FC930988 | Citrus Genome Database

Overview


Name	FC930988
Unique Name	FC930988
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	717

Libraries


Library Name	Type
PostHarvP1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
FC930988_ssr27	microsatellite	FC930988_ssr27:27..40.	BLAST: Citrus ESTs to Prunus persica proteins V1
FC930988_ssr205	microsatellite	FC930988_ssr205:205..216.	BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15248	contig	Ccv1_Contig15248:1..719.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of FC930988 vs. ExPASy Swiss-Prot
Match: PP2AA_MOUSE (Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform OS=Mus musculus GN=Ppp2ca PE=1 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.844e-64
Identity = 64/70 (91.43%), Postives = 67/70 (95.71%), Query Frame = 3

Query:  507 YYSVETVTLLVSLKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANVWKIFTDLFDYFPLTALVE 716
            YYSVETVTLLV+LKVRY +RITILRGNHESRQITQVYGFYDECLRKYGNANVWK FTDLFDY PLTALV+
Sbjct:   91 YYSVETVTLLVALKVRYRERITILRGNHESRQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALVD 160

HSP 2 Score: 131.724 bits (330), Expect = 1.844e-64
Identity = 61/80 (76.25%), Postives = 68/80 (85.00%), Query Frame = 1

Query:  265 LDEQIAQLMQCKPLSEQEVRVLCEKAKEILMDESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDR 504
            LD+ I QL +CK LSE +V+ LCEKAKEIL  ESNVQ V+ PVT+CGD+HGQFHDL ELFRIGGK PDTNYLFMGDYVDR
Sbjct:   10 LDQWIEQLNECKQLSESQVKSLCEKAKEILTKESNVQEVRCPVTVCGDVHGQFHDLMELFRIGGKSPDTNYLFMGDYVDR 89

[Close]

BLAST of FC930988 vs. ExPASy Swiss-Prot
Match: PP2AA_HUMAN (Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform OS=Homo sapiens GN=PPP2CA PE=1 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.844e-64
Identity = 64/70 (91.43%), Postives = 67/70 (95.71%), Query Frame = 3

Query:  507 YYSVETVTLLVSLKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANVWKIFTDLFDYFPLTALVE 716
            YYSVETVTLLV+LKVRY +RITILRGNHESRQITQVYGFYDECLRKYGNANVWK FTDLFDY PLTALV+
Sbjct:   91 YYSVETVTLLVALKVRYRERITILRGNHESRQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALVD 160

HSP 2 Score: 131.724 bits (330), Expect = 1.844e-64
Identity = 61/80 (76.25%), Postives = 68/80 (85.00%), Query Frame = 1

Query:  265 LDEQIAQLMQCKPLSEQEVRVLCEKAKEILMDESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDR 504
            LD+ I QL +CK LSE +V+ LCEKAKEIL  ESNVQ V+ PVT+CGD+HGQFHDL ELFRIGGK PDTNYLFMGDYVDR
Sbjct:   10 LDQWIEQLNECKQLSESQVKSLCEKAKEILTKESNVQEVRCPVTVCGDVHGQFHDLMELFRIGGKSPDTNYLFMGDYVDR 89

[Close]

BLAST of FC930988 vs. ExPASy Swiss-Prot
Match: PP2AA_BOVIN (Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform OS=Bos taurus GN=PPP2CA PE=1 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.844e-64
Identity = 64/70 (91.43%), Postives = 67/70 (95.71%), Query Frame = 3

Query:  507 YYSVETVTLLVSLKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANVWKIFTDLFDYFPLTALVE 716
            YYSVETVTLLV+LKVRY +RITILRGNHESRQITQVYGFYDECLRKYGNANVWK FTDLFDY PLTALV+
Sbjct:   91 YYSVETVTLLVALKVRYRERITILRGNHESRQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALVD 160

HSP 2 Score: 131.724 bits (330), Expect = 1.844e-64
Identity = 61/80 (76.25%), Postives = 68/80 (85.00%), Query Frame = 1

Query:  265 LDEQIAQLMQCKPLSEQEVRVLCEKAKEILMDESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDR 504
            LD+ I QL +CK LSE +V+ LCEKAKEIL  ESNVQ V+ PVT+CGD+HGQFHDL ELFRIGGK PDTNYLFMGDYVDR
Sbjct:   10 LDQWIEQLNECKQLSESQVKSLCEKAKEILTKESNVQEVRCPVTVCGDVHGQFHDLMELFRIGGKSPDTNYLFMGDYVDR 89

[Close]

BLAST of FC930988 vs. ExPASy Swiss-Prot
Match: PP2A_DROME (Serine/threonine-protein phosphatase PP2A OS=Drosophila melanogaster GN=mts PE=1 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 4.088e-64
Identity = 64/70 (91.43%), Postives = 67/70 (95.71%), Query Frame = 3

Query:  507 YYSVETVTLLVSLKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANVWKIFTDLFDYFPLTALVE 716
            YYSVETVTLLV+LKVRY +RITILRGNHESRQITQVYGFYDECLRKYGNANVWK FTDLFDY PLTALV+
Sbjct:   91 YYSVETVTLLVALKVRYRERITILRGNHESRQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALVD 160

HSP 2 Score: 130.568 bits (327), Expect = 4.088e-64
Identity = 60/81 (74.07%), Postives = 68/81 (83.95%), Query Frame = 1

Query:  262 NLDEQIAQLMQCKPLSEQEVRVLCEKAKEILMDESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDR 504
            +LD+ I QL +C  L+E +VR LC+KAKEIL  ESNVQ VK PVT+CGD+HGQFHDL ELFRIGGK PDTNYLFMGDYVDR
Sbjct:    9 DLDQWIEQLNECNQLTETQVRTLCDKAKEILSKESNVQEVKCPVTVCGDVHGQFHDLMELFRIGGKSPDTNYLFMGDYVDR 89

[Close]

BLAST of FC930988 vs. ExPASy Swiss-Prot
Match: PP2A_ACECL (Serine/threonine-protein phosphatase PP2A-1 catalytic subunit OS=Acetabularia cliftonii PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 1.182e-63
Identity = 62/70 (88.57%), Postives = 67/70 (95.71%), Query Frame = 3

Query:  507 YYSVETVTLLVSLKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANVWKIFTDLFDYFPLTALVE 716
            Y SVETVTLLVSLKVRYP+RITILRGNHESRQITQVYGFYDECLRKYGNANVW++FTDLFD+ PLT L+E
Sbjct:   88 YNSVETVTLLVSLKVRYPERITILRGNHESRQITQVYGFYDECLRKYGNANVWQLFTDLFDFLPLTGLIE 157

HSP 2 Score: 130.568 bits (327), Expect = 1.182e-63
Identity = 58/80 (72.50%), Postives = 66/80 (82.50%), Query Frame = 1

Query:  265 LDEQIAQLMQCKPLSEQEVRVLCEKAKEILMDESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDR 504
            LDE I  LMQCKPL E+ V+ L  KA+E+  +E NVQPVK PVT+CGDIHGQFHD+ ELF+IGG CPDTNYLFMGDYVDR
Sbjct:    7 LDEWIEHLMQCKPLPEENVKELVAKAREVFSNEKNVQPVKMPVTVCGDIHGQFHDMVELFKIGGTCPDTNYLFMGDYVDR 86

[Close]

BLAST of FC930988 vs. ExPASy Swiss-Prot
Match: PP2A_HELAN (Serine/threonine-protein phosphatase PP2A catalytic subunit OS=Helianthus annuus PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.182e-63
Identity = 63/70 (90.00%), Postives = 66/70 (94.29%), Query Frame = 3

Query:  507 YYSVETVTLLVSLKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANVWKIFTDLFDYFPLTALVE 716
            YYSVETVTLLV+LKVRY  RITILRGNHESRQITQVYGF+DECLRKYGNANVWK FTDLFDY PLTAL+E
Sbjct:   87 YYSVETVTLLVALKVRYRDRITILRGNHESRQITQVYGFFDECLRKYGNANVWKHFTDLFDYLPLTALIE 156

HSP 2 Score: 131.339 bits (329), Expect = 1.182e-63
Identity = 62/84 (73.81%), Postives = 69/84 (82.14%), Query Frame = 1

Query:  253 SHGNLDEQIAQLMQCKPLSEQEVRVLCEKAKEILMDESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDR 504
            S  +LD QI  LM CKPL E EVR LC++A+ IL++E NVQPVK PVT+CGDIHGQFHDL ELFRIGG  PDTNYLFMGDYVDR
Sbjct:    3 SQSDLDRQIEHLMDCKPLPE-EVRTLCDQARTILVEEWNVQPVKCPVTVCGDIHGQFHDLLELFRIGGSAPDTNYLFMGDYVDR 85

[Close]

BLAST of FC930988 vs. ExPASy Swiss-Prot
Match: PP2AB_PIG (Serine/threonine-protein phosphatase 2A catalytic subunit beta isoform (Fragment) OS=Sus scrofa GN=PPP2CB PE=2 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 1.183e-63
Identity = 65/70 (92.86%), Postives = 68/70 (97.14%), Query Frame = 3

Query:  507 YYSVETVTLLVSLKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANVWKIFTDLFDYFPLTALVE 716
            YYSVETVTLLV+LKVRYP+RITILRGNHESRQITQVYGFYDECLRKYGNANVWK FTDLFDY PLTALV+
Sbjct:   75 YYSVETVTLLVALKVRYPERITILRGNHESRQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALVD 144

HSP 2 Score: 125.561 bits (314), Expect = 1.183e-63
Identity = 57/73 (78.08%), Postives = 63/73 (86.30%), Query Frame = 1

Query:  286 LMQCKPLSEQEVRVLCEKAKEILMDESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDR 504
            L +CK L+E +VR LCEKAKEIL  ESNVQ V+ PVT+CGD+HGQFHDL ELFRIGGK PDTNYLFMGDYVDR
Sbjct:    1 LNECKQLNENQVRTLCEKAKEILTKESNVQEVRCPVTVCGDVHGQFHDLMELFRIGGKSPDTNYLFMGDYVDR 73

[Close]

BLAST of FC930988 vs. ExPASy Swiss-Prot
Match: PP2A2_ERYGR (Serine/threonine-protein phosphatase PP2A-2 catalytic subunit OS=Erysiphe graminis subsp. hordei GN=PP2A-2 PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 3.415e-63
Identity = 63/70 (90.00%), Postives = 68/70 (97.14%), Query Frame = 3

Query:  507 YYSVETVTLLVSLKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANVWKIFTDLFDYFPLTALVE 716
            YYSVETVTLLV+LK+RYPQRITILRGNHESRQITQVYGFYDECLRKYGNANVWK FT+LFD+ PLTAL+E
Sbjct:  110 YYSVETVTLLVALKIRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANVWKYFTNLFDFLPLTALIE 179

HSP 2 Score: 125.946 bits (315), Expect = 3.415e-63
Identity = 61/85 (71.76%), Postives = 66/85 (77.65%), Query Frame = 1

Query:  250 SSHGNLDEQIAQLMQCKPLSEQEVRVLCEKAKEILMDESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDR 504
            +S   LD  I  LM CK L E +V  LCEKA+E+L  ESNVQPVK PVT+CGDIHGQFHDL ELFRIGG  PDTNYLFMGDYVDR
Sbjct:   24 ASISTLDGWIENLMACKQLPEVDVLRLCEKAREVLHSESNVQPVKCPVTVCGDIHGQFHDLMELFRIGGPNPDTNYLFMGDYVDR 108

[Close]

BLAST of FC930988 vs. ExPASy Swiss-Prot
Match: PP2A2_SCHPO (Major serine/threonine-protein phosphatase PP2A-2 catalytic subunit OS=Schizosaccharomyces pombe GN=ppa2 PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 2.189e-62
Identity = 60/70 (85.71%), Postives = 68/70 (97.14%), Query Frame = 3

Query:  507 YYSVETVTLLVSLKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANVWKIFTDLFDYFPLTALVE 716
            Y+SVETV+LLV++K+RYP RITILRGNHESRQITQVYGFYDECLRKYG+ANVWK FT+LFDYFPLTAL+E
Sbjct:  104 YHSVETVSLLVAMKLRYPNRITILRGNHESRQITQVYGFYDECLRKYGSANVWKHFTNLFDYFPLTALIE 173

HSP 2 Score: 129.028 bits (323), Expect = 2.189e-62
Identity = 56/82 (68.29%), Postives = 70/82 (85.37%), Query Frame = 1

Query:  259 GNLDEQIAQLMQCKPLSEQEVRVLCEKAKEILMDESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDR 504
            G++D  I QL +C+PLSE +V +LC+KA+E+L  E+NVQPV++PVT+CGDIHGQFHDL ELF+IGG  PD NYLFMGDYVDR
Sbjct:   21 GDVDRWIEQLKKCEPLSEADVEMLCDKAREVLCQENNVQPVRNPVTVCGDIHGQFHDLMELFKIGGDVPDMNYLFMGDYVDR 102

[Close]

BLAST of FC930988 vs. ExPASy Swiss-Prot
Match: PP2A1_SCHPO (Minor serine/threonine-protein phosphatase PP2A-1 catalytic subunit OS=Schizosaccharomyces pombe GN=ppa1 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 2.385e-61
Identity = 60/70 (85.71%), Postives = 67/70 (95.71%), Query Frame = 3

Query:  507 YYSVETVTLLVSLKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANVWKIFTDLFDYFPLTALVE 716
            Y+SVETV+LL++ K+RYPQRITILRGNHESRQITQVYGFYDECLRKYGNANVW+ FTDLFDY PLTAL+E
Sbjct:   91 YHSVETVSLLIAFKIRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANVWQYFTDLFDYLPLTALIE 160

HSP 2 Score: 123.25 bits (308), Expect = 2.385e-61
Identity = 57/86 (66.28%), Postives = 67/86 (77.91%), Query Frame = 1

Query:  247 SSSHGNLDEQIAQLMQCKPLSEQEVRVLCEKAKEILMDESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDR 504
            S   G +D  I QL +C+PLSE++V  +C+ AKE+L  ESNVQ V+ PVT+CGDIHGQFHDL ELF IGG  PDTNYLFMGDYVDR
Sbjct:    4 SGKIGEVDRWIEQLSRCEPLSEEDVIQMCDLAKEVLSVESNVQSVRCPVTVCGDIHGQFHDLMELFNIGGPSPDTNYLFMGDYVDR 89

The following BLAST results are available for this feature:

BLAST of FC930988 vs. ExPASy Swiss-Prot

BLAST of FC930988 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 190


Match Name	E-value	Identity	Description
PP2AA_MOUSE	1.844e-64	91.43	Serine/threonine-protein phosphatase 2A catalytic ...	[more]
PP2AA_HUMAN	1.844e-64	91.43	Serine/threonine-protein phosphatase 2A catalytic ...	[more]
PP2AA_BOVIN	1.844e-64	91.43	Serine/threonine-protein phosphatase 2A catalytic ...	[more]
PP2A_DROME	4.088e-64	91.43	Serine/threonine-protein phosphatase PP2A OS=Droso...	[more]
PP2A_ACECL	1.182e-63	88.57	Serine/threonine-protein phosphatase PP2A-1 cataly...	[more]
PP2A_HELAN	1.182e-63	90.00	Serine/threonine-protein phosphatase PP2A catalyti...	[more]
PP2AB_PIG	1.183e-63	92.86	Serine/threonine-protein phosphatase 2A catalytic ...	[more]
PP2A2_ERYGR	3.415e-63	90.00	Serine/threonine-protein phosphatase PP2A-2 cataly...	[more]
PP2A2_SCHPO	2.189e-62	85.71	Major serine/threonine-protein phosphatase PP2A-2 ...	[more]
PP2A1_SCHPO	2.385e-61	85.71	Minor serine/threonine-protein phosphatase PP2A-1 ...	[more]

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Properties


Property Name	Value
Genbank description	C34100B11EF PostHarvP1 Citrus clementina cDNA clone C34100B11, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC930988 ID=FC930988; Name=FC930988; organism=Citrus clementina; type=EST; length=717bp
GAAAATGTTTGTTATTTTAGCCCATTTCTCTCTCTCTCTCTAAACACTGA
AGCCTTCTCTCTTTTTTTTTTTAAAATTTTTTTTTGAGATACAAAATTGA
ATTTTGATTATAGGGTTTCGAAAAAAATTAGGGTTTGTTTGTTGAAATTT
AGGGTTAGGGTTAGATTAAAAAGAGGAAAGTGAAGGGATCTGAGTCTGCA
AATTAAGAAGAAGAAGGACAAGAAAATGAGCTTGGATTCGGTCCCTTCAA
GTTCACATGGAAATCTCGACGAGCAGATTGCTCAGCTTATGCAGTGCAAG
CCCTTATCGGAACAAGAGGTTAGAGTGTTATGCGAAAAGGCCAAGGAGAT
ATTGATGGATGAAAGTAATGTCCAGCCTGTAAAAAGTCCTGTTACAATTT
GTGGTGATATTCATGGACAATTTCATGATCTTGCAGAGCTTTTCCGCATT
GGAGGAAAGTGTCCAGATACAAACTACTTGTTCATGGGAGATTATGTTGA
CCGTGTTACTATTCAGTAGAAACTGTTACGCTTTTGGTATCTCTGAAAGT
GCGTTATCCTCAAAGGATTACTATTCTAAGGGGGAATCATGAAAGTCGTC
AGATTACTCAGGTCTATGGATTCTATGATGAGTGCCTTAGGAAGTACGGC
AATGCAAATGTTTGGAAGATATTCACAGATTTATTTGACTATTTTCCACT
GACAGCATTGGTTGAAT