FC930984

Overview
NameFC930984
Unique NameFC930984
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length727
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15445 contig Ccv1_Contig15445:790..1517. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930984 vs. ExPASy Swiss-Prot
Match: TCPG_MACFA (T-complex protein 1 subunit gamma OS=Macaca fascicularis GN=CCT3 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.060e-11
Identity = 62/245 (25.31%), Postives = 116/245 (47.35%), Query Frame = 1
Query:   19 LAVDAVMRLKGSTNLESIQIIKK-------PGGSLKDSFLDEGFILDKKIGIGQPKR-IENAKILVANTAMDTDKVKIYGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLGH-CKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVM 726
            +A+DAV  ++   N      IKK       PGG ++DS +  G +++K +   + +R I+N +I++ +++++  K +     + +        I   E++ +++  + II    +  +  + I +  +     A I AI         R+A   G  I S  +      +G    L+E   IG++     +  +  +ACTI+LRGAS  +L E ER+L DA+ V    + D +++ GGG  EM +
Sbjct:  175 IALDAVKTVQFEENGRKEIDIKKYAKVEKIPGGIIEDSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGESQ-TDIEITREEDFTRILQMEEEYIQQLCEDIIQLKPDVVITEKGISDLAQHYLMRANITAIRRVRKTDNNRIARACGARIVSRPEELREDDVGTGAGLLEIKKIGDEYFTFITECKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAV 418          
BLAST of FC930984 vs. ExPASy Swiss-Prot
Match: TCPG_MOUSE (T-complex protein 1 subunit gamma OS=Mus musculus GN=Cct3 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.384e-11
Identity = 61/245 (24.90%), Postives = 115/245 (46.94%), Query Frame = 1
Query:   19 LAVDAVMRLKGSTNLESIQIIKK-------PGGSLKDSFLDEGFILDKKIGIGQPKR-IENAKILVANTAMDTDKVKIYGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLGH-CKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVM 726
            +A+DAV  ++   N      IKK       PGG ++DS +  G +++K +   + +R I+N +I++ +++++  K +     + +        I   E++ + +  + II    +  +  + I +  +     A + AI         R+A   G  I S  +      +G    L+E   IG++     +  +  +ACTI+LRGAS  +L E ER+L DA+ V    + D +++ GGG  EM +
Sbjct:  175 IALDAVKTVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGESQ-TDIEITREEDFTRILQMEEEYIHQLCEDIIQLKPDVVITEKGISDLAQHYLMRANVTAIRRVRKTDNNRIARACGARIVSRPEELREDDVGTGAGLLEIKKIGDEYFTFITDCKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAV 418          
BLAST of FC930984 vs. ExPASy Swiss-Prot
Match: TCPG_SCHPO (T-complex protein 1 subunit gamma OS=Schizosaccharomyces pombe GN=cct3 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.361e-11
Identity = 53/222 (23.87%), Postives = 104/222 (46.85%), Query Frame = 1
Query:   73 QIIKKPGGSLKDSFLDEGFILDKKIGIGQPK---RIENAKILVANTAMDTDKVKIYGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLGH-CKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVM 726
            ++ K PGG ++ S + +G +L+K +    PK   RIEN +I++ +  ++  K +     + +   +    I   E+++++     IIA   +  +  + + +  +     A I A+         R+A   G  I +  ++     +G  C L     +G++     +G +  +ACTI+LRG S  +++E ER+L DA+ V        ++  GGG  EM +
Sbjct:  198 RVEKVPGGEIESSCVLDGVMLNKDVT--HPKMRRRIENPRIVLLDCPLEYRKGESQ-TNIEISKDTDWNRILEIEEEQVKRMCDYIIAVKPDLVITEKGVSDLAQHYLLKANITALRRTRKSDNNRIARACGANIVNRLEDLREKDVGTGCGLFYIDKLGDEYYTFLTGCKNPKACTILLRGPSKDIINEVERNLQDAMAVARNVFFHPKLSPGGGATEMAV 416          
BLAST of FC930984 vs. ExPASy Swiss-Prot
Match: TCPG_DROME (T-complex protein 1 subunit gamma OS=Drosophila melanogaster GN=Cctgamma PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 3.084e-11
Identity = 63/244 (25.82%), Postives = 116/244 (47.54%), Query Frame = 1
Query:   16 QLAVDAVMRLKGSTN-------LESIQIIKKPGGSLKDSFLDEGFILDKKIGIGQPKR-IENAKILVANTAMDTDKVKIYGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLGH-CKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEM 720
            ++A+DAV  +  S N           ++ K PGG++++S + +G +++K +   + +R IEN +I++ + +++  K +     V +        +   E++ ++     IIA   +     + + +  +     AGI AI         R+A   G  I +  +      +G    L E   IG++     +  +  +ACTI+LRGAS  +L+E ER+L DAL V    V + R++ GGG  EM
Sbjct:  176 KIALDAVETVTLSENGRLEVDIKRYAKVEKIPGGAIEESCVLKGVMINKDVTHPKMRRLIENPRIVLLDCSLEYKKGESQ-TNVEIIGEQDFTRMLQIEEEFVQRICADIIAVKPDLVFTEKGVSDLAQHYLLKAGITAIRRLRKTDNLRIARACGATIVNRTEELTEKDVGTGAGLFEVKKIGDEYFTFVTECKEPKACTILLRGASKDILNETERNLQDALHVARNLVLEPRLVAGGGAVEM 418          
BLAST of FC930984 vs. ExPASy Swiss-Prot
Match: TCPG_OXYGR (T-complex protein 1 subunit gamma OS=Oxytricha granulifera PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.027e-11
Identity = 62/224 (27.68%), Postives = 111/224 (49.55%), Query Frame = 1
Query:   73 QIIKKPGGSLKDSFLDEGFILDKKIGI-GQPKRIENAKILVANTAMDTDKVKIYGAR--VRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAG----ILAIEHADFDGIERLALVTGGEIASTFDNPESVKLG-HCKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEM 720
            ++ K PGG L++S + +G + +K +   G  + IEN ++++ +  ++  K +        + +   KA  +E  E +KM    + I+    +  +  + + +  +      G    I  I   D +   R+A VTG  IA+  +  +   +G  C L E   IG++     +  E  +AC+I+LRGAS  VL+E ER+LHDAL V    + + +++ GGG  EM
Sbjct:  200 KVEKIPGGLLEESVVLDGVMFNKDVTHPGMRRYIENPRVVLLDCPLEYKKGESMTNMEFTKEEDFKKALMMEEEEVKKMC--AEDILRVKPDVVITEKGVSDTAQHFLLKYGNCTVIRRIRKTDNN---RIARVTGATIANRPEELQESDVGTKCGLFEIKKIGDEYFSFMTKCENPKACSILLRGASKDVLNEIERNLHDALGVARNVMVNPKLVPGGGAIEM 418          
The following BLAST results are available for this feature:
BLAST of FC930984 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 135
Match NameE-valueIdentityDescription
TCPG_MACFA1.060e-1125.31T-complex protein 1 subunit gamma OS=Macaca fascic... [more]
TCPG_MOUSE1.384e-1124.90T-complex protein 1 subunit gamma OS=Mus musculus ... [more]
TCPG_SCHPO2.361e-1123.87T-complex protein 1 subunit gamma OS=Schizosacchar... [more]
TCPG_DROME3.084e-1125.82T-complex protein 1 subunit gamma OS=Drosophila me... [more]
TCPG_OXYGR4.027e-1127.68T-complex protein 1 subunit gamma OS=Oxytricha gra... [more]

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Properties
Property NameValue
Genbank descriptionC34100B07EF PostHarvP1 Citrus clementina cDNA clone C34100B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930984 ID=FC930984; Name=FC930984; organism=Citrus clementina; type=EST; length=727bp
TCTCTGGCCGGGGGTCAACTGGCTGTGGATGCTGTTATGAGGCTTAAGGG
CAGCACAAATTTAGAGTCCATCCAAATTATCAAGAAGCCTGGAGGATCAC
TGAAGGATTCCTTTCTAGATGAGGGATTCATTCTTGACAAGAAAATTGGC
ATTGGACAACCAAAACGTATAGAGAATGCAAAAATACTGGTGGCAAATAC
TGCAATGGATACAGATAAAGTGAAGATTTATGGGGCACGTGTTCGTGTTG
ATTCAATGTCAAAGGCCGCTGAGATAGAAGGTGCAGAGAAGCAAAAAATG
AGGGAAAAGGTGCAAAAGATAATAGCTCATGGGATTAACTGCTTCGTTAA
TAGGCAGTTGATTTACAATTTTCCAGAGGAACTCTTTGCAGATGCGGGTA
TACTTGCAATTGAGCATGCTGATTTTGATGGTATAGAGCGTCTGGCTTTA
GTAACTGGTGGTGAAATTGCATCAACCTTTGATAATCCAGAGTCAGTTAA
GCTTGGGCACTGCAAGCTTATTGAGGAAATTATGATTGGCGAGGACAAGT
TGATCCACTTTTCTGGTGTTGAAATGGGTCAGGCTTGTACCATAGTGTTG
AGAGGTGCAAGCCATCATGTGCTTGACGAGGCTGAGCGGTCTCTGCATGA
TGCCTTGTGTGTGCTGTCTCAGACAGTCAATGACAGCAGGGTTTTGTTTG
GAGGTGGATGGCCTGAGATGGTTATGG
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