FC930988

Overview
NameFC930988
Unique NameFC930988
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length717
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930988 vs. ExPASy Swiss-Prot
Match: PP2AB_HUMAN (Serine/threonine-protein phosphatase 2A catalytic subunit beta isoform OS=Homo sapiens GN=PPP2CB PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.297e-65
Identity = 65/70 (92.86%), Postives = 68/70 (97.14%), Query Frame = 3
Query:  507 YYSVETVTLLVSLKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANVWKIFTDLFDYFPLTALVE 716
            YYSVETVTLLV+LKVRYP+RITILRGNHESRQITQVYGFYDECLRKYGNANVWK FTDLFDY PLTALV+
Sbjct:   91 YYSVETVTLLVALKVRYPERITILRGNHESRQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALVD 160          

HSP 2 Score: 132.109 bits (331), Expect = 1.297e-65
Identity = 60/80 (75.00%), Postives = 68/80 (85.00%), Query Frame = 1
Query:  265 LDEQIAQLMQCKPLSEQEVRVLCEKAKEILMDESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDR 504
            LD+ + QL +CK L+E +VR LCEKAKEIL  ESNVQ V+ PVT+CGD+HGQFHDL ELFRIGGK PDTNYLFMGDYVDR
Sbjct:   10 LDQWVEQLNECKQLNENQVRTLCEKAKEILTKESNVQEVRCPVTVCGDVHGQFHDLMELFRIGGKSPDTNYLFMGDYVDR 89          
BLAST of FC930988 vs. ExPASy Swiss-Prot
Match: PP2A1_ARATH (Serine/threonine-protein phosphatase PP2A-1 catalytic subunit OS=Arabidopsis thaliana GN=PP2A1 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 1.297e-65
Identity = 61/83 (73.49%), Postives = 73/83 (87.95%), Query Frame = 1
Query:  256 HGNLDEQIAQLMQCKPLSEQEVRVLCEKAKEILMDESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDR 504
            +G+LD QI QLM+CKPL E +V++LC++AK IL++E NVQPVK PVT+CGDIHGQF+DL ELFRIGG  PDTNYLFMGDYVDR
Sbjct:    4 NGDLDRQIEQLMECKPLGEADVKILCDQAKAILVEEYNVQPVKCPVTVCGDIHGQFYDLIELFRIGGNAPDTNYLFMGDYVDR 86          

HSP 2 Score: 133.65 bits (335), Expect = 1.297e-65
Identity = 62/70 (88.57%), Postives = 66/70 (94.29%), Query Frame = 3
Query:  507 YYSVETVTLLVSLKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANVWKIFTDLFDYFPLTALVE 716
            YYSVETV+LLV+LKVRY  R+TILRGNHESRQITQVYGFYDECLRKYGNANVWK FTDLFDY PLTAL+E
Sbjct:   88 YYSVETVSLLVALKVRYRDRLTILRGNHESRQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALIE 157          
BLAST of FC930988 vs. ExPASy Swiss-Prot
Match: PP2AA_CHICK (Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform OS=Gallus gallus GN=PPP2CA PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.692e-65
Identity = 65/70 (92.86%), Postives = 68/70 (97.14%), Query Frame = 3
Query:  507 YYSVETVTLLVSLKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANVWKIFTDLFDYFPLTALVE 716
            YYSVETVTLLV+LKVRYP+RITILRGNHESRQITQVYGFYDECLRKYGNANVWK FTDLFDY PLTALV+
Sbjct:   91 YYSVETVTLLVALKVRYPERITILRGNHESRQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALVD 160          

HSP 2 Score: 131.724 bits (330), Expect = 1.692e-65
Identity = 61/80 (76.25%), Postives = 68/80 (85.00%), Query Frame = 1
Query:  265 LDEQIAQLMQCKPLSEQEVRVLCEKAKEILMDESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDR 504
            LD+ I QL +C+ LSE +VR LCEKAKEIL  ESNVQ V+ PVT+CGD+HGQFHDL ELFRIGGK PDTNYLFMGDYVDR
Sbjct:   10 LDQWIEQLNECRQLSESQVRSLCEKAKEILTKESNVQEVRCPVTVCGDVHGQFHDLMELFRIGGKSPDTNYLFMGDYVDR 89          
BLAST of FC930988 vs. ExPASy Swiss-Prot
Match: PP2AA_DICDI (Serine/threonine-protein phosphatase 2A catalytic subunit A OS=Dictyostelium discoideum GN=pho2A PE=1 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 2.206e-65
Identity = 62/81 (76.54%), Postives = 71/81 (87.65%), Query Frame = 1
Query:  262 NLDEQIAQLMQCKPLSEQEVRVLCEKAKEILMDESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDR 504
            ++D+ I+ L +CKPLSE EVR LCEKA+EIL  ESNVQPV+ PVT+CGDIHGQFHDL ELF+IGG CPDTNYLFMGDYVDR
Sbjct:    6 DVDKYISILKECKPLSESEVRDLCEKAREILSKESNVQPVRCPVTVCGDIHGQFHDLMELFKIGGNCPDTNYLFMGDYVDR 86          

HSP 2 Score: 133.65 bits (335), Expect = 2.206e-65
Identity = 61/70 (87.14%), Postives = 66/70 (94.29%), Query Frame = 3
Query:  507 YYSVETVTLLVSLKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANVWKIFTDLFDYFPLTALVE 716
            +YSVETVTLLV+LKVRY  R+TILRGNHESRQITQVYGFYDECLRKYGN NVWK+FTDLFDY PLTAL+E
Sbjct:   88 FYSVETVTLLVALKVRYKDRVTILRGNHESRQITQVYGFYDECLRKYGNPNVWKLFTDLFDYLPLTALIE 157          
BLAST of FC930988 vs. ExPASy Swiss-Prot
Match: PP2A1_EMENI (Serine/threonine-protein phosphatase PP2A catalytic subunit OS=Emericella nidulans GN=pphA PE=3 SV=2)

HSP 1 Score: 140.198 bits (352), Expect = 4.888e-65
Identity = 65/70 (92.86%), Postives = 67/70 (95.71%), Query Frame = 3
Query:  507 YYSVETVTLLVSLKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANVWKIFTDLFDYFPLTALVE 716
            YYSVETVTLLV LK+RYPQRITILRGNHESRQITQVYGFYDECLRKYGNANVWK FTDLFDY PLTAL+E
Sbjct:  111 YYSVETVTLLVCLKIRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALIE 180          

HSP 2 Score: 129.413 bits (324), Expect = 4.888e-65
Identity = 59/80 (73.75%), Postives = 68/80 (85.00%), Query Frame = 1
Query:  265 LDEQIAQLMQCKPLSEQEVRVLCEKAKEILMDESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDR 504
            LD  I  LM CK L+E++VR LC++A+E+L +ESNVQPVK PVT+CGDIHGQFHDL ELFRIGG  PDTNYLFMGDYVDR
Sbjct:   30 LDGWIESLMTCKQLAEEDVRRLCDRAREVLQEESNVQPVKCPVTVCGDIHGQFHDLMELFRIGGPNPDTNYLFMGDYVDR 109          
BLAST of FC930988 vs. ExPASy Swiss-Prot
Match: PP2A_HEVBR (Serine/threonine-protein phosphatase PP2A catalytic subunit OS=Hevea brasiliensis GN=PP2A PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 6.378e-65
Identity = 64/70 (91.43%), Postives = 66/70 (94.29%), Query Frame = 3
Query:  507 YYSVETVTLLVSLKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANVWKIFTDLFDYFPLTALVE 716
            YYSVETVTLLV+LKVRY  RITILRGNHESRQITQVYGFYDECLRKYGNANVWK FTDLFDY PLTAL+E
Sbjct:   88 YYSVETVTLLVALKVRYRDRITILRGNHESRQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALIE 157          

HSP 2 Score: 133.265 bits (334), Expect = 6.378e-65
Identity = 60/84 (71.43%), Postives = 70/84 (83.33%), Query Frame = 1
Query:  253 SHGNLDEQIAQLMQCKPLSEQEVRVLCEKAKEILMDESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDR 504
            SHG+LD QI  LM+CKPL E   + LC++A+ IL++E NVQPVK PVT+CGDIHGQF+DL ELFRIGG  PDTNYLFMGDYVDR
Sbjct:    3 SHGDLDRQIEHLMECKPLPEARGQTLCDQARAILVEEWNVQPVKCPVTVCGDIHGQFYDLIELFRIGGNAPDTNYLFMGDYVDR 86          
BLAST of FC930988 vs. ExPASy Swiss-Prot
Match: PP2A5_ARATH (Serine/threonine-protein phosphatase PP2A-5 catalytic subunit OS=Arabidopsis thaliana GN=PP2A5 PE=1 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.085e-64
Identity = 62/82 (75.61%), Postives = 71/82 (86.59%), Query Frame = 1
Query:  259 GNLDEQIAQLMQCKPLSEQEVRVLCEKAKEILMDESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDR 504
            G++D QI QLM+CK LSE EV++LCE AK IL++E NVQPVK PVT+CGDIHGQF+DL ELFRIGG  PDTNYLFMGDYVDR
Sbjct:    6 GDIDRQIEQLMECKALSETEVKMLCEHAKTILVEEYNVQPVKCPVTVCGDIHGQFYDLIELFRIGGSSPDTNYLFMGDYVDR 87          

HSP 2 Score: 132.88 bits (333), Expect = 1.085e-64
Identity = 62/70 (88.57%), Postives = 66/70 (94.29%), Query Frame = 3
Query:  507 YYSVETVTLLVSLKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANVWKIFTDLFDYFPLTALVE 716
            YYSVETV+LLV+LKVRY  R+TILRGNHESRQITQVYGFYDECLRKYGNANVWK FTDLFDY PLTAL+E
Sbjct:   89 YYSVETVSLLVALKVRYRDRLTILRGNHESRQITQVYGFYDECLRKYGNANVWKHFTDLFDYLPLTALIE 158          
BLAST of FC930988 vs. ExPASy Swiss-Prot
Match: PP2AA_RAT (Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform OS=Rattus norvegicus GN=Ppp2ca PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.844e-64
Identity = 64/70 (91.43%), Postives = 67/70 (95.71%), Query Frame = 3
Query:  507 YYSVETVTLLVSLKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANVWKIFTDLFDYFPLTALVE 716
            YYSVETVTLLV+LKVRY +RITILRGNHESRQITQVYGFYDECLRKYGNANVWK FTDLFDY PLTALV+
Sbjct:   91 YYSVETVTLLVALKVRYRERITILRGNHESRQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALVD 160          

HSP 2 Score: 131.724 bits (330), Expect = 1.844e-64
Identity = 61/80 (76.25%), Postives = 68/80 (85.00%), Query Frame = 1
Query:  265 LDEQIAQLMQCKPLSEQEVRVLCEKAKEILMDESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDR 504
            LD+ I QL +CK LSE +V+ LCEKAKEIL  ESNVQ V+ PVT+CGD+HGQFHDL ELFRIGGK PDTNYLFMGDYVDR
Sbjct:   10 LDQWIEQLNECKQLSESQVKSLCEKAKEILTKESNVQEVRCPVTVCGDVHGQFHDLMELFRIGGKSPDTNYLFMGDYVDR 89          
BLAST of FC930988 vs. ExPASy Swiss-Prot
Match: PP2AA_RABIT (Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform OS=Oryctolagus cuniculus GN=PPP2CA PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.844e-64
Identity = 64/70 (91.43%), Postives = 67/70 (95.71%), Query Frame = 3
Query:  507 YYSVETVTLLVSLKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANVWKIFTDLFDYFPLTALVE 716
            YYSVETVTLLV+LKVRY +RITILRGNHESRQITQVYGFYDECLRKYGNANVWK FTDLFDY PLTALV+
Sbjct:   91 YYSVETVTLLVALKVRYRERITILRGNHESRQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALVD 160          

HSP 2 Score: 131.724 bits (330), Expect = 1.844e-64
Identity = 61/80 (76.25%), Postives = 68/80 (85.00%), Query Frame = 1
Query:  265 LDEQIAQLMQCKPLSEQEVRVLCEKAKEILMDESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDR 504
            LD+ I QL +CK LSE +V+ LCEKAKEIL  ESNVQ V+ PVT+CGD+HGQFHDL ELFRIGGK PDTNYLFMGDYVDR
Sbjct:   10 LDQWIEQLNECKQLSESQVKSLCEKAKEILTKESNVQEVRCPVTVCGDVHGQFHDLMELFRIGGKSPDTNYLFMGDYVDR 89          
BLAST of FC930988 vs. ExPASy Swiss-Prot
Match: PP2AA_PIG (Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform OS=Sus scrofa GN=PPP2CA PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.844e-64
Identity = 64/70 (91.43%), Postives = 67/70 (95.71%), Query Frame = 3
Query:  507 YYSVETVTLLVSLKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANVWKIFTDLFDYFPLTALVE 716
            YYSVETVTLLV+LKVRY +RITILRGNHESRQITQVYGFYDECLRKYGNANVWK FTDLFDY PLTALV+
Sbjct:   91 YYSVETVTLLVALKVRYRERITILRGNHESRQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALVD 160          

HSP 2 Score: 131.724 bits (330), Expect = 1.844e-64
Identity = 61/80 (76.25%), Postives = 68/80 (85.00%), Query Frame = 1
Query:  265 LDEQIAQLMQCKPLSEQEVRVLCEKAKEILMDESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDR 504
            LD+ I QL +CK LSE +V+ LCEKAKEIL  ESNVQ V+ PVT+CGD+HGQFHDL ELFRIGGK PDTNYLFMGDYVDR
Sbjct:   10 LDQWIEQLNECKQLSESQVKSLCEKAKEILTKESNVQEVRCPVTVCGDVHGQFHDLMELFRIGGKSPDTNYLFMGDYVDR 89          
The following BLAST results are available for this feature:
BLAST of FC930988 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 190
Match NameE-valueIdentityDescription
PP2AB_HUMAN1.297e-6592.86Serine/threonine-protein phosphatase 2A catalytic ... [more]
PP2A1_ARATH1.297e-6573.49Serine/threonine-protein phosphatase PP2A-1 cataly... [more]
PP2AA_CHICK1.692e-6592.86Serine/threonine-protein phosphatase 2A catalytic ... [more]
PP2AA_DICDI2.206e-6576.54Serine/threonine-protein phosphatase 2A catalytic ... [more]
PP2A1_EMENI4.888e-6592.86Serine/threonine-protein phosphatase PP2A catalyti... [more]
PP2A_HEVBR6.378e-6591.43Serine/threonine-protein phosphatase PP2A catalyti... [more]
PP2A5_ARATH1.085e-6475.61Serine/threonine-protein phosphatase PP2A-5 cataly... [more]
PP2AA_RAT1.844e-6491.43Serine/threonine-protein phosphatase 2A catalytic ... [more]
PP2AA_RABIT1.844e-6491.43Serine/threonine-protein phosphatase 2A catalytic ... [more]
PP2AA_PIG1.844e-6491.43Serine/threonine-protein phosphatase 2A catalytic ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34100B11EF PostHarvP1 Citrus clementina cDNA clone C34100B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930988 ID=FC930988; Name=FC930988; organism=Citrus clementina; type=EST; length=717bp
GAAAATGTTTGTTATTTTAGCCCATTTCTCTCTCTCTCTCTAAACACTGA
AGCCTTCTCTCTTTTTTTTTTTAAAATTTTTTTTTGAGATACAAAATTGA
ATTTTGATTATAGGGTTTCGAAAAAAATTAGGGTTTGTTTGTTGAAATTT
AGGGTTAGGGTTAGATTAAAAAGAGGAAAGTGAAGGGATCTGAGTCTGCA
AATTAAGAAGAAGAAGGACAAGAAAATGAGCTTGGATTCGGTCCCTTCAA
GTTCACATGGAAATCTCGACGAGCAGATTGCTCAGCTTATGCAGTGCAAG
CCCTTATCGGAACAAGAGGTTAGAGTGTTATGCGAAAAGGCCAAGGAGAT
ATTGATGGATGAAAGTAATGTCCAGCCTGTAAAAAGTCCTGTTACAATTT
GTGGTGATATTCATGGACAATTTCATGATCTTGCAGAGCTTTTCCGCATT
GGAGGAAAGTGTCCAGATACAAACTACTTGTTCATGGGAGATTATGTTGA
CCGTGTTACTATTCAGTAGAAACTGTTACGCTTTTGGTATCTCTGAAAGT
GCGTTATCCTCAAAGGATTACTATTCTAAGGGGGAATCATGAAAGTCGTC
AGATTACTCAGGTCTATGGATTCTATGATGAGTGCCTTAGGAAGTACGGC
AATGCAAATGTTTGGAAGATATTCACAGATTTATTTGACTATTTTCCACT
GACAGCATTGGTTGAAT
back to top