FC930988

Overview
NameFC930988
Unique NameFC930988
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length717
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930988_ssr27 microsatellite FC930988_ssr27:27..40. BLAST: Citrus ESTs to Prunus persica proteins V1
FC930988_ssr205 microsatellite FC930988_ssr205:205..216. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15248 contig Ccv1_Contig15248:1..719. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC930988 vs. ExPASy Swiss-Prot
Match: PP2A3_ORYSJ (Serine/threonine-protein phosphatase PP2A-3 catalytic subunit OS=Oryza sativa subsp. japonica GN=PP2A3 PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 3.156e-67
Identity = 66/85 (77.65%), Postives = 75/85 (88.24%), Query Frame = 1 
Query:  250 SSHGNLDEQIAQLMQCKPLSEQEVRVLCEKAKEILMDESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDR 504
            SSHG+LD QIAQL +CK L+E EVR LCE+AK ILM+E NVQPV+ PVT+CGDIHGQF+DL ELFRIGG+ PDTNYLFMGDYVDR
Sbjct:    3 SSHGDLDRQIAQLRECKHLAEGEVRALCEQAKAILMEEWNVQPVRCPVTVCGDIHGQFYDLIELFRIGGEAPDTNYLFMGDYVDR 87

HSP 2 Score: 134.42 bits (337), Expect = 3.156e-67
Identity = 63/70 (90.00%), Postives = 66/70 (94.29%), Query Frame = 3 
Query:  507 YYSVETVTLLVSLKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANVWKIFTDLFDYFPLTALVE 716
            YYSVETV+LLV+LKVRY  RITILRGNHESRQITQVYGFYDECLRKYGNANVWK FTDLFDY PLTAL+E
Sbjct:   89 YYSVETVSLLVALKVRYRDRITILRGNHESRQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALIE 158
[Close]
BLAST of FC930988 vs. ExPASy Swiss-Prot
Match: PP2A3_ORYSI (Serine/threonine-protein phosphatase PP2A-3 catalytic subunit OS=Oryza sativa subsp. indica GN=PP2A3 PE=2 SV=2)

HSP 1 Score: 142.51 bits (358), Expect = 3.156e-67
Identity = 66/85 (77.65%), Postives = 75/85 (88.24%), Query Frame = 1 
Query:  250 SSHGNLDEQIAQLMQCKPLSEQEVRVLCEKAKEILMDESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDR 504
            SSHG+LD QIAQL +CK L+E EVR LCE+AK ILM+E NVQPV+ PVT+CGDIHGQF+DL ELFRIGG+ PDTNYLFMGDYVDR
Sbjct:    3 SSHGDLDRQIAQLRECKHLAEGEVRALCEQAKAILMEEWNVQPVRCPVTVCGDIHGQFYDLIELFRIGGEAPDTNYLFMGDYVDR 87

HSP 2 Score: 134.42 bits (337), Expect = 3.156e-67
Identity = 63/70 (90.00%), Postives = 66/70 (94.29%), Query Frame = 3 
Query:  507 YYSVETVTLLVSLKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANVWKIFTDLFDYFPLTALVE 716
            YYSVETV+LLV+LKVRY  RITILRGNHESRQITQVYGFYDECLRKYGNANVWK FTDLFDY PLTAL+E
Sbjct:   89 YYSVETVSLLVALKVRYRDRITILRGNHESRQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALIE 158
[Close]
BLAST of FC930988 vs. ExPASy Swiss-Prot
Match: PP2A2_ARATH (Serine/threonine-protein phosphatase PP2A-2 catalytic subunit OS=Arabidopsis thaliana GN=PP2A2 PE=1 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 3.441e-66
Identity = 63/84 (75.00%), Postives = 74/84 (88.10%), Query Frame = 1 
Query:  253 SHGNLDEQIAQLMQCKPLSEQEVRVLCEKAKEILMDESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDR 504
            S+G+LD QI QLM+CKPLSE +VR LC++A+ IL++E NVQPVK PVT+CGDIHGQF+DL ELFRIGG  PDTNYLFMGDYVDR
Sbjct:    3 SNGDLDRQIEQLMECKPLSEADVRTLCDQARAILVEEYNVQPVKCPVTVCGDIHGQFYDLIELFRIGGNAPDTNYLFMGDYVDR 86

HSP 2 Score: 133.65 bits (335), Expect = 3.441e-66
Identity = 62/70 (88.57%), Postives = 66/70 (94.29%), Query Frame = 3 
Query:  507 YYSVETVTLLVSLKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANVWKIFTDLFDYFPLTALVE 716
            YYSVETV+LLV+LKVRY  R+TILRGNHESRQITQVYGFYDECLRKYGNANVWK FTDLFDY PLTAL+E
Sbjct:   88 YYSVETVSLLVALKVRYRDRLTILRGNHESRQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALIE 157
[Close]
BLAST of FC930988 vs. ExPASy Swiss-Prot
Match: PP2A1_NEUCR (Serine/threonine-protein phosphatase PP2A catalytic subunit OS=Neurospora crassa GN=pph-1 PE=3 SV=3)

HSP 1 Score: 137.887 bits (346), Expect = 4.484e-66
Identity = 63/70 (90.00%), Postives = 67/70 (95.71%), Query Frame = 3 
Query:  507 YYSVETVTLLVSLKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANVWKIFTDLFDYFPLTALVE 716
            YYSVETVTLLV+LK+RYP RITILRGNHESRQITQVYGFYDECLRKYGNANVWK FTDLFDY PLTAL++
Sbjct:  109 YYSVETVTLLVALKIRYPNRITILRGNHESRQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALID 178

HSP 2 Score: 135.191 bits (339), Expect = 4.484e-66
Identity = 61/80 (76.25%), Postives = 68/80 (85.00%), Query Frame = 1 
Query:  265 LDEQIAQLMQCKPLSEQEVRVLCEKAKEILMDESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDR 504
            LD  I  LM CK L+E +V+ LCEKA+E+L DESNVQPVK PVT+CGDIHGQFHDL ELF+IGG CPDTNYLFMGDYVDR
Sbjct:   28 LDGWIESLMNCKQLAESDVQRLCEKAREVLQDESNVQPVKCPVTVCGDIHGQFHDLMELFKIGGSCPDTNYLFMGDYVDR 107
[Close]
BLAST of FC930988 vs. ExPASy Swiss-Prot
Match: PP2AB_BOVIN (Serine/threonine-protein phosphatase 2A catalytic subunit beta isoform OS=Bos taurus GN=PPP2CB PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 9.948e-66
Identity = 65/70 (92.86%), Postives = 68/70 (97.14%), Query Frame = 3 
Query:  507 YYSVETVTLLVSLKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANVWKIFTDLFDYFPLTALVE 716
            YYSVETVTLLV+LKVRYP+RITILRGNHESRQITQVYGFYDECLRKYGNANVWK FTDLFDY PLTALV+
Sbjct:   91 YYSVETVTLLVALKVRYPERITILRGNHESRQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALVD 160

HSP 2 Score: 132.494 bits (332), Expect = 9.948e-66
Identity = 60/81 (74.07%), Postives = 69/81 (85.19%), Query Frame = 1 
Query:  262 NLDEQIAQLMQCKPLSEQEVRVLCEKAKEILMDESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDR 504
            +LD+ + QL +CK L+E +VR LCEKAKEIL  ESNVQ V+ PVT+CGD+HGQFHDL ELFRIGGK PDTNYLFMGDYVDR
Sbjct:    9 DLDQWVEQLNECKQLNENQVRTLCEKAKEILTKESNVQEVRCPVTVCGDVHGQFHDLMELFRIGGKSPDTNYLFMGDYVDR 89
[Close]
BLAST of FC930988 vs. ExPASy Swiss-Prot
Match: PP2A1_ORYSJ (Serine/threonine-protein phosphatase PP2A-1 catalytic subunit OS=Oryza sativa subsp. japonica GN=PP2A1 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 9.949e-66
Identity = 65/70 (92.86%), Postives = 66/70 (94.29%), Query Frame = 3 
Query:  507 YYSVETVTLLVSLKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANVWKIFTDLFDYFPLTALVE 716
            YYSVETVTLLV+LKVRY  RITILRGNHESRQITQVYGFYDECLRKYGNANVWK FTDLFDY PLTALVE
Sbjct:   88 YYSVETVTLLVALKVRYRDRITILRGNHESRQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALVE 157

HSP 2 Score: 135.576 bits (340), Expect = 9.949e-66
Identity = 63/84 (75.00%), Postives = 71/84 (84.52%), Query Frame = 1 
Query:  253 SHGNLDEQIAQLMQCKPLSEQEVRVLCEKAKEILMDESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDR 504
            SH +LD QI+QL +CK L E EVR LCE+AK ILM+E NVQPV+ PVT+CGDIHGQF+DL ELFRIGG  PDTNYLFMGDYVDR
Sbjct:    3 SHADLDRQISQLRECKFLGEAEVRALCEQAKAILMEEWNVQPVRCPVTVCGDIHGQFYDLIELFRIGGDSPDTNYLFMGDYVDR 86
[Close]
BLAST of FC930988 vs. ExPASy Swiss-Prot
Match: PP2A1_ORYSI (Serine/threonine-protein phosphatase PP2A-1 catalytic subunit OS=Oryza sativa subsp. indica GN=PP2A1 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 9.949e-66
Identity = 65/70 (92.86%), Postives = 66/70 (94.29%), Query Frame = 3 
Query:  507 YYSVETVTLLVSLKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANVWKIFTDLFDYFPLTALVE 716
            YYSVETVTLLV+LKVRY  RITILRGNHESRQITQVYGFYDECLRKYGNANVWK FTDLFDY PLTALVE
Sbjct:   88 YYSVETVTLLVALKVRYRDRITILRGNHESRQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALVE 157

HSP 2 Score: 135.576 bits (340), Expect = 9.949e-66
Identity = 63/84 (75.00%), Postives = 71/84 (84.52%), Query Frame = 1 
Query:  253 SHGNLDEQIAQLMQCKPLSEQEVRVLCEKAKEILMDESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDR 504
            SH +LD QI+QL +CK L E EVR LCE+AK ILM+E NVQPV+ PVT+CGDIHGQF+DL ELFRIGG  PDTNYLFMGDYVDR
Sbjct:    3 SHADLDRQISQLRECKFLGEAEVRALCEQAKAILMEEWNVQPVRCPVTVCGDIHGQFYDLIELFRIGGDSPDTNYLFMGDYVDR 86
[Close]
BLAST of FC930988 vs. ExPASy Swiss-Prot
Match: PP2AB_RAT (Serine/threonine-protein phosphatase 2A catalytic subunit beta isoform OS=Rattus norvegicus GN=Ppp2cb PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.297e-65
Identity = 65/70 (92.86%), Postives = 68/70 (97.14%), Query Frame = 3 
Query:  507 YYSVETVTLLVSLKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANVWKIFTDLFDYFPLTALVE 716
            YYSVETVTLLV+LKVRYP+RITILRGNHESRQITQVYGFYDECLRKYGNANVWK FTDLFDY PLTALV+
Sbjct:   91 YYSVETVTLLVALKVRYPERITILRGNHESRQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALVD 160

HSP 2 Score: 132.109 bits (331), Expect = 1.297e-65
Identity = 60/80 (75.00%), Postives = 68/80 (85.00%), Query Frame = 1 
Query:  265 LDEQIAQLMQCKPLSEQEVRVLCEKAKEILMDESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDR 504
            LD+ + QL +CK L+E +VR LCEKAKEIL  ESNVQ V+ PVT+CGD+HGQFHDL ELFRIGGK PDTNYLFMGDYVDR
Sbjct:   10 LDQWVEQLNECKQLNENQVRTLCEKAKEILTKESNVQEVRCPVTVCGDVHGQFHDLMELFRIGGKSPDTNYLFMGDYVDR 89
[Close]
BLAST of FC930988 vs. ExPASy Swiss-Prot
Match: PP2AB_RABIT (Serine/threonine-protein phosphatase 2A catalytic subunit beta isoform OS=Oryctolagus cuniculus GN=PPP2CB PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.297e-65
Identity = 65/70 (92.86%), Postives = 68/70 (97.14%), Query Frame = 3 
Query:  507 YYSVETVTLLVSLKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANVWKIFTDLFDYFPLTALVE 716
            YYSVETVTLLV+LKVRYP+RITILRGNHESRQITQVYGFYDECLRKYGNANVWK FTDLFDY PLTALV+
Sbjct:   91 YYSVETVTLLVALKVRYPERITILRGNHESRQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALVD 160

HSP 2 Score: 132.109 bits (331), Expect = 1.297e-65
Identity = 60/80 (75.00%), Postives = 68/80 (85.00%), Query Frame = 1 
Query:  265 LDEQIAQLMQCKPLSEQEVRVLCEKAKEILMDESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDR 504
            LD+ + QL +CK L+E +VR LCEKAKEIL  ESNVQ V+ PVT+CGD+HGQFHDL ELFRIGGK PDTNYLFMGDYVDR
Sbjct:   10 LDQWVEQLNECKQLNENQVRTLCEKAKEILTKESNVQEVRCPVTVCGDVHGQFHDLMELFRIGGKSPDTNYLFMGDYVDR 89
[Close]
BLAST of FC930988 vs. ExPASy Swiss-Prot
Match: PP2AB_MOUSE (Serine/threonine-protein phosphatase 2A catalytic subunit beta isoform OS=Mus musculus GN=Ppp2cb PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.297e-65
Identity = 65/70 (92.86%), Postives = 68/70 (97.14%), Query Frame = 3 
Query:  507 YYSVETVTLLVSLKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANVWKIFTDLFDYFPLTALVE 716
            YYSVETVTLLV+LKVRYP+RITILRGNHESRQITQVYGFYDECLRKYGNANVWK FTDLFDY PLTALV+
Sbjct:   91 YYSVETVTLLVALKVRYPERITILRGNHESRQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALVD 160

HSP 2 Score: 132.109 bits (331), Expect = 1.297e-65
Identity = 60/80 (75.00%), Postives = 68/80 (85.00%), Query Frame = 1 
Query:  265 LDEQIAQLMQCKPLSEQEVRVLCEKAKEILMDESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDR 504
            LD+ + QL +CK L+E +VR LCEKAKEIL  ESNVQ V+ PVT+CGD+HGQFHDL ELFRIGGK PDTNYLFMGDYVDR
Sbjct:   10 LDQWVEQLNECKQLNENQVRTLCEKAKEILTKESNVQEVRCPVTVCGDVHGQFHDLMELFRIGGKSPDTNYLFMGDYVDR 89
The following BLAST results are available for this feature:
BLAST of FC930988 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 190
Match NameE-valueIdentityDescription
PP2A3_ORYSJ3.156e-6777.65Serine/threonine-protein phosphatase PP2A-3 cataly... [more]
PP2A3_ORYSI3.156e-6777.65Serine/threonine-protein phosphatase PP2A-3 cataly... [more]
PP2A2_ARATH3.441e-6675.00Serine/threonine-protein phosphatase PP2A-2 cataly... [more]
PP2A1_NEUCR4.484e-6690.00Serine/threonine-protein phosphatase PP2A catalyti... [more]
PP2AB_BOVIN9.948e-6692.86Serine/threonine-protein phosphatase 2A catalytic ... [more]
PP2A1_ORYSJ9.949e-6692.86Serine/threonine-protein phosphatase PP2A-1 cataly... [more]
PP2A1_ORYSI9.949e-6692.86Serine/threonine-protein phosphatase PP2A-1 cataly... [more]
PP2AB_RAT1.297e-6592.86Serine/threonine-protein phosphatase 2A catalytic ... [more]
PP2AB_RABIT1.297e-6592.86Serine/threonine-protein phosphatase 2A catalytic ... [more]
PP2AB_MOUSE1.297e-6592.86Serine/threonine-protein phosphatase 2A catalytic ... [more]

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Properties
Property NameValue
Genbank descriptionC34100B11EF PostHarvP1 Citrus clementina cDNA clone C34100B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930988 ID=FC930988; Name=FC930988; organism=Citrus clementina; type=EST; length=717bp
GAAAATGTTTGTTATTTTAGCCCATTTCTCTCTCTCTCTCTAAACACTGA
AGCCTTCTCTCTTTTTTTTTTTAAAATTTTTTTTTGAGATACAAAATTGA
ATTTTGATTATAGGGTTTCGAAAAAAATTAGGGTTTGTTTGTTGAAATTT
AGGGTTAGGGTTAGATTAAAAAGAGGAAAGTGAAGGGATCTGAGTCTGCA
AATTAAGAAGAAGAAGGACAAGAAAATGAGCTTGGATTCGGTCCCTTCAA
GTTCACATGGAAATCTCGACGAGCAGATTGCTCAGCTTATGCAGTGCAAG
CCCTTATCGGAACAAGAGGTTAGAGTGTTATGCGAAAAGGCCAAGGAGAT
ATTGATGGATGAAAGTAATGTCCAGCCTGTAAAAAGTCCTGTTACAATTT
GTGGTGATATTCATGGACAATTTCATGATCTTGCAGAGCTTTTCCGCATT
GGAGGAAAGTGTCCAGATACAAACTACTTGTTCATGGGAGATTATGTTGA
CCGTGTTACTATTCAGTAGAAACTGTTACGCTTTTGGTATCTCTGAAAGT
GCGTTATCCTCAAAGGATTACTATTCTAAGGGGGAATCATGAAAGTCGTC
AGATTACTCAGGTCTATGGATTCTATGATGAGTGCCTTAGGAAGTACGGC
AATGCAAATGTTTGGAAGATATTCACAGATTTATTTGACTATTTTCCACT
GACAGCATTGGTTGAAT
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