V        ++  GGG  EM M
Sbjct:  170 GNLALEAVKKVYVKEENKCDLKNNMKVEKVLGGNLMESEVVDGVLINKDIIHPQMRRVIENPRIVIIESPLEYKKGESQTNYEFSKENDFTRALEIE---EEQVREMCERIIGVRPDIVVCEKGISDLALSILFENNITGLRRLKKTDISRLSKVCGARSVSRPEDLEERHVGVSCGLFEYIKYGEEYYCKFSRCAHPKACSVVIRGPTKDILDELERNFMDAVKVAKSIFISPKLCPGGGAAEMAM 413          
The following BLAST results are available for this feature:
BLAST of FC930984 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 135
Match NameE-valueIdentityDescription
TCPZ_RABIT6.004e-1524.60T-complex protein 1 subunit zeta OS=Oryctolagus cu... [more]
TCPG_TETPY6.004e-1525.91T-complex protein 1 subunit gamma OS=Tetrahymena p... [more]
TCPZ_DICDI1.024e-1426.18T-complex protein 1 subunit zeta OS=Dictyostelium ... [more]
TCPZ_CHICK1.024e-1425.00T-complex protein 1 subunit zeta OS=Gallus gallus ... [more]
TCPW_BOVIN1.024e-1426.72T-complex protein 1 subunit zeta-2 OS=Bos taurus G... [more]
TCPW_HUMAN2.282e-1425.79T-complex protein 1 subunit zeta-2 OS=Homo sapiens... [more]
TCPG_DICDI2.282e-1426.83T-complex protein 1 subunit gamma OS=Dictyostelium... [more]
THS3_HALVO2.980e-1423.79Thermosome subunit 3 OS=Halobacterium volcanii GN=... [more]
TCPQ_SCHPO1.479e-1325.23Probable T-complex protein 1 subunit theta OS=Schi... [more]
TCPG_ENCCU1.931e-1327.13T-complex protein 1 subunit gamma OS=Encephalitozo... [more]

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Properties
Property NameValue
Genbank descriptionC34100B07EF PostHarvP1 Citrus clementina cDNA clone C34100B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930984 ID=FC930984; Name=FC930984; organism=Citrus clementina; type=EST; length=727bp
TCTCTGGCCGGGGGTCAACTGGCTGTGGATGCTGTTATGAGGCTTAAGGG
CAGCACAAATTTAGAGTCCATCCAAATTATCAAGAAGCCTGGAGGATCAC
TGAAGGATTCCTTTCTAGATGAGGGATTCATTCTTGACAAGAAAATTGGC
ATTGGACAACCAAAACGTATAGAGAATGCAAAAATACTGGTGGCAAATAC
TGCAATGGATACAGATAAAGTGAAGATTTATGGGGCACGTGTTCGTGTTG
ATTCAATGTCAAAGGCCGCTGAGATAGAAGGTGCAGAGAAGCAAAAAATG
AGGGAAAAGGTGCAAAAGATAATAGCTCATGGGATTAACTGCTTCGTTAA
TAGGCAGTTGATTTACAATTTTCCAGAGGAACTCTTTGCAGATGCGGGTA
TACTTGCAATTGAGCATGCTGATTTTGATGGTATAGAGCGTCTGGCTTTA
GTAACTGGTGGTGAAATTGCATCAACCTTTGATAATCCAGAGTCAGTTAA
GCTTGGGCACTGCAAGCTTATTGAGGAAATTATGATTGGCGAGGACAAGT
TGATCCACTTTTCTGGTGTTGAAATGGGTCAGGCTTGTACCATAGTGTTG
AGAGGTGCAAGCCATCATGTGCTTGACGAGGCTGAGCGGTCTCTGCATGA
TGCCTTGTGTGTGCTGTCTCAGACAGTCAATGACAGCAGGGTTTTGTTTG
GAGGTGGATGGCCTGAGATGGTTATGG
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