FC930984

Overview
NameFC930984
Unique NameFC930984
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length727
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15445 contig Ccv1_Contig15445:790..1517. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930984 vs. ExPASy Swiss-Prot
Match: THSB_METTH (Thermosome subunit beta OS=Methanobacterium thermoautotrophicum GN=thsB PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.922e-29
Identity = 75/238 (31.51%), Postives = 134/238 (56.30%), Query Frame = 1
Query:   16 QLAVDAVMRLK--GSTNLESIQIIKKPGGSLKDSFLDEGFILDK-KIGIGQPKRIENAKILVANTAMDTDKVKIYGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEM 720
            +L VDAV +++  G    + I+I KK G ++ DS L +G I+DK ++  G PK++ENAKI + N  ++  + ++  A +R+   S+       E+Q +R+ V  I+  G N    ++ I +  +   A AG+LA+       +E+L+  TG  I +  ++     LG   ++ E  I  +++I     +  +A TI++RG++ HV+ E ER++ DA+ V++ TV D +V+ GGG PE+
Sbjct:  173 ELIVDAVKQVEEDGEVEKDHIKIEKKEGAAVDDSTLVQGVIIDKERVHPGMPKKVENAKIALLNCPIEVKETEV-DAEIRITDPSQMQAFIEQEEQMIRDMVNSIVDTGANVLFCQKGIDDLAQHYLAKAGVLAVRRVKKSDMEKLSKATGANIVTNIEDLSPEDLGEAGVVSEKKISGEEMIFVEECKEPKAVTILVRGSTEHVVSEVERAIEDAIGVVAATVEDGKVVAGGGAPEI 409          
BLAST of FC930984 vs. ExPASy Swiss-Prot
Match: THS_METKA (Thermosome subunit OS=Methanopyrus kandleri GN=ths PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.511e-29
Identity = 71/220 (32.27%), Postives = 124/220 (56.36%), Query Frame = 1
Query:   64 ESIQIIKKPGGSLKDSFLDEGFILDK-KIGIGQPKRIENAKILVANTAMDTDKVKIYGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEM 720
            + I++ KK GG L+D+ L +G ++DK ++  G P+R+ENAKI + N  ++  + +   A +R+    +       E++ + E V KI   G N    ++ I +  +   A  GILA+       +++LA  TG  I +  D+     LG  +++EE  +  DK+I   G +  +A TI++RG + HV+DEAER++ DA+ V++  + D +V+ GGG PE+
Sbjct:  200 DHIKLEKKEGGGLEDTELVKGMVIDKERVHPGMPRRVENAKIALLNCPIEVKETET-DAEIRITDPEQLQAFIEEEERMLSEMVDKIAETGANVVFCQKGIDDLAQHYLAKKGILAVRRVKKSDMQKLARATGARIVTNIDDLSEEDLGEAEVVEEKKVAGDKMIFVEGCKDPKAVTILIRGGTEHVVDEAERAIEDAIGVVAAALEDGKVVAGGGAPEV 418          
BLAST of FC930984 vs. ExPASy Swiss-Prot
Match: THS_PYRHO (Thermosome subunit OS=Pyrococcus horikoshii GN=ths PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.594e-29
Identity = 77/242 (31.82%), Postives = 135/242 (55.79%), Query Frame = 1
Query:   16 QLAVDAVMRL------KGSTNLESIQIIKKPGGSLKDSFLDEGFILDKKI-GIGQPKRIENAKILVANTAMDTDKVKIYGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEM 720
            +LAV+AV  +      K   ++++I++ KK GG+++D+ L  G ++DK++   G PKRIENAKI + N A++  + +   A +R+ S  +       E++ ++E V KI   G N    ++ I +  +   A  GILA+       +E+LA  TG +I +   +     LG  +L+EE  +  + +I   G +  +A TI++RG + HV+DE ER+L DA+ V+   + D +++ GGG  E+
Sbjct:  176 KLAVEAVKLVAEEKDGKLKVDIDNIKLEKKEGGAVRDTRLIRGVVIDKEVVHPGMPKRIENAKIALINDALEVKETET-DAEIRITSPEQLQAFLEQEEKMLKEMVDKIKEVGANVVFVQKGIDDLAQHYLAKYGILAVRRVKKSDMEKLAKATGAKIVTNIRDLTPEDLGEAELVEERKVAGENMIFVEGCKNPKAVTILIRGGTEHVVDEVERALEDAIKVVKDILEDGKIIAGGGASEI 416          
BLAST of FC930984 vs. ExPASy Swiss-Prot
Match: THSB_THEK1 (Thermosome subunit beta OS=Thermococcus sp. (strain KS-1) GN=thsB PE=3 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 5.594e-29
Identity = 78/242 (32.23%), Postives = 136/242 (56.20%), Query Frame = 1
Query:   16 QLAVDAVMRLK---GST---NLESIQIIKKPGGSLKDSFLDEGFILDKKI-GIGQPKRIENAKILVANTAMDTDKVKIYGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEM 720
            ++AV+AV ++    G T   +L++I+  KK GGS+KD+ L +G ++DK++   G PKR+E AKI + N A++  + +   A +R+ S  +       E++ +RE V KI   G N    ++ I +  +   A  GI+A+       +E+LA  TG +I +   +     LG  +L+E+  +  + +I   G +  +A TI++RG + HV+DE ER+L DA+ V+   V D +++  GG PE+
Sbjct:  176 EIAVEAVKQVAEKVGETYKVDLDNIKFEKKEGGSVKDTQLIKGVVIDKEVVHPGMPKRVEGAKIALINEALEVKETET-DAEIRITSPEQLQAFLEQEEKMLREMVDKIKEVGANVVFVQKGIDDLAQHYLAKYGIMAVRRVKKSDMEKLAKATGAKIVTNVRDLTPEDLGEAELVEQRKVAGENMIFVEGCKNPKAVTILIRGGTEHVVDEVERALEDAVKVVKDIVEDGKIVAAGGAPEI 416          
BLAST of FC930984 vs. ExPASy Swiss-Prot
Match: THSB_PYRKO (Thermosome subunit beta OS=Pyrococcus kodakaraensis GN=thsB PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.594e-29
Identity = 78/242 (32.23%), Postives = 136/242 (56.20%), Query Frame = 1
Query:   16 QLAVDAVMRLK---GST---NLESIQIIKKPGGSLKDSFLDEGFILDKKI-GIGQPKRIENAKILVANTAMDTDKVKIYGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEM 720
            ++AV+AV ++    G T   +L++I+  KK GGS+KD+ L +G ++DK++   G PKR+E AKI + N A++  + +   A +R+ S  +       E++ +RE V KI   G N    ++ I +  +   A  GI+A+       +E+LA  TG +I +   +     LG  +L+E+  +  + +I   G +  +A TI++RG + HV+DE ER+L DA+ V+   V D +++  GG PE+
Sbjct:  176 EIAVEAVKQVAEKVGETYKVDLDNIKFEKKEGGSVKDTQLIKGVVIDKEVVHPGMPKRVEGAKIALINEALEVKETET-DAEIRITSPEQLQAFLEQEEKMLREMVDKIKEVGANVVFVQKGIDDLAQHYLAKYGIMAVRRVKKSDMEKLAKATGAKIVTNVRDLTPEDLGEAELVEQRKVAGENMIFVEGCKNPKAVTILIRGGTEHVVDEVERALEDAVKVVKDIVEDGKIVAAGGAPEI 416          
BLAST of FC930984 vs. ExPASy Swiss-Prot
Match: THSA_SULTO (Thermosome subunit alpha OS=Sulfolobus tokodaii GN=thsA PE=1 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.246e-28
Identity = 73/217 (33.64%), Postives = 122/217 (56.22%), Query Frame = 1
Query:   61 LESIQIIKKPGGSLKDSFLDEGFILDKKI-GIGQPKRIENAKILVANTAMDTDKVKIYGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGG 708
            L+ I+I KK GGS++DS L  G +LDK++   G P+R+E AKI V + A++ +K +I  A++ + S  +       E + +++ V K+ + G N  + ++ I +  +   A  GILA+       IE+L    G  I S+  +     LG+ +L+EE  +G DK++   G +  +A  I+LRG++   LDEAERS++DAL  L   +    ++ GGG
Sbjct:  203 LDLIKIDKKKGGSIEDSMLVHGLVLDKEVVHPGMPRRVEKAKIAVLDAALEVEKPEI-SAKISITSPEQIKAFLDEEAKYLKDMVDKLASIGANVVICQKGIDDVAQHFLAKKGILAVRRVKRSDIEKLEKALGARIISSIKDATPEDLGYAELVEERRVGNDKMVFIEGAKNPKAVNILLRGSNDMALDEAERSINDALHSLRNVLMKPMIVAGGG 418          
BLAST of FC930984 vs. ExPASy Swiss-Prot
Match: THSA_SULSO (Thermosome subunit alpha OS=Sulfolobus solfataricus GN=thsA PE=3 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 1.627e-28
Identity = 74/224 (33.04%), Postives = 127/224 (56.70%), Query Frame = 1
Query:   52 STNLESIQIIKKPGGSLKDSFLDEGFILDKKI-GIGQPKRIENAKILVANTAMDTDKVKIYGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEM 720
            + +L+ I+I KK GGS++DS L +G +LDK++   G P+R+  AKI V + A++ +K +I  A++ + S  +       E + +++ V K+ + G N  + ++ I +  +   A  GILA+       IE+L    G  I S+  +     LG+ +L+EE  +G DK++   G +  +A  I+LRG++   LDEAERS++DAL  L   + +  +L GGG  E+
Sbjct:  199 NVSLDLIKIDKKKGGSIEDSVLVKGLVLDKEVVHPGMPRRVTKAKIAVLDAALEVEKPEI-SAKISITSPEQIKAFLDEESKYLKDMVDKLASIGANVVICQKGIDDIAQHFLAKKGILAVRRVKRSDIEKLEKALGARIISSIKDATPEDLGYAELVEERRVGNDKMVFIEGAKNLKAVNILLRGSNDMALDEAERSINDALHALRNILLEPVILPGGGAIEL 421          
BLAST of FC930984 vs. ExPASy Swiss-Prot
Match: THSA_SULSH (Thermosome subunit alpha OS=Sulfolobus shibatae GN=thsA PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.126e-28
Identity = 74/224 (33.04%), Postives = 127/224 (56.70%), Query Frame = 1
Query:   52 STNLESIQIIKKPGGSLKDSFLDEGFILDKKI-GIGQPKRIENAKILVANTAMDTDKVKIYGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEM 720
            + +L+ I+I KK GGS++DS L +G +LDK++   G P+R+  AKI V + A++ +K +I  A++ + S  +       E + +++ V K+ + G N  + ++ I +  +   A  GILA+       IE+L    G  I S+  +     LG+ +L+EE  +G DK++   G +  +A  I+LRG++   LDEAERS++DAL  L   + +  +L GGG  E+
Sbjct:  199 NVSLDLIKIDKKKGGSIEDSVLVKGLVLDKEVVHPGMPRRVTKAKIAVLDAALEVEKPEI-SAKISITSPEQIKAFLDEESKYLKDMVDKLASIGANVVICQKGIDDIAQHFLAKKGILAVRRVKRSDIEKLEKALGARIISSIKDATPDDLGYAELVEERRVGNDKMVFIEGAKNLKAVNILLRGSNDMALDEAERSINDALHALRNILLEPVILPGGGAIEL 421          
BLAST of FC930984 vs. ExPASy Swiss-Prot
Match: THS_DESSY (Thermosome subunit OS=Desulfurococcus sp. (strain SY) GN=ths PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.626e-28
Identity = 76/242 (31.40%), Postives = 133/242 (54.96%), Query Frame = 1
Query:   16 QLAVDAVMRL------KGSTNLESIQIIKKPGGSLKDSFLDEGFILDKKI-GIGQPKRIENAKILVANTAMDTDKVKIYGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEM 720
            ++AV+AV ++      K   +L++I+  KK G S+ ++ L  G ++DK++   G PKR+ENAKI + N A++  + +   A +R+ S  +       E++ +RE V KI   G N    ++ I +  +   A  GI+A+       +E+LA  TG +I +   +     LG  +L+E+  +  + +I   G +  +A TI++RG + HV+DE ER+L DA+ V+   V D ++L  GG PE+
Sbjct:  176 EIAVEAVRQVAEKVGDKYKVDLDNIKFEKKEGASVHETQLIRGVVIDKEVVHPGMPKRVENAKIALINDALEVKETET-DAEIRITSPEQLQAFLEQEERMLREMVDKIKEVGANVVFVQKGIDDLAQHYLAKYGIMAVRRVKKSDMEKLAKATGAKIVTNVRDLTPEDLGEAELVEQRKVAGENMIFVEGCKNPKAVTILIRGGTEHVVDEVERALEDAVKVVKDIVEDGKILPAGGAPEI 416          
BLAST of FC930984 vs. ExPASy Swiss-Prot
Match: THSB_THEAC (Thermosome subunit beta OS=Thermoplasma acidophilum GN=thsB PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.735e-28
Identity = 72/233 (30.90%), Postives = 129/233 (55.36%), Query Frame = 1
Query:   22 AVDAVMRLKGS---TNLESIQIIKKPGGSLKDSFLDEGFILDK-KIGIGQPKRIENAKILVANTAMDTDKVKIYGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGG 708
            AV +V  L+      + ++IQ++KK GG++ D+ L  G I+DK K+  G P  +++AKI + +  ++  K + +   +R++  S   +    E+  +RE V KI + G N  + ++ I +  +   + AGI A+       +++LA  TG  I ST D   S  LG  + +E++ +GED +   +G +  +A +I++RG + HV+DE ERS+ D+L V++  + D     GGG
Sbjct:  179 AVKSVAELRDGKYYVDFDNIQVVKKQGGAIDDTQLINGIIVDKEKVHPGMPDVVKDAKIALLDAPLEIKKPE-FDTNLRIEDPSMIQKFLAQEENMLREMVDKIKSVGANVVITQKGIDDMAQHYLSRAGIYAVRRVKKSDMDKLAKATGASIVSTIDEISSSDLGTAERVEQVKVGEDYMTFVTGCKNPKAVSILVRGETEHVVDEMERSITDSLHVVASALEDGAYAAGGG 410          
The following BLAST results are available for this feature:
BLAST of FC930984 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 135
Match NameE-valueIdentityDescription
THSB_METTH1.922e-2931.51Thermosome subunit beta OS=Methanobacterium thermo... [more]
THS_METKA2.511e-2932.27Thermosome subunit OS=Methanopyrus kandleri GN=ths... [more]
THS_PYRHO5.594e-2931.82Thermosome subunit OS=Pyrococcus horikoshii GN=ths... [more]
THSB_THEK15.594e-2932.23Thermosome subunit beta OS=Thermococcus sp. (strai... [more]
THSB_PYRKO5.594e-2932.23Thermosome subunit beta OS=Pyrococcus kodakaraensi... [more]
THSA_SULTO1.246e-2833.64Thermosome subunit alpha OS=Sulfolobus tokodaii GN... [more]
THSA_SULSO1.627e-2833.04Thermosome subunit alpha OS=Sulfolobus solfataricu... [more]
THSA_SULSH2.126e-2833.04Thermosome subunit alpha OS=Sulfolobus shibatae GN... [more]
THS_DESSY3.626e-2831.40Thermosome subunit OS=Desulfurococcus sp. (strain ... [more]
THSB_THEAC4.735e-2830.90Thermosome subunit beta OS=Thermoplasma acidophilu... [more]

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Properties
Property NameValue
Genbank descriptionC34100B07EF PostHarvP1 Citrus clementina cDNA clone C34100B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930984 ID=FC930984; Name=FC930984; organism=Citrus clementina; type=EST; length=727bp
TCTCTGGCCGGGGGTCAACTGGCTGTGGATGCTGTTATGAGGCTTAAGGG
CAGCACAAATTTAGAGTCCATCCAAATTATCAAGAAGCCTGGAGGATCAC
TGAAGGATTCCTTTCTAGATGAGGGATTCATTCTTGACAAGAAAATTGGC
ATTGGACAACCAAAACGTATAGAGAATGCAAAAATACTGGTGGCAAATAC
TGCAATGGATACAGATAAAGTGAAGATTTATGGGGCACGTGTTCGTGTTG
ATTCAATGTCAAAGGCCGCTGAGATAGAAGGTGCAGAGAAGCAAAAAATG
AGGGAAAAGGTGCAAAAGATAATAGCTCATGGGATTAACTGCTTCGTTAA
TAGGCAGTTGATTTACAATTTTCCAGAGGAACTCTTTGCAGATGCGGGTA
TACTTGCAATTGAGCATGCTGATTTTGATGGTATAGAGCGTCTGGCTTTA
GTAACTGGTGGTGAAATTGCATCAACCTTTGATAATCCAGAGTCAGTTAA
GCTTGGGCACTGCAAGCTTATTGAGGAAATTATGATTGGCGAGGACAAGT
TGATCCACTTTTCTGGTGTTGAAATGGGTCAGGCTTGTACCATAGTGTTG
AGAGGTGCAAGCCATCATGTGCTTGACGAGGCTGAGCGGTCTCTGCATGA
TGCCTTGTGTGTGCTGTCTCAGACAGTCAATGACAGCAGGGTTTTGTTTG
GAGGTGGATGGCCTGAGATGGTTATGG
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