FC930984

Overview
NameFC930984
Unique NameFC930984
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length727
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15445 contig Ccv1_Contig15445:790..1517. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930984 vs. ExPASy Swiss-Prot
Match: THSA_THEK1 (Thermosome subunit alpha OS=Thermococcus sp. (strain KS-1) GN=thsA PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.432e-26
Identity = 73/242 (30.17%), Postives = 132/242 (54.55%), Query Frame = 1
Query:   16 QLAVDAVMRL------KGSTNLESIQIIKKPGGSLKDSFLDEGFILDKKIGIGQ-PKRIENAKILVANTAMDTDKVKIYGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEM 720
            +LAV+AV ++      K   +L++I+  KK G  +++S L  G ++DK++   + PKR+ENAKI + N A++  K +   A++ + S  +       E++ +++ V  I   G N    ++ I +  +   A  GI+A+       +E+LA  TG +I +   +     LG+ +++EE  +  + +I   G +  +A TI++RG + HV+DE ER+L DA+ V+   + D  VL  GG PE+
Sbjct:  176 KLAVEAVKQVAEKKDGKYVVDLDNIKFEKKAGEGVEESELVRGVVIDKEVVHPRMPKRVENAKIALINEALEVKKTET-DAKINITSPDQLMSFLEQEEKMLKDMVDHIAQTGANVVFVQKGIDDLAQHYLAKYGIMAVRRVKKSDMEKLAKATGAKIVTNVKDLTPEDLGYAEVVEERKLAGENMIFVEGCKNPKAVTILIRGGTEHVIDEVERALEDAVKVVKDVMEDGAVLPAGGAPEI 416          
BLAST of FC930984 vs. ExPASy Swiss-Prot
Match: THSA_PYRKO (Thermosome subunit alpha OS=Pyrococcus kodakaraensis GN=thsA PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.432e-26
Identity = 73/242 (30.17%), Postives = 132/242 (54.55%), Query Frame = 1
Query:   16 QLAVDAVMRL------KGSTNLESIQIIKKPGGSLKDSFLDEGFILDKKIGIGQ-PKRIENAKILVANTAMDTDKVKIYGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEM 720
            +LAV+AV ++      K   +L++I+  KK G  +++S L  G ++DK++   + PKR+ENAKI + N A++  K +   A++ + S  +       E++ +++ V  I   G N    ++ I +  +   A  GI+A+       +E+LA  TG +I +   +     LG+ +++EE  +  + +I   G +  +A TI++RG + HV+DE ER+L DA+ V+   + D  VL  GG PE+
Sbjct:  176 KLAVEAVKQVAEKKDGKYVVDLDNIKFEKKAGEGVEESELVRGVVIDKEVVHPRMPKRVENAKIALINEALEVKKTET-DAKINITSPDQLMSFLEQEEKMLKDMVDHIAQTGANVVFVQKGIDDLAQHYLAKYGIMAVRRVKKSDMEKLAKATGAKIVTNVKDLTPEDLGYAEVVEERKLAGENMIFVEGCKNPKAVTILIRGGTEHVIDEVERALEDAVKVVKDVMEDGAVLPAGGAPEI 416          
BLAST of FC930984 vs. ExPASy Swiss-Prot
Match: TCPH_MOUSE (T-complex protein 1 subunit eta OS=Mus musculus GN=Cct7 PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.432e-26
Identity = 73/239 (30.54%), Postives = 122/239 (51.05%), Query Frame = 1
Query:   16 QLAVDAVMRLKGSTNLESIQIIKKPGGSLKDSFLDEGFILDKKIGIG----QPKRIENAKILVANTAMDTDKVKIYGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEM 720
            ++ VDAVM L     L+ I I K  GG+L++S L  G    K         QPK+ +N KI + N  ++  K +   A +RV ++     I  AE   + +K++KI   G    +++  I +   + FAD  +        + ++R  +  GG I ++ +      LGHC++ EE  IG ++   F+G    + CTI+LRG +   ++E ERSLHDA+ ++ + + +  V+ GGG  EM
Sbjct:  177 KMVVDAVMMLDELLQLKMIGIKKVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKYKNPKIALLNVELEL-KAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLEKIHQSGAKVILSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMMACGGSIQTSVNALVPDVLGHCQVFEETQIGGERYNFFTGCPKAKTCTIILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEM 414          
BLAST of FC930984 vs. ExPASy Swiss-Prot
Match: TCPE_SCHPO (T-complex protein 1 subunit epsilon OS=Schizosaccharomyces pombe GN=cct5 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.432e-26
Identity = 74/241 (30.71%), Postives = 130/241 (53.94%), Query Frame = 1
Query:   19 LAVDAVMRL----KGSTNLESIQIIKKPGGSLKDSFLDEGFILDKKIGIGQ-PKRIENAKILVANTAMDTDKVKIYGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIG--EDKLIHFSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEM 720
            +AVDAV+ +    +   + E I++  K GGS+ D+ L +G ++DK +   Q P RIENAKI +     +  K K    ++ + S+S+   ++  EK+K +E ++ +   G N  + +    +    L     + A+       IE +A+ T G I   F++  S KLG   ++ E+  G   DK++        +A T+ +RG++  ++DEA+R+LHDALCV+   + D+RV++GGG  E+
Sbjct:  190 IAVDAVLSVADLQRKDVDFELIKVDGKVGGSVDDTKLVKGVVVDKDMSHPQMPHRIENAKIAILTCPFEPPKPKTKH-KLDITSVSEFEALQAYEKEKFQEMIKHVKDAGANLVICQWGFDDEANHLLLQNNLPAVRWVGGPEIELIAIATNGRIVPRFEDLSSDKLGSAGIVREVSFGTTRDKILVIEKCANSRAVTVFVRGSNKMIVDEAKRALHDALCVVRNLIRDNRVVYGGGAAEI 429          
BLAST of FC930984 vs. ExPASy Swiss-Prot
Match: THSA_THEK8 (Thermosome subunit alpha OS=Thermococcus sp. (strain KS-8) GN=thsA PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.788e-26
Identity = 73/242 (30.17%), Postives = 131/242 (54.13%), Query Frame = 1
Query:   16 QLAVDAVMRL------KGSTNLESIQIIKKPGGSLKDSFLDEGFILDKKIGIGQ-PKRIENAKILVANTAMDTDKVKIYGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEM 720
            +LAVDAV ++      K   +L++I+  KK G  +++S L  G ++DK++   + PKR+E AKI + N A++  K +   A++ + S  +       E++ +++ V  I   G N    ++ I +  +   A  GI+A+       +E+LA  TG +I +   +     LG+ +++EE  +  + +I   G +  +A TI++RG + HV+DE ER+L DA+ V+   + D  VL  GG PE+
Sbjct:  176 KLAVDAVKQVAEKKDGKYVVDLDNIKFEKKAGEGVEESELVRGVVIDKEVVHPRMPKRVEGAKIALINEALEVKKTET-DAKINITSPDQLMSFLEQEEKMLKDMVDHIAQTGANVVFVQKGIDDLAQHYLAKYGIMAVRRVKKSDMEKLAKATGAKIVTNVKDLTPEDLGYAEIVEERKLAGENMIFVEGCKNPKAVTILIRGGTEHVIDEVERALEDAVKVVKDVMEDGAVLPAGGAPEI 416          
BLAST of FC930984 vs. ExPASy Swiss-Prot
Match: TCPE_PONAB (T-complex protein 1 subunit epsilon OS=Pongo abelii GN=CCT5 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.560e-26
Identity = 76/241 (31.54%), Postives = 129/241 (53.53%), Query Frame = 1
Query:   16 QLAVDAVMRL----KGSTNLESIQIIKKPGGSLKDSFLDEGFILDKKIGIGQ-PKRIENAKILVANTAMDTDKVKIYGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIG--EDKLIHFSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPE 717
            ++AV+AV+ +    +   + E I++  K GG L+D+ L +G I+DK     + PK++E+AKI +     +  K K    ++ V S+     ++  EK+K  E +Q+I   G N  + +    +    L     + A+       IE +A+ TGG I   F    + KLG   L++EI  G  +DK++     +  +A TI +RG +  +++EA+RSLHDALCV+   + D+RV++GGG  E
Sbjct:  187 EIAVNAVLTVADMERRDVDFELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPRMPKKVEDAKIAILTCPFEPPKPKTKH-KLDVTSVEDYKALQKYEKEKFEEMIQQIKETGANLAICQWGFDDEANHLLLQNNLPAVRWVGGPEIELIAIATGGRIVPRFSELTAEKLGFAGLVQEISFGTTKDKMLVIEQCKNSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAE 426          
BLAST of FC930984 vs. ExPASy Swiss-Prot
Match: TCPE_RAT (T-complex protein 1 subunit epsilon OS=Rattus norvegicus GN=Cct5 PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.290e-25
Identity = 77/242 (31.82%), Postives = 127/242 (52.48%), Query Frame = 1
Query:   16 QLAVDAVMRL----KGSTNLESIQIIKKPGGSLKDSFLDEGFILDKKIGIGQ-PKRIENAKILVANTAMDTDKVKIYGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIG--EDKLIHFSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEM 720
            ++AV+AV+ +    +   + E I++  K GG L+D+ L +G I+DK     Q PK + NAKI +     +  K K    ++ V S+     ++  EK+K  E + +I   G N  + +    +    L    G+ A+       IE +A+ TGG I   F    S KLG   ++ EI  G  +DK++     +  +A TI +RG +  +++EA+RSLHDALCV+   + D+RV++GGG  E+
Sbjct:  187 EIAVNAVLTVADMERRDVDFELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMPKEVLNAKIAILTCPFEPPKPKTKH-KLDVTSVEDYKALQKYEKEKFEEMIAQIKETGANLAICQWGFDDEANHLLLQNGLPAVRWVGGPEIELIAIATGGRIVPRFSELTSEKLGFAGVVREISFGTTKDKMLVIEQCKNSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEI 427          
BLAST of FC930984 vs. ExPASy Swiss-Prot
Match: TCPE_MOUSE (T-complex protein 1 subunit epsilon OS=Mus musculus GN=Cct5 PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.290e-25
Identity = 76/242 (31.40%), Postives = 130/242 (53.72%), Query Frame = 1
Query:   16 QLAVDAVMRL----KGSTNLESIQIIKKPGGSLKDSFLDEGFILDKKIGIGQ-PKRIENAKILVANTAMDTDKVKIYGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIG--EDKLIHFSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEM 720
            ++AV+AV+ +    +   + E I++  K GG L+D+ L +G I+DK     Q PK++ +AKI +     +  K K    ++ V S+     ++  EK+K  E +++I   G N  + +    +    L    G+ A+       IE +A+ TGG I   F    S KLG   +++EI  G  +DK++     +  +A TI +RG +  +++EA+RSLHDALCV+   + D+RV++GGG  E+
Sbjct:  187 EIAVNAVLTVADMERRDVDFELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMPKKVVDAKIAILTCPFEPPKPKTKH-KLDVMSVEDYKALQKYEKEKFEEMIKQIKETGANLAICQWGFDDEANHLLLQNGLPAVRWVGGPEIELIAIATGGRIVPRFSELTSEKLGFAGVVQEISFGTTKDKMLVIEKCKNSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEI 427          
BLAST of FC930984 vs. ExPASy Swiss-Prot
Match: TCPA_TETPY (T-complex protein 1 subunit alpha OS=Tetrahymena pyriformis PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.290e-25
Identity = 76/251 (30.28%), Postives = 133/251 (52.99%), Query Frame = 1
Query:   16 QLAVDAVMRLK-----GSTN--LESIQIIKKPGGSLKDSFLDEGFILDKKIGIGQPK-RIENAKILVANTAMDTDKVKIYGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEIASTFDNPESVK------LGHCKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVM 726
            Q+ VDAV  +K     G T   +++++IIK  G S   S L  G++L  +    Q K RIE AKI + +  ++  ++++ G ++ V+      +I   E + ++E+ +KII  G N  +    + +   +   +AG++ +   D   + RLA  TGG I +T   PE  +      LG C  + E  +G++  I F G +     +I++RGA+  ++DE +RSLHD+LCV+ +T+    V+ GGG  E+ +
Sbjct:  170 QIVVDAVESVKMTNLMGDTKYPIKNVKIIKSHGQSTLQSQLIRGYVLQTQRCDQQMKTRIEKAKIALLDFNLNKFRLQM-GIQILVNDPKNLEKIRFKECEILKERCKKIIEAGANVIITSAGMDDVATKYLVEAGVMGLRRVDKHDLRRLAKATGGTIVTTLATPEGDEVFEASYLGECAEVYEEAVGDNDCIFFKGTKRANCASIIIRGANEFMVDEVDRSLHDSLCVVKRTLESGYVVPGGGAVEIAL 419          
BLAST of FC930984 vs. ExPASy Swiss-Prot
Match: THS_METTL (Thermosome subunit OS=Methanococcus thermolithotrophicus GN=ths PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.200e-25
Identity = 68/234 (29.06%), Postives = 127/234 (54.27%), Query Frame = 1
Query:   22 AVDAVMRLKGSTNLESIQIIKKPGGSLKDSFLDEGFILDK-KIGIGQPKRIENAKILVANTAMDTDKVKIYGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEM 720
            AV AV+   G  + + I+I KK G S+ ++ L  G ++DK ++    PK+IENAKI + N  ++  + +   A +R+   +K  E    E++ +++ V  I A G N    ++ I +  +   A  GILA+       +E+L+  TG  + +   + ++  LG   ++EE  I  D +I     +  +A T+++RG + HV++E  R++ DA+ V++ T+ D +++ GGG  E+
Sbjct:  179 AVTAVVDESGKVDKDLIKIEKKEGASVDETELINGVLIDKERVSPQMPKKIENAKIALLNCPIEVKETET-DAEIRITDPTKLMEFIEQEEKMLKDMVDTIKASGANVLFCQKGIDDLAQHYLAKEGILAVRRVKKSDMEKLSKATGANVVTNIKDLKAEDLGEAGIVEERKIAGDAMIFVEECKHPKAVTMLIRGTTEHVIEEVARAVDDAIGVVACTIEDGKIVAGGGAAEI 411          
The following BLAST results are available for this feature:
BLAST of FC930984 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 135
Match NameE-valueIdentityDescription
THSA_THEK14.432e-2630.17Thermosome subunit alpha OS=Thermococcus sp. (stra... [more]
THSA_PYRKO4.432e-2630.17Thermosome subunit alpha OS=Pyrococcus kodakaraens... [more]
TCPH_MOUSE4.432e-2630.54T-complex protein 1 subunit eta OS=Mus musculus GN... [more]
TCPE_SCHPO4.432e-2630.71T-complex protein 1 subunit epsilon OS=Schizosacch... [more]
THSA_THEK85.788e-2630.17Thermosome subunit alpha OS=Thermococcus sp. (stra... [more]
TCPE_PONAB7.560e-2631.54T-complex protein 1 subunit epsilon OS=Pongo abeli... [more]
TCPE_RAT1.290e-2531.82T-complex protein 1 subunit epsilon OS=Rattus norv... [more]
TCPE_MOUSE1.290e-2531.40T-complex protein 1 subunit epsilon OS=Mus musculu... [more]
TCPA_TETPY1.290e-2530.28T-complex protein 1 subunit alpha OS=Tetrahymena p... [more]
THS_METTL2.200e-2529.06Thermosome subunit OS=Methanococcus thermolithotro... [more]

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Properties
Property NameValue
Genbank descriptionC34100B07EF PostHarvP1 Citrus clementina cDNA clone C34100B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930984 ID=FC930984; Name=FC930984; organism=Citrus clementina; type=EST; length=727bp
TCTCTGGCCGGGGGTCAACTGGCTGTGGATGCTGTTATGAGGCTTAAGGG
CAGCACAAATTTAGAGTCCATCCAAATTATCAAGAAGCCTGGAGGATCAC
TGAAGGATTCCTTTCTAGATGAGGGATTCATTCTTGACAAGAAAATTGGC
ATTGGACAACCAAAACGTATAGAGAATGCAAAAATACTGGTGGCAAATAC
TGCAATGGATACAGATAAAGTGAAGATTTATGGGGCACGTGTTCGTGTTG
ATTCAATGTCAAAGGCCGCTGAGATAGAAGGTGCAGAGAAGCAAAAAATG
AGGGAAAAGGTGCAAAAGATAATAGCTCATGGGATTAACTGCTTCGTTAA
TAGGCAGTTGATTTACAATTTTCCAGAGGAACTCTTTGCAGATGCGGGTA
TACTTGCAATTGAGCATGCTGATTTTGATGGTATAGAGCGTCTGGCTTTA
GTAACTGGTGGTGAAATTGCATCAACCTTTGATAATCCAGAGTCAGTTAA
GCTTGGGCACTGCAAGCTTATTGAGGAAATTATGATTGGCGAGGACAAGT
TGATCCACTTTTCTGGTGTTGAAATGGGTCAGGCTTGTACCATAGTGTTG
AGAGGTGCAAGCCATCATGTGCTTGACGAGGCTGAGCGGTCTCTGCATGA
TGCCTTGTGTGTGCTGTCTCAGACAGTCAATGACAGCAGGGTTTTGTTTG
GAGGTGGATGGCCTGAGATGGTTATGG
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