FC930988

Overview
NameFC930988
Unique NameFC930988
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length717
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930988_ssr27 microsatellite FC930988_ssr27:27..40. BLAST: Citrus ESTs to Prunus persica proteins V1
FC930988_ssr205 microsatellite FC930988_ssr205:205..216. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15248 contig Ccv1_Contig15248:1..719. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930988 vs. ExPASy Swiss-Prot
Match: PP4C1_CAEBR (Serine/threonine-protein phosphatase 4 catalytic subunit 1 OS=Caenorhabditis briggsae GN=pph-4.1 PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.038e-52
Identity = 54/85 (63.53%), Postives = 71/85 (83.53%), Query Frame = 1
Query:  250 SSHGNLDEQIAQLMQCKPLSEQEVRVLCEKAKEILMDESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDR 504
            S+H +LD  I +LM+C+ ++EQ+V+ LC KA+EIL +E NVQ + SPVTICGDIHGQF+DL ELFR+GG  P+TNYLF+GD+VDR
Sbjct:   28 STH-DLDRHIEKLMRCELIAEQDVKTLCAKAREILAEEGNVQVIDSPVTICGDIHGQFYDLMELFRVGGPVPNTNYLFLGDFVDR 111          

HSP 2 Score: 109.383 bits (272), Expect = 1.038e-52
Identity = 47/70 (67.14%), Postives = 60/70 (85.71%), Query Frame = 3
Query:  507 YYSVETVTLLVSLKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANVWKIFTDLFDYFPLTALVE 716
            +YSVET  LL++LK RYP R+ ++RGNHESRQITQVYGFYDEC+RKYGNA+VWK  T++FDY  L A+++
Sbjct:  113 FYSVETFLLLLALKARYPDRMMLIRGNHESRQITQVYGFYDECMRKYGNASVWKHCTEVFDYLALAAVID 182          
BLAST of FC930988 vs. ExPASy Swiss-Prot
Match: PP2A2_PARTE (Serine/threonine-protein phosphatase PP2A catalytic subunit 2 OS=Paramecium tetraurelia GN=Ppn2 PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.039e-52
Identity = 59/86 (68.60%), Postives = 71/86 (82.56%), Query Frame = 1
Query:  247 SSSHGNLDEQIAQLMQCKPLSEQEVRVLCEKAKEILMDESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDR 504
            S+  GN+D QIA+L Q + L+EQEV+ LC KAKEIL DE N+  V++P+TICGDIHGQFHDL ELF+IGG  PDTNYLF+GDYVDR
Sbjct:    9 SNEIGNIDRQIAKLRQGQILTEQEVKSLCIKAKEILQDEPNIIQVRAPLTICGDIHGQFHDLIELFQIGGNLPDTNYLFLGDYVDR 94          

HSP 2 Score: 102.834 bits (255), Expect = 1.039e-52
Identity = 45/68 (66.18%), Postives = 57/68 (83.82%), Query Frame = 3
Query:  513 SVETVTLLVSLKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANVWKIFTDLFDYFPLTALVE 716
            SVET +L++SLKVRY  RI +LRGNHE+R+I ++YGFYDEC RKYGN  VWK FT++F Y PL+A+VE
Sbjct:   98 SVETFSLMLSLKVRYKDRIVLLRGNHENREINKIYGFYDECFRKYGNEIVWKQFTEVFGYLPLSAIVE 165          
BLAST of FC930988 vs. ExPASy Swiss-Prot
Match: PP4C1_CAEEL (Serine/threonine-protein phosphatase 4 catalytic subunit 1 OS=Caenorhabditis elegans GN=pph-4.1 PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 1.764e-52
Identity = 51/81 (62.96%), Postives = 68/81 (83.95%), Query Frame = 1
Query:  262 NLDEQIAQLMQCKPLSEQEVRVLCEKAKEILMDESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDR 504
            +LD  I +LM+C+ ++EQ+V+ LC KA+EIL +E NVQ + SPVTICGDIHGQF+DL ELF++GG  P+TNYLF+GD+VDR
Sbjct:   31 DLDRHIEKLMRCELIAEQDVKTLCAKAREILAEEGNVQVIDSPVTICGDIHGQFYDLMELFKVGGPVPNTNYLFLGDFVDR 111          

HSP 2 Score: 110.153 bits (274), Expect = 1.764e-52
Identity = 48/70 (68.57%), Postives = 60/70 (85.71%), Query Frame = 3
Query:  507 YYSVETVTLLVSLKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANVWKIFTDLFDYFPLTALVE 716
            +YSVET  LL++LK RYP R+ ++RGNHESRQITQVYGFYDECLRKYGNA+VWK  T++FDY  L A+++
Sbjct:  113 FYSVETFLLLLALKARYPDRMMLIRGNHESRQITQVYGFYDECLRKYGNASVWKHCTEVFDYLSLAAVID 182          
BLAST of FC930988 vs. ExPASy Swiss-Prot
Match: PP2A3_PARTE (Serine/threonine-protein phosphatase PP2A catalytic subunit 3 OS=Paramecium tetraurelia GN=Ppn3 PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 5.096e-52
Identity = 57/86 (66.28%), Postives = 70/86 (81.40%), Query Frame = 1
Query:  247 SSSHGNLDEQIAQLMQCKPLSEQEVRVLCEKAKEILMDESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDR 504
            S+  GN+D QIA+L Q + L+E E++ LC KAKEIL DE N+  V++P+TICGDIHGQFHDL ELF+IGG  PDTNYLF+GDYVDR
Sbjct:    9 SNDIGNIDRQIAKLKQGQILTESEIKSLCIKAKEILSDEPNIIQVRAPLTICGDIHGQFHDLIELFQIGGNLPDTNYLFLGDYVDR 94          

HSP 2 Score: 103.219 bits (256), Expect = 5.096e-52
Identity = 46/68 (67.65%), Postives = 57/68 (83.82%), Query Frame = 3
Query:  513 SVETVTLLVSLKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANVWKIFTDLFDYFPLTALVE 716
            SVET +L++SLKVRY  RI +LRGNHE+R+I +VYGFYDEC RKYGN  VWK FT++F Y PL+A+VE
Sbjct:   98 SVETFSLMLSLKVRYKDRIVLLRGNHENREINKVYGFYDECFRKYGNEIVWKQFTEVFGYLPLSAIVE 165          
BLAST of FC930988 vs. ExPASy Swiss-Prot
Match: PP2AB_DICDI (Probable serine/threonine-protein phosphatase 2A catalytic subunit B OS=Dictyostelium discoideum GN=DDB_G0283187 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 6.643e-52
Identity = 48/70 (68.57%), Postives = 60/70 (85.71%), Query Frame = 3
Query:  507 YYSVETVTLLVSLKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANVWKIFTDLFDYFPLTALVE 716
            Y+SVET++LL  LK+RYP RIT+LRGNHESRQITQVYGFY EC+RKYGN  VWK FT++FDY  + A+++
Sbjct:   89 YHSVETISLLTCLKLRYPSRITLLRGNHESRQITQVYGFYGECMRKYGNPTVWKYFTEMFDYLSVAAIID 158          

HSP 2 Score: 112.464 bits (280), Expect = 6.643e-52
Identity = 48/86 (55.81%), Postives = 69/86 (80.23%), Query Frame = 1
Query:  247 SSSHGNLDEQIAQLMQCKPLSEQEVRVLCEKAKEILMDESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDR 504
            ++S  NLD  I +L +C+ L E  ++ + +K KE+L+ ESNVQ ++SPVT+ GD+HGQF+D+ E+F+IGG+CPDTNYLF+GDYVDR
Sbjct:    2 NTSTFNLDHCIEKLQKCEILPESTIKEITDKMKELLISESNVQEIRSPVTVVGDVHGQFYDVLEIFKIGGQCPDTNYLFLGDYVDR 87          
BLAST of FC930988 vs. ExPASy Swiss-Prot
Match: PPE1_SCHPO (Serine/threonine-protein phosphatase ppe1 OS=Schizosaccharomyces pombe GN=ppe1 PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.472e-51
Identity = 52/81 (64.20%), Postives = 68/81 (83.95%), Query Frame = 1
Query:  262 NLDEQIAQLMQCKPLSEQEVRVLCEKAKEILMDESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDR 504
            +LDE IA + +CK L E +++ LCE  K ILM+ESN+QPV++PVT+CGDIHGQF+DL ELFR+GG+ P TNY+FMGD+VDR
Sbjct:    3 DLDEWIATVRKCKYLPEHQLKRLCEMVKVILMEESNIQPVRTPVTVCGDIHGQFYDLLELFRVGGELPSTNYIFMGDFVDR 83          

HSP 2 Score: 105.145 bits (261), Expect = 1.472e-51
Identity = 46/70 (65.71%), Postives = 56/70 (80.00%), Query Frame = 3
Query:  507 YYSVETVTLLVSLKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANVWKIFTDLFDYFPLTALVE 716
            Y+S+ET TL + LK RYP +IT+LRGNHESRQITQVYGFYDEC  KYGNANVWK    +FD+  L A+++
Sbjct:   85 YFSLETFTLFMLLKARYPDKITLLRGNHESRQITQVYGFYDECQTKYGNANVWKYCCQVFDFLTLAAVID 154          
BLAST of FC930988 vs. ExPASy Swiss-Prot
Match: FYPP3_ARATH (Phytochrome-associated serine/threonine protein phosphatase 3 OS=Arabidopsis thaliana GN=FYPP3 PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 3.260e-51
Identity = 52/81 (64.20%), Postives = 68/81 (83.95%), Query Frame = 1
Query:  262 NLDEQIAQLMQCKPLSEQEVRVLCEKAKEILMDESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDR 504
            +LD+ I+++   + LSE E+++LCE  KEIL++ESNVQPV SPVT+CGDIHGQFHDL +LF+ GG  PDTNY+FMGD+VDR
Sbjct:    2 DLDQWISKVKDGQHLSEDELQLLCEYVKEILIEESNVQPVNSPVTVCGDIHGQFHDLMKLFQTGGHVPDTNYIFMGDFVDR 82          

HSP 2 Score: 106.686 bits (265), Expect = 3.260e-51
Identity = 46/70 (65.71%), Postives = 57/70 (81.43%), Query Frame = 3
Query:  507 YYSVETVTLLVSLKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANVWKIFTDLFDYFPLTALVE 716
            Y S+E  T+L+ LK RYP  IT+LRGNHESRQ+TQVYGFYDEC RKYGNAN W+  TD+FDY  L+A+++
Sbjct:   84 YNSLEVFTILLLLKARYPANITLLRGNHESRQLTQVYGFYDECQRKYGNANAWRYCTDVFDYLTLSAIID 153          
BLAST of FC930988 vs. ExPASy Swiss-Prot
Match: PP4C2_CAEEL (Serine/threonine-protein phosphatase 4 catalytic subunit 2 OS=Caenorhabditis elegans GN=pph-4.2 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 3.539e-50
Identity = 50/81 (61.73%), Postives = 66/81 (81.48%), Query Frame = 1
Query:  262 NLDEQIAQLMQCKPLSEQEVRVLCEKAKEILMDESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDR 504
            +LD QI   M+C+ + E +V+ +C K +EIL++E+NVQ + +PVTICGDIHGQFHDL ELFR+GG  P+TNYLF+GDYVDR
Sbjct:   16 DLDRQIEIAMRCELICETQVKSICAKVREILIEEANVQVIDTPVTICGDIHGQFHDLMELFRVGGSPPNTNYLFLGDYVDR 96          

HSP 2 Score: 105.531 bits (262), Expect = 3.539e-50
Identity = 47/70 (67.14%), Postives = 57/70 (81.43%), Query Frame = 3
Query:  507 YYSVETVTLLVSLKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANVWKIFTDLFDYFPLTALVE 716
            Y SVET  LL+ LK RYP RIT++RGNHESRQITQVYGFYDEC+RKYG+  VWK  T++FDY  L A+++
Sbjct:   98 YNSVETFILLMLLKCRYPDRITLIRGNHESRQITQVYGFYDECVRKYGSGQVWKHCTEIFDYLSLAAVID 167          
BLAST of FC930988 vs. ExPASy Swiss-Prot
Match: YD44_SCHPO (Putative serine/threonine-protein phosphatase C22H10.04 OS=Schizosaccharomyces pombe GN=SPAC22H10.04 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 3.541e-50
Identity = 51/70 (72.86%), Postives = 62/70 (88.57%), Query Frame = 3
Query:  507 YYSVETVTLLVSLKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANVWKIFTDLFDYFPLTALVE 716
            YYS+ET+TLL+ LK+RYP+RIT+LRGNHESR ITQ YGFY ECLRKYGNANVWK FTD+FD+  L+A ++
Sbjct:   85 YYSIETITLLICLKLRYPKRITLLRGNHESRGITQTYGFYSECLRKYGNANVWKYFTDIFDFLTLSATID 154          

HSP 2 Score: 100.523 bits (249), Expect = 3.541e-50
Identity = 46/81 (56.79%), Postives = 60/81 (74.07%), Query Frame = 1
Query:  262 NLDEQIAQLMQCKPLSEQEVRVLCEKAKEILMDESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDR 504
            +LD  I +L + + ++E  +  LC  AKE+LM ESNV  + +P+T+ GDIHGQF DL E+FRIGG CP TNYLF+GDYVDR
Sbjct:    3 DLDNIIERLYEKQLIAESVIAYLCSLAKEVLMQESNVVRLSTPITVVGDIHGQFDDLLEIFRIGGPCPYTNYLFLGDYVDR 83          
BLAST of FC930988 vs. ExPASy Swiss-Prot
Match: FYPP1_ARATH (Phytochrome-associated serine/threonine protein phosphatase 1 OS=Arabidopsis thaliana GN=FYPP1 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.541e-50
Identity = 51/81 (62.96%), Postives = 68/81 (83.95%), Query Frame = 1
Query:  262 NLDEQIAQLMQCKPLSEQEVRVLCEKAKEILMDESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDR 504
            +LD+ I+++   + LSE E+++LCE  KEIL++ESNVQPV SPVT+CGDIHGQFHDL +LF+ GG  P+TNY+FMGD+VDR
Sbjct:    2 DLDQWISKVKDGQHLSEDELQLLCEYVKEILIEESNVQPVNSPVTVCGDIHGQFHDLMKLFQTGGHVPETNYIFMGDFVDR 82          

HSP 2 Score: 104.76 bits (260), Expect = 3.541e-50
Identity = 45/70 (64.29%), Postives = 57/70 (81.43%), Query Frame = 3
Query:  507 YYSVETVTLLVSLKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANVWKIFTDLFDYFPLTALVE 716
            Y S+E  T+L+ LK R+P  IT+LRGNHESRQ+TQVYGFYDEC RKYGNAN W+  TD+FDY  L+A+++
Sbjct:   84 YNSLEVFTILLLLKARHPANITLLRGNHESRQLTQVYGFYDECQRKYGNANAWRYCTDVFDYLTLSAIID 153          
The following BLAST results are available for this feature:
BLAST of FC930988 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 190
Match NameE-valueIdentityDescription
PP4C1_CAEBR1.038e-5263.53Serine/threonine-protein phosphatase 4 catalytic s... [more]
PP2A2_PARTE1.039e-5268.60Serine/threonine-protein phosphatase PP2A catalyti... [more]
PP4C1_CAEEL1.764e-5262.96Serine/threonine-protein phosphatase 4 catalytic s... [more]
PP2A3_PARTE5.096e-5266.28Serine/threonine-protein phosphatase PP2A catalyti... [more]
PP2AB_DICDI6.643e-5268.57Probable serine/threonine-protein phosphatase 2A c... [more]
PPE1_SCHPO1.472e-5164.20Serine/threonine-protein phosphatase ppe1 OS=Schiz... [more]
FYPP3_ARATH3.260e-5164.20Phytochrome-associated serine/threonine protein ph... [more]
PP4C2_CAEEL3.539e-5061.73Serine/threonine-protein phosphatase 4 catalytic s... [more]
YD44_SCHPO3.541e-5072.86Putative serine/threonine-protein phosphatase C22H... [more]
FYPP1_ARATH3.541e-5062.96Phytochrome-associated serine/threonine protein ph... [more]

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Properties
Property NameValue
Genbank descriptionC34100B11EF PostHarvP1 Citrus clementina cDNA clone C34100B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930988 ID=FC930988; Name=FC930988; organism=Citrus clementina; type=EST; length=717bp
GAAAATGTTTGTTATTTTAGCCCATTTCTCTCTCTCTCTCTAAACACTGA
AGCCTTCTCTCTTTTTTTTTTTAAAATTTTTTTTTGAGATACAAAATTGA
ATTTTGATTATAGGGTTTCGAAAAAAATTAGGGTTTGTTTGTTGAAATTT
AGGGTTAGGGTTAGATTAAAAAGAGGAAAGTGAAGGGATCTGAGTCTGCA
AATTAAGAAGAAGAAGGACAAGAAAATGAGCTTGGATTCGGTCCCTTCAA
GTTCACATGGAAATCTCGACGAGCAGATTGCTCAGCTTATGCAGTGCAAG
CCCTTATCGGAACAAGAGGTTAGAGTGTTATGCGAAAAGGCCAAGGAGAT
ATTGATGGATGAAAGTAATGTCCAGCCTGTAAAAAGTCCTGTTACAATTT
GTGGTGATATTCATGGACAATTTCATGATCTTGCAGAGCTTTTCCGCATT
GGAGGAAAGTGTCCAGATACAAACTACTTGTTCATGGGAGATTATGTTGA
CCGTGTTACTATTCAGTAGAAACTGTTACGCTTTTGGTATCTCTGAAAGT
GCGTTATCCTCAAAGGATTACTATTCTAAGGGGGAATCATGAAAGTCGTC
AGATTACTCAGGTCTATGGATTCTATGATGAGTGCCTTAGGAAGTACGGC
AATGCAAATGTTTGGAAGATATTCACAGATTTATTTGACTATTTTCCACT
GACAGCATTGGTTGAAT
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