FC930987

Overview
NameFC930987
Unique NameFC930987
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length734
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930987 vs. ExPASy Swiss-Prot
Match: LIMK1_XENLA (LIM domain kinase 1 OS=Xenopus laevis GN=limk1 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.112e-11
Identity = 43/133 (32.33%), Postives = 70/133 (52.63%), Query Frame = 1
Query:   37 RTFNFITEMFTSGTLREYRKKY-TRVDIRAVKNWARQILRGIAYLHGHDPPVIHRDLKCDNIFVNGHLGQIKIGDLGLAAIL--------RGSQQAHSVIGTPEFMAPELYE-EDYNELVDIYSFGMCVLEML 405
            +  NFITE    GTLR   K   T        ++AR I  G+ YLH  +  +IHRDL   N  V    G + + + GL+ ++        +  ++ ++V+G P +MAPE+     Y+E VD++SFG+ + E++
Sbjct:  382 KRLNFITEYIPGGTLRRVIKSMDTHCPWNQRVSFARDIAAGMTYLHSMN--IIHRDLNSHNCLVRED-GGLVVANFGLSRLIPEETRDLRKDRRKRYTVVGNPYWMAPEMINGRSYDESVDVFSFGIVICEII 511          
BLAST of FC930987 vs. ExPASy Swiss-Prot
Match: KPCL_RAT (Protein kinase C eta type OS=Rattus norvegicus GN=Prkch PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.112e-11
Identity = 43/146 (29.45%), Postives = 78/146 (53.42%), Query Frame = 1
Query:   49 FITEMFTSGTLREYRKKYTRVDIRAVKNWARQILRGIAYLHGHDPPVIHRDLKCDNIFVNGHLGQIKIGDLGLA--AILRGSQQAHSVIGTPEFMAPELYEED-YNELVDIYSFGMCVLEMLTSDYPYSECSNPAQIYKKVTSGKL 477
            F+ E    G L  + +K  R D    + +A +I+  + +LH  +  +I+RDLK DN+ ++ H G  K+ D G+    I  G   A +  GTP+++APE+ +E  Y   VD ++ G+ + EML    P+ E  N   +++ + + ++
Sbjct:  431 FVMEFVNGGDLMFHIQKSRRFDEARARFYAAEIISALMFLH--EKGIIYRDLKLDNVLLD-HEGHCKLADFGMCKEGICNGVTTA-TFCGTPDYIAPEILQEMLYGPAVDWWAMGVLLYEMLCGHAPF-EAENEDDLFEAILNDEV 571          
BLAST of FC930987 vs. ExPASy Swiss-Prot
Match: KPCL_MOUSE (Protein kinase C eta type OS=Mus musculus GN=Prkch PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.112e-11
Identity = 43/146 (29.45%), Postives = 78/146 (53.42%), Query Frame = 1
Query:   49 FITEMFTSGTLREYRKKYTRVDIRAVKNWARQILRGIAYLHGHDPPVIHRDLKCDNIFVNGHLGQIKIGDLGLA--AILRGSQQAHSVIGTPEFMAPELYEED-YNELVDIYSFGMCVLEMLTSDYPYSECSNPAQIYKKVTSGKL 477
            F+ E    G L  + +K  R D    + +A +I+  + +LH  +  +I+RDLK DN+ ++ H G  K+ D G+    I  G   A +  GTP+++APE+ +E  Y   VD ++ G+ + EML    P+ E  N   +++ + + ++
Sbjct:  431 FVMEFVNGGDLMFHIQKSRRFDEARARFYAAEIISALMFLH--EKGIIYRDLKLDNVLLD-HEGHCKLADFGMCKEGICNGVTTA-TFCGTPDYIAPEILQEMLYGPAVDWWAMGVLLYEMLCGHAPF-EAENEDDLFEAILNDEV 571          
BLAST of FC930987 vs. ExPASy Swiss-Prot
Match: KPCD_HUMAN (Protein kinase C delta type OS=Homo sapiens GN=PRKCD PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 9.112e-11
Identity = 41/127 (32.28%), Postives = 69/127 (54.33%), Query Frame = 1
Query:   49 FITEMFTSGTLREYRKKYTRVDIRAVKNWARQILRGIAYLHGHDPPVIHRDLKCDNIFVNGHLGQIKIGDLGLAAI-LRGSQQAHSVIGTPEFMAPELYEE-DYNELVDIYSFGMCVLEMLTSDYPY 423
            F+ E    G L  + +   R ++     +A +I+ G+ +LH     +I+RDLK DN+ ++   G IKI D G+    + G  +A +  GTP+++APE+ +   Y   VD +SFG+ + EML    P+
Sbjct:  425 FVMEFLNGGDLMYHIQDKGRFELYRATFYAAEIMCGLQFLHSKG--IIYRDLKLDNVLLDRD-GHIKIADFGMCKENIFGESRASTFCGTPDYIAPEILQGLKYTFSVDWWSFGVLLYEMLIGQSPF 548          
BLAST of FC930987 vs. ExPASy Swiss-Prot
Match: KCC1_SCHPO (Calcium/calmodulin-dependent protein kinase type I OS=Schizosaccharomyces pombe GN=cmk1 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.112e-11
Identity = 62/214 (28.97%), Postives = 101/214 (47.20%), Query Frame = 1
Query:   52 ITEMFTSGTLREY---RKKYTRVDIRAVKNWARQILRGIAYLHGHDPPVIHRDLKCDNIFVNGH--LGQIKIGDLGLAAILRGSQ--QAHSVIGTPEFMAPELYEE-DYNELVDIYSFGMCVLEMLTSDYPYSECSNPAQIYKKVTSGKL---PGAFHRIQDAEARRFVGKCLEN-VSKRLPAKELLLDPFLASDAGEPLLIPQVPSFQNLNPN 657
            ITE+ T G L +    +  +   D  A+    R     + YLH  D  ++HRDLK +N+          + I D GL+     SQ     +  GTPE+MAPE++    Y + VD+++ G+    +L+   P++  S   ++ + + + +       +  I +  A+ F+ KCLEN  SKRL A + L  PFL+          + P+  NL PN
Sbjct:  107 ITELATGGELFDRICAKGSFYEADAAALM---RTTTSAVKYLH--DNGIVHRDLKPENLLYRSKDPNSDLLIADFGLSHFYEDSQYYMLMTACGTPEYMAPEVFRRTGYGKPVDMWAIGVITYFLLSGYTPFARPSQ-VEVIEAILANEYTFNDPCWSGISET-AKDFIKKCLENDPSKRLTAADALKHPFLSE---------KRPATSNLLPN 304          
BLAST of FC930987 vs. ExPASy Swiss-Prot
Match: FRAY2_DICDI (Serine/threonine-protein kinase fray2 OS=Dictyostelium discoideum GN=fray2 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.112e-11
Identity = 49/164 (29.88%), Postives = 81/164 (49.39%), Query Frame = 1
Query:  139 RQILRGIAYLHGHDPPVIHRDLKCDNIFVNGHLGQIKIGDLGLAAIL--RGSQQAHSVIGTPEFMAPELYEE-DYNELVDIYSFGMCVLEMLTSDYPYSECSNPAQIYKKVTSGKLPGAFHRIQDAEARRF---VGKCLENVSKRLPAKELLLDPFLASDAGEP 612
            ++ L+ I Y H      IHRD+K  NI ++ + G I++ D G++A L   G    ++ +GTP +MAPE+ E+ +Y+  VDI+SFG+  LE+     P++E   P ++         P      +   +  F   V KCL+    + P    LL+      A +P
Sbjct:  177 KEALKAICYFHKTGR--IHRDIKSGNILIDSN-GNIQLSDFGVSATLIDTGETSRNTFVGTPCWMAPEIMEQVNYDYAVDIWSFGITALELARGKAPFAEYP-PMKVLLLTLQNPPPSLEGDGESKWSHSFKDLVEKCLQKDPSKRPLPSKLLEHRFFKQAKKP 336          
BLAST of FC930987 vs. ExPASy Swiss-Prot
Match: DKF2_CAEBR (Serine/threonine-protein kinase dkf-2 OS=Caenorhabditis briggsae GN=dkf-2 PE=3 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 9.112e-11
Identity = 38/111 (34.23%), Postives = 63/111 (56.76%), Query Frame = 1
Query:  106 RVDIRAVKNWARQILRGIAYLHGHDPPVIHRDLKCDNIFVNGH--LGQIKIGDLGLAAILRGSQQAHSVIGTPEFMAPE-LYEEDYNELVDIYSFGMCVLEMLTSDYPYSE 429
            R+  R  +    QIL  + YLH  +  ++H DLK +NI +N +    Q+K+ D G A I+       SV+GTP ++APE L  + +N  +D++S G+ V   L+  +P++E
Sbjct:  985 RLSERTTQFLVAQILEALRYLHHQN--IVHCDLKPENILLNSNSDFPQVKLCDFGFARIIGEKSFRRSVVGTPAYLAPEVLRNKGFNRSLDMWSVGVIVYVSLSGTFPFNE 1093          
BLAST of FC930987 vs. ExPASy Swiss-Prot
Match: DKF1_CAEBR (Serine/threonine-protein kinase dkf-1 OS=Caenorhabditis briggsae GN=dkf-1 PE=3 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 9.112e-11
Identity = 51/166 (30.72%), Postives = 83/166 (50.00%), Query Frame = 1
Query:  106 RVDIRAVKNWARQILRGIAYLHGHDPPVIHRDLKCDNIFVN---GHLGQIKIGDLGLAAILRGSQQAHSVIGTPEFMAPE-LYEEDYNELVDIYSFGMCVLEMLTSDYPYSECSNPAQIYKKVTSGKL-----------PGAFHRIQ-----DAEARRFVGKCLEN 543
            R++ RA K    QIL  + YLH  D  + H DLK +N+ ++    +  Q KI D G A  +  SQ   +V+GTP ++ PE L  + YN+ +D++S G+ +   L+  +P++E      I +++ +              P A   IQ     + EAR  + KCLE+
Sbjct:  560 RLNSRATKFLLVQILCALKYLH--DQGIAHCDLKPENVLLSDMGSNFPQTKICDFGYARFIPESQFRKTVVGTPAYLPPEVLQRKGYNKSLDMWSVGVIIYVTLSGTFPFNE-GEEVSISEQIQNASFMFPTEPWSEVEPLAVDLIQKLLKVEIEARMSIEKCLEH 722          
BLAST of FC930987 vs. ExPASy Swiss-Prot
Match: CIPKK_ORYSJ (CBL-interacting protein kinase 20 OS=Oryza sativa subsp. japonica GN=CIPK20 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.112e-11
Identity = 55/200 (27.50%), Postives = 98/200 (49.00%), Query Frame = 1
Query:  121 AVKNWARQILRGIAYLHGHDPPVIHRDLKCDNIFVN----GHLGQIKIGDLGLAAILRGSQQ---AHSVIGTPEFMAPELY-EEDYN-ELVDIYSFGMCVLEMLTSDYPYSECSNPAQIYKKVTSG--KLPGAFHRIQDAEARRFVGKCLE-NVSKRLPAKELLLDP-FLASDAGEPLLIPQVPSFQNLNPNGAVMELVP 681
            A + +  Q++  + + H     V HRDLK +N+ V+    G  G +K+ D GL+A+    +     H+  GTP ++APE+  ++ Y+    D++S G+ +  +L    P+ + SN  ++YKK+T+G  K+P  F      +AR  + + L+ N + R+   EL+  P F       P     +   +   P  A M + P
Sbjct:  115 AARRYFHQLVAAVDFCHSRG--VYHRDLKPENLLVDDDGSGGGGNLKVTDFGLSALSASRRHDGLLHTTCGTPSYVAPEIIGDKGYDGATADVWSCGVILFLLLAGYLPFFD-SNLMEMYKKITNGEFKVPDWF----TPDARSLISRLLDPNPTTRITIDELVKHPWFKKGHTKRPASSNTMKLNEEEKPANAAMNMKP 307          
BLAST of FC930987 vs. ExPASy Swiss-Prot
Match: AAPK2_RAT (5'-AMP-activated protein kinase catalytic subunit alpha-2 OS=Rattus norvegicus GN=Prkaa2 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.112e-11
Identity = 59/220 (26.82%), Postives = 103/220 (46.82%), Query Frame = 1
Query:   43 FNFITEMFTSGTLREYRKKYTRVDIRAVKNWARQILRGIAYLHGHDPPVIHRDLKCDNIFVNGHLGQIKIGDLGLAAILRGSQQAHSVIGTPEFMAPELYEEDY--NELVDIYSFGMCVLEMLTSDYPYSECSNPAQIYKKVTSG--KLPGAFHRIQDAEARRFVGKCLENVSKRLPAKELLLDPFLASDAGEPLLIPQVPSFQ-NLNPNGAVMELVPKF 687
            F  + E  + G L +Y  K+ RV+    +   +QIL  + Y H H   V+HRDLK +N+ ++  +   KI D GL+ ++   +   +  G+P + APE+          VDI+S G+ +  +L    P+ +   P  ++KK+  G   +P   +R   + A   +     +  KR   K++    +   D     L P+ PS+  N+  + AV E+  KF
Sbjct:   89 FFMVMEYVSGGELFDYICKHGRVEEVEARRLFQQILSAVDYCHRH--MVVHRDLKPENVLLDAQM-NAKIADFGLSNMMSDGEFLRTSCGSPNYAAPEVISGRLYAGPEVDIWSCGVILYALLCGTLPFDDEHVPT-LFKKIRGGVFYIPEYLNR---SIATLLMHMLQVDPLKRATIKDIREHEWFKQDL-PSYLFPEDPSYDANVIDDEAVKEVCEKF 300          
The following BLAST results are available for this feature:
BLAST of FC930987 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 480
Match NameE-valueIdentityDescription
LIMK1_XENLA9.112e-1132.33LIM domain kinase 1 OS=Xenopus laevis GN=limk1 PE=... [more]
KPCL_RAT9.112e-1129.45Protein kinase C eta type OS=Rattus norvegicus GN=... [more]
KPCL_MOUSE9.112e-1129.45Protein kinase C eta type OS=Mus musculus GN=Prkch... [more]
KPCD_HUMAN9.112e-1132.28Protein kinase C delta type OS=Homo sapiens GN=PRK... [more]
KCC1_SCHPO9.112e-1128.97Calcium/calmodulin-dependent protein kinase type I... [more]
FRAY2_DICDI9.112e-1129.88Serine/threonine-protein kinase fray2 OS=Dictyoste... [more]
DKF2_CAEBR9.112e-1134.23Serine/threonine-protein kinase dkf-2 OS=Caenorhab... [more]
DKF1_CAEBR9.112e-1130.72Serine/threonine-protein kinase dkf-1 OS=Caenorhab... [more]
CIPKK_ORYSJ9.112e-1127.50CBL-interacting protein kinase 20 OS=Oryza sativa ... [more]
AAPK2_RAT9.112e-1126.825'-AMP-activated protein kinase catalytic subunit ... [more]

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Properties
Property NameValue
Genbank descriptionC34100B10EF PostHarvP1 Citrus clementina cDNA clone C34100B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930987 ID=FC930987; Name=FC930987; organism=Citrus clementina; type=EST; length=734bp
ATTCGATTCTACGCGTCTTGGATTGATGTTGATCGAAGAACCTTCAATTT
CATCACTGAAATGTTCACCTCTGGCACCCTTAGAGAGTACAGGAAAAAGT
ACACGCGAGTGGATATTCGTGCGGTTAAGAACTGGGCACGACAAATTCTG
CGAGGAATTGCTTATCTGCACGGCCATGACCCTCCAGTGATACACAGAGA
CCTCAAATGTGATAACATTTTCGTCAATGGCCATCTTGGGCAAATCAAAA
TTGGAGATCTAGGCCTAGCAGCTATTCTCCGCGGCTCTCAGCAAGCTCAC
AGTGTTATAGGCACCCCTGAATTCATGGCCCCCGAATTGTACGAAGAGGA
TTATAATGAGCTAGTTGATATTTACTCCTTTGGCATGTGTGTGTTAGAAA
TGCTTACATCCGACTACCCATATAGCGAGTGCTCCAATCCTGCACAAATT
TACAAGAAAGTGACTTCGGGGAAATTGCCAGGAGCATTCCACAGAATTCA
AGATGCAGAGGCACGGCGTTTTGTGGGGAAATGTTTGGAGAATGTTTCAA
AAAGGTTACCAGCTAAAGAGCTCTTGCTCGACCCGTTTCTAGCTTCTGAT
GCAGGGGAGCCCTTGCTTATCCCACAAGTCCCAAGTTTTCAAAATTTAAA
TCCTAATGGAGCAGTGATGGAGCTAGTGCCAAAGTTTGCGGTTGATTCTG
ATCGAAGGAAGAGTACTGATATGACCATAACAGG
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