FC930988

Overview
NameFC930988
Unique NameFC930988
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length717
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930988_ssr27 microsatellite FC930988_ssr27:27..40. BLAST: Citrus ESTs to Prunus persica proteins V1
FC930988_ssr205 microsatellite FC930988_ssr205:205..216. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15248 contig Ccv1_Contig15248:1..719. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930988 vs. ExPASy Swiss-Prot
Match: PP4C_KLULA (Serine/threonine-protein phosphatase 4 catalytic subunit OS=Kluyveromyces lactis GN=PPH3 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.116e-40
Identity = 43/69 (62.32%), Postives = 57/69 (82.61%), Query Frame = 3
Query:  507 YYSVETVTLLVSLKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANVWKIFTDLFDYFPLTALV 713
            +YS+E+  LLV  K+RYP RI ++RGNHE+RQIT+VYGFYDE +RKYGN+NVW+   ++FDY PL A+V
Sbjct:   85 FYSLESFLLLVCYKLRYPDRIVLIRGNHETRQITKVYGFYDEVVRKYGNSNVWRYCCEVFDYLPLGAIV 153          

HSP 2 Score: 86.6557 bits (213), Expect = 2.116e-40
Identity = 43/80 (53.75%), Postives = 52/80 (65.00%), Query Frame = 1
Query:  265 LDEQIAQLMQCKPLSEQEVRVLCEKAKEILMDESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDR 504
            LDE I  L Q K + E  +  LC  A+E+LM+ESNV  V +PVTICGDIHGQ HDL  LF   G      Y+F+GD+VDR
Sbjct:    4 LDEIIETLRQGKHVDEDSIYSLCVMAQELLMNESNVTHVDTPVTICGDIHGQLHDLLTLFAKSGGIEKNRYIFLGDFVDR 83          
BLAST of FC930988 vs. ExPASy Swiss-Prot
Match: PPH6_CAEEL (Putative serine/threonine-protein phosphatase pph-6 OS=Caenorhabditis elegans GN=pph-6 PE=2 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 2.754e-40
Identity = 42/70 (60.00%), Postives = 55/70 (78.57%), Query Frame = 3
Query:  507 YYSVETVTLLVSLKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANVWKIFTDLFDYFPLTALVE 716
            +YS+ETVTLL  L ++YP +IT+LRGNHESR+I+ VYGFYDEC  KYG+ NV K F  +FD  P+ AL++
Sbjct:  113 HYSLETVTLLFCLLLKYPNQITLLRGNHESRRISNVYGFYDECQNKYGHGNVHKWFCKVFDVLPIGALID 182          

HSP 2 Score: 92.8189 bits (229), Expect = 2.754e-40
Identity = 44/79 (55.70%), Postives = 54/79 (68.35%), Query Frame = 1
Query:  268 DEQIAQLMQCKPLSEQEVRVLCEKAKEILMDESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDR 504
            ++ I    +CK L E +   LC    + L  E+NV PV SPVTICGDIHGQF+DL ELF+ GG  P+T Y+FMGDYVDR
Sbjct:   33 EQWITWASECKYLPESDAVALCATLIDRLSLEANVVPVSSPVTICGDIHGQFYDLLELFKTGGTVPNTKYVFMGDYVDR 111          
BLAST of FC930988 vs. ExPASy Swiss-Prot
Match: PP4C_CANGA (Serine/threonine-protein phosphatase 4 catalytic subunit OS=Candida glabrata GN=PPH3 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.035e-39
Identity = 41/69 (59.42%), Postives = 57/69 (82.61%), Query Frame = 3
Query:  507 YYSVETVTLLVSLKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANVWKIFTDLFDYFPLTALV 713
            +YS+E+  LL+  K+RYP RIT++RGNHE+RQIT+VYGFYDE +RKYGN+NVW+   ++FDY  L A++
Sbjct:   86 FYSLESFLLLLVYKLRYPDRITLIRGNHETRQITKVYGFYDEVMRKYGNSNVWRYCCEVFDYLSLGAII 154          

HSP 2 Score: 87.0409 bits (214), Expect = 1.035e-39
Identity = 41/81 (50.62%), Postives = 55/81 (67.90%), Query Frame = 1
Query:  262 NLDEQIAQLMQCKPLSEQEVRVLCEKAKEILMDESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDR 504
            +LDE +  L + + + E+ V  LC  ++E+LM+ESNV  V +PVTICGDIHGQ HDL  LF   G    T Y+F+GD+VDR
Sbjct:    4 DLDEILVSLKEGRHIPEETVYALCMDSQELLMNESNVARVDTPVTICGDIHGQLHDLLTLFEKSGGVEKTRYVFLGDFVDR 84          
BLAST of FC930988 vs. ExPASy Swiss-Prot
Match: PP4C_YEAST (Serine/threonine-protein phosphatase 4 catalytic subunit OS=Saccharomyces cerevisiae GN=PPH3 PE=1 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 2.289e-39
Identity = 41/69 (59.42%), Postives = 57/69 (82.61%), Query Frame = 3
Query:  507 YYSVETVTLLVSLKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANVWKIFTDLFDYFPLTALV 713
            +YS+E+  LL+  K+RYP RIT++RGNHE+RQIT+VYGFYDE +RKYGN+NVW+   ++FDY  L A++
Sbjct:   85 FYSLESFLLLLCYKLRYPDRITLIRGNHETRQITKVYGFYDEVVRKYGNSNVWRYCCEVFDYLSLGAII 153          

HSP 2 Score: 85.8853 bits (211), Expect = 2.289e-39
Identity = 42/81 (51.85%), Postives = 54/81 (66.67%), Query Frame = 1
Query:  262 NLDEQIAQLMQCKPLSEQEVRVLCEKAKEILMDESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDR 504
            +LD+ IA L   K + E+ V  LC  ++E+LM+E NV  V +PVTICGDIHGQ HDL  LF   G    T Y+F+GD+VDR
Sbjct:    3 DLDKIIASLRDGKHIPEETVFRLCLNSQELLMNEGNVTQVDTPVTICGDIHGQLHDLLTLFEKSGGVEKTRYIFLGDFVDR 83          
BLAST of FC930988 vs. ExPASy Swiss-Prot
Match: PP4C_ASHGO (Serine/threonine-protein phosphatase 4 catalytic subunit OS=Ashbya gossypii GN=PPH3 PE=3 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 9.289e-38
Identity = 41/69 (59.42%), Postives = 57/69 (82.61%), Query Frame = 3
Query:  507 YYSVETVTLLVSLKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANVWKIFTDLFDYFPLTALV 713
            +YS+E+  LL+  K+RYP RIT++RGNHE+RQIT+VYGFYDE +RKYGN+NVW+   ++FDY  L A++
Sbjct:   87 FYSLESFLLLLCYKLRYPDRITLIRGNHETRQITKVYGFYDEVIRKYGNSNVWRYCCEVFDYLSLGAII 155          

HSP 2 Score: 80.1073 bits (196), Expect = 9.289e-38
Identity = 39/80 (48.75%), Postives = 51/80 (63.75%), Query Frame = 1
Query:  265 LDEQIAQLMQCKPLSEQEVRVLCEKAKEILMDESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDR 504
            LDE I  L   K + E+ +  LC K +E+L++ESNV  V +PVTICGDIHGQ HDL  LF          ++F+GD+VDR
Sbjct:    6 LDEIIEYLRYSKHIPEETIYELCLKCQELLVNESNVTHVDTPVTICGDIHGQLHDLLTLFEKSEGIEKNRFIFLGDFVDR 85          
BLAST of FC930988 vs. ExPASy Swiss-Prot
Match: PP18_ARATH (Serine/threonine-protein phosphatase PP1 isozyme 8 OS=Arabidopsis thaliana GN=TOPP8 PE=2 SV=3)

HSP 1 Score: 87.0409 bits (214), Expect = 3.762e-36
Identity = 42/87 (48.28%), Postives = 57/87 (65.52%), Query Frame = 1
Query:  259 GNLDEQIAQLMQCK-----PLSEQEVRVLCEKAKEILMDESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDR 504
            G LD+ I +L++ K      LSE E+R LC  A++I + + N+  + +P+ ICGDIHGQ+ DL  LF  GG  P  NYLF+GDYVDR
Sbjct:   12 GVLDDIIRRLLEGKGGKQVQLSESEIRQLCFNARQIFLSQPNLLDLHAPIRICGDIHGQYQDLLRLFEYGGYPPSANYLFLGDYVDR 98          

HSP 2 Score: 85.8853 bits (211), Expect = 3.762e-36
Identity = 35/68 (51.47%), Postives = 53/68 (77.94%), Query Frame = 3
Query:  513 SVETVTLLVSLKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANVWKIFTDLFDYFPLTALVE 716
            S+ET+ LL++ K+RYP +I +LRGNHE  +I ++YGFYDEC R++ N  +WK+FTD F+  P+ AL++
Sbjct:  102 SLETICLLLAYKIRYPSKIYLLRGNHEDAKINRIYGFYDECKRRF-NVRLWKVFTDCFNCLPVAALID 168          
BLAST of FC930988 vs. ExPASy Swiss-Prot
Match: PP19_ARATH (Serine/threonine-protein phosphatase PP1 isozyme 9 OS=Arabidopsis thaliana GN=TOPP9 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 3.764e-36
Identity = 42/87 (48.28%), Postives = 57/87 (65.52%), Query Frame = 1
Query:  259 GNLDEQIAQLMQCK-----PLSEQEVRVLCEKAKEILMDESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDR 504
            G LD+ I +L++ K      LSE E+R LC  A++I + + N+  + +P+ ICGDIHGQ+ DL  LF  GG  P  NYLF+GDYVDR
Sbjct:   12 GVLDDIIRRLLEGKGGKQVQLSEVEIRQLCVNARQIFLSQPNLLELHAPIRICGDIHGQYQDLLRLFEYGGYPPSANYLFLGDYVDR 98          

HSP 2 Score: 86.2705 bits (212), Expect = 3.764e-36
Identity = 36/68 (52.94%), Postives = 53/68 (77.94%), Query Frame = 3
Query:  513 SVETVTLLVSLKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANVWKIFTDLFDYFPLTALVE 716
            S+ET+ LL++ K+RYP +I +LRGNHE  +I ++YGFYDEC R++ N  +WKIFTD F+  P+ AL++
Sbjct:  102 SLETICLLLAYKIRYPSKIFLLRGNHEDAKINRIYGFYDECKRRF-NVRLWKIFTDCFNCLPVAALID 168          
BLAST of FC930988 vs. ExPASy Swiss-Prot
Match: PP11_ARATH (Serine/threonine-protein phosphatase PP1 isozyme 1 OS=Arabidopsis thaliana GN=TOPP1 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.063e-35
Identity = 37/67 (55.22%), Postives = 49/67 (73.13%), Query Frame = 1
Query:  304 LSEQEVRVLCEKAKEILMDESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDR 504
            LSE E+R LC  +KEI + + N+  +++P+ ICGDIHGQ+ DL  LF  GG  P+ NYLF+GDYVDR
Sbjct:   43 LSEGEIRQLCAVSKEIFLQQPNLLELEAPIKICGDIHGQYSDLLRLFEYGGFPPEANYLFLGDYVDR 109          

HSP 2 Score: 84.7297 bits (208), Expect = 4.063e-35
Identity = 35/68 (51.47%), Postives = 52/68 (76.47%), Query Frame = 3
Query:  513 SVETVTLLVSLKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANVWKIFTDLFDYFPLTALVE 716
            S+ET+ LL++ K++YP+   +LRGNHES  I ++YGFYDEC R++ N  +WKIFTD F+  P+ AL++
Sbjct:  113 SLETICLLLAYKIKYPENFFLLRGNHESASINRIYGFYDECKRRF-NVRLWKIFTDCFNCLPVAALID 179          
BLAST of FC930988 vs. ExPASy Swiss-Prot
Match: PP11_ACECL (Serine/threonine-protein phosphatase PP1 isozyme 1 OS=Acetabularia cliftonii PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 6.894e-35
Identity = 37/67 (55.22%), Postives = 51/67 (76.12%), Query Frame = 1
Query:  304 LSEQEVRVLCEKAKEILMDESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDR 504
            L+E E+R+LC  +KEIL ++ N+  +++P+ ICGDIHGQ+ DL  LF  GG  P+ NYLF+GDYVDR
Sbjct:   27 LTESEIRLLCLTSKEILSEQPNLLELEAPIKICGDIHGQYTDLLRLFEYGGFPPEANYLFLGDYVDR 93          

HSP 2 Score: 82.8037 bits (203), Expect = 6.894e-35
Identity = 35/68 (51.47%), Postives = 50/68 (73.53%), Query Frame = 3
Query:  513 SVETVTLLVSLKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANVWKIFTDLFDYFPLTALVE 716
            S+ET+ LL++ K++YP+   ILRGNHE   I ++YGFYDEC R+Y N  +WK FTD F+  P+ A+V+
Sbjct:   97 SLETICLLLAFKIKYPENFFILRGNHECASINRIYGFYDECKRRY-NIRLWKTFTDCFNCLPVAAIVD 163          
BLAST of FC930988 vs. ExPASy Swiss-Prot
Match: PP1_PHAVU (Serine/threonine-protein phosphatase PP1 OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 6.896e-35
Identity = 36/68 (52.94%), Postives = 54/68 (79.41%), Query Frame = 3
Query:  513 SVETVTLLVSLKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANVWKIFTDLFDYFPLTALVE 716
            S+ET+ LL++ K+RYP +I +LRGNHE  +I ++YGFYDEC R++ N  +WKIFTD F+  P++AL++
Sbjct:   94 SLETICLLLAYKIRYPDKIFLLRGNHEEAKINRIYGFYDECKRRF-NVRLWKIFTDCFNCLPVSALID 160          

HSP 2 Score: 82.0333 bits (201), Expect = 6.896e-35
Identity = 39/85 (45.88%), Postives = 56/85 (65.88%), Query Frame = 1
Query:  265 LDEQIAQLMQCK-----PLSEQEVRVLCEKAKEILMDESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDR 504
            LD+ I +L++ K      LSE E+R LC  A++I + +  +  +++P+ +CGDIHGQ+ DL  LF  GG  P  NYLF+GDYVDR
Sbjct:    6 LDDVIRRLLEGKGGKQVQLSESEIRQLCVHARQIFLSQPILLELRAPMRVCGDIHGQYQDLLRLFEYGGYPPAANYLFLGDYVDR 90          
The following BLAST results are available for this feature:
BLAST of FC930988 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 190
Match NameE-valueIdentityDescription
PP4C_KLULA2.116e-4062.32Serine/threonine-protein phosphatase 4 catalytic s... [more]
PPH6_CAEEL2.754e-4060.00Putative serine/threonine-protein phosphatase pph-... [more]
PP4C_CANGA1.035e-3959.42Serine/threonine-protein phosphatase 4 catalytic s... [more]
PP4C_YEAST2.289e-3959.42Serine/threonine-protein phosphatase 4 catalytic s... [more]
PP4C_ASHGO9.289e-3859.42Serine/threonine-protein phosphatase 4 catalytic s... [more]
PP18_ARATH3.762e-3648.28Serine/threonine-protein phosphatase PP1 isozyme 8... [more]
PP19_ARATH3.764e-3648.28Serine/threonine-protein phosphatase PP1 isozyme 9... [more]
PP11_ARATH4.063e-3555.22Serine/threonine-protein phosphatase PP1 isozyme 1... [more]
PP11_ACECL6.894e-3555.22Serine/threonine-protein phosphatase PP1 isozyme 1... [more]
PP1_PHAVU6.896e-3552.94Serine/threonine-protein phosphatase PP1 OS=Phaseo... [more]

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Properties
Property NameValue
Genbank descriptionC34100B11EF PostHarvP1 Citrus clementina cDNA clone C34100B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930988 ID=FC930988; Name=FC930988; organism=Citrus clementina; type=EST; length=717bp
GAAAATGTTTGTTATTTTAGCCCATTTCTCTCTCTCTCTCTAAACACTGA
AGCCTTCTCTCTTTTTTTTTTTAAAATTTTTTTTTGAGATACAAAATTGA
ATTTTGATTATAGGGTTTCGAAAAAAATTAGGGTTTGTTTGTTGAAATTT
AGGGTTAGGGTTAGATTAAAAAGAGGAAAGTGAAGGGATCTGAGTCTGCA
AATTAAGAAGAAGAAGGACAAGAAAATGAGCTTGGATTCGGTCCCTTCAA
GTTCACATGGAAATCTCGACGAGCAGATTGCTCAGCTTATGCAGTGCAAG
CCCTTATCGGAACAAGAGGTTAGAGTGTTATGCGAAAAGGCCAAGGAGAT
ATTGATGGATGAAAGTAATGTCCAGCCTGTAAAAAGTCCTGTTACAATTT
GTGGTGATATTCATGGACAATTTCATGATCTTGCAGAGCTTTTCCGCATT
GGAGGAAAGTGTCCAGATACAAACTACTTGTTCATGGGAGATTATGTTGA
CCGTGTTACTATTCAGTAGAAACTGTTACGCTTTTGGTATCTCTGAAAGT
GCGTTATCCTCAAAGGATTACTATTCTAAGGGGGAATCATGAAAGTCGTC
AGATTACTCAGGTCTATGGATTCTATGATGAGTGCCTTAGGAAGTACGGC
AATGCAAATGTTTGGAAGATATTCACAGATTTATTTGACTATTTTCCACT
GACAGCATTGGTTGAAT
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