FC930997

Overview
NameFC930997
Unique NameFC930997
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length718
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15251 contig Ccv1_Contig15251:1..718. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC930997 vs. ExPASy Swiss-Prot
Match: RS4B_SCHPO (40S ribosomal protein S4-B OS=Schizosaccharomyces pombe GN=rps4b PE=1 SV=1)

HSP 1 Score: 290.041 bits (741), Expect = 8.244e-78
Identity = 140/195 (71.79%), Postives = 158/195 (81.03%), Query Frame = 3 
Query:  111 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKLRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGII 695
            M RG KKHLKR+ AP HW+LDKL G +APKPS GPHK RECLPLI+ LRNRLKYAL  REV AILMQR + VD KVRTD T+P GFMDV+S+ KT E+FRL+YD KGRF +H I  EEAK+KLCKV+ VQ G KG+P++ T+DGRTIRYPDPLIK NDTIKL+LETNKI  FIKFD    VMVTGGRN GRVG I
Sbjct:    1 MVRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKAILMQRLIQVDGKVRTDSTFPTGFMDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVGTI 195
[Close]
BLAST of FC930997 vs. ExPASy Swiss-Prot
Match: RS4A_SCHPO (40S ribosomal protein S4-A OS=Schizosaccharomyces pombe GN=rps4a PE=2 SV=2)

HSP 1 Score: 290.041 bits (741), Expect = 8.244e-78
Identity = 140/195 (71.79%), Postives = 158/195 (81.03%), Query Frame = 3 
Query:  111 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKLRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGII 695
            M RG KKHLKR+ AP HW+LDKL G +APKPS GPHK RECLPLI+ LRNRLKYAL  REV AILMQR + VD KVRTD T+P GFMDV+S+ KT E+FRL+YD KGRF +H I  EEAK+KLCKV+ VQ G KG+P++ T+DGRTIRYPDPLIK NDTIKL+LETNKI  FIKFD    VMVTGGRN GRVG I
Sbjct:    1 MVRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKAILMQRLIKVDGKVRTDSTFPTGFMDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVGTI 195
[Close]
BLAST of FC930997 vs. ExPASy Swiss-Prot
Match: RS4Y2_PANTR (40S ribosomal protein S4, Y isoform 2 OS=Pan troglodytes GN=RPS4Y2 PE=2 SV=3)

HSP 1 Score: 289.656 bits (740), Expect = 1.077e-77
Identity = 139/195 (71.28%), Postives = 159/195 (81.54%), Query Frame = 3 
Query:  111 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKLRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGII 695
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHKLRECLPLI+ LRNRLKYALT  EV  I MQR + +D KVR D TYPAGFMDV+SI KT E+FRL+YDTKGRF +H I  EEAK+KLCKVR +  G KGIP++ T+D RTIRYPDPLIK NDT+++DL T KIT FIKFD GNV MV GG N GRVG++
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDEVKKICMQRFIKIDGKVRVDITYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITVEEAKYKLCKVRKITVGTKGIPHLVTHDARTIRYPDPLIKVNDTVQIDLGTGKITSFIKFDTGNVCMVIGGANLGRVGVV 195
[Close]
BLAST of FC930997 vs. ExPASy Swiss-Prot
Match: RS4Y1_MACFU (40S ribosomal protein S4, Y isoform 1 OS=Macaca fuscata fuscata GN=RPS4Y1 PE=2 SV=3)

HSP 1 Score: 288.886 bits (738), Expect = 1.837e-77
Identity = 138/195 (70.77%), Postives = 159/195 (81.54%), Query Frame = 3 
Query:  111 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKLRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGII 695
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHKLRECLPLI+ LRNRLKYALT  EV  I MQR + +D KVR D TYPAGFMDV+SI KT E+FRL+YDTKGRF +H I  EEAK+KLCKVR +  G KGIP++ T+D RTIRYPDP+IK NDT+++DL + KIT FIKFD GNV MV GG N GRVG+I
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRVDVTYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITAEEAKYKLCKVRKITVGTKGIPHLVTHDARTIRYPDPVIKVNDTVRIDLGSGKITSFIKFDTGNVCMVIGGANLGRVGVI 195
[Close]
BLAST of FC930997 vs. ExPASy Swiss-Prot
Match: RS4_LYSTE (40S ribosomal protein S4 OS=Lysiphlebus testaceipes GN=RpS4 PE=2 SV=1)

HSP 1 Score: 286.96 bits (733), Expect = 6.979e-77
Identity = 136/195 (69.74%), Postives = 160/195 (82.05%), Query Frame = 3 
Query:  111 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKLRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGII 695
            MARG KKHLKRLNAPK WML KLGG +AP+PS+GPHKLRECLPL++ LRNRLKYALT  EV  I MQR + VD KVRTD  YP GFMDVV+I KT E FRL+YD KGRF +H I +EEAK+KLCKVR VQ G KG+P++ T+DGRT+RYPDP+IK NDTI+L++ TNKI + IKFD GN+ M+TGGRN GRVG +
Sbjct:    1 MARGPKKHLKRLNAPKSWMLGKLGGVYAPRPSTGPHKLRECLPLLIFLRNRLKYALTNCEVTKITMQRLIKVDGKVRTDSNYPLGFMDVVTIEKTGEFFRLIYDVKGRFSIHRISNEEAKYKLCKVRRVQTGPKGVPFLVTHDGRTLRYPDPVIKVNDTIQLEIATNKILDSIKFDSGNLCMITGGRNLGRVGTV 195
[Close]
BLAST of FC930997 vs. ExPASy Swiss-Prot
Match: RS4Y1_PANTR (40S ribosomal protein S4, Y isoform 1 OS=Pan troglodytes GN=RPS4Y1 PE=2 SV=2)

HSP 1 Score: 285.419 bits (729), Expect = 2.031e-76
Identity = 137/195 (70.26%), Postives = 158/195 (81.03%), Query Frame = 3 
Query:  111 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKLRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGII 695
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHKLRECLPLI+ LRNRLKYALT  EV  I MQR + +D KVR D TYPAGFMDV+SI KT E+FRL+YDTKGRF +H I  EEAK+KLCKVR +  G KGIP++ T+D RTIRYPDP+IK NDT+++DL T KI  FIKFD GN+ MV GG N GRVG+I
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDEVKKICMQRFIKIDGKVRVDVTYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITVEEAKYKLCKVRKITVGVKGIPHLVTHDARTIRYPDPVIKVNDTVQIDLGTGKIINFIKFDTGNLCMVIGGANLGRVGVI 195
[Close]
BLAST of FC930997 vs. ExPASy Swiss-Prot
Match: RS4Y1_PANPA (40S ribosomal protein S4, Y isoform 1 OS=Pan paniscus GN=RPS4Y1 PE=3 SV=2)

HSP 1 Score: 285.419 bits (729), Expect = 2.031e-76
Identity = 137/195 (70.26%), Postives = 158/195 (81.03%), Query Frame = 3 
Query:  111 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKLRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGII 695
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHKLRECLPLI+ LRNRLKYALT  EV  I MQR + +D KVR D TYPAGFMDV+SI KT E+FRL+YDTKGRF +H I  EEAK+KLCKVR +  G KGIP++ T+D RTIRYPDP+IK NDT+++DL T KI  FIKFD GN+ MV GG N GRVG+I
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDEVKKICMQRFIKIDGKVRVDVTYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITVEEAKYKLCKVRKITVGVKGIPHLVTHDARTIRYPDPVIKVNDTVQIDLGTGKIINFIKFDTGNLCMVIGGANLGRVGVI 195
[Close]
BLAST of FC930997 vs. ExPASy Swiss-Prot
Match: RS4Y1_HUMAN (40S ribosomal protein S4, Y isoform 1 OS=Homo sapiens GN=RPS4Y1 PE=2 SV=2)

HSP 1 Score: 285.419 bits (729), Expect = 2.031e-76
Identity = 137/195 (70.26%), Postives = 158/195 (81.03%), Query Frame = 3 
Query:  111 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKLRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGII 695
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHKLRECLPLI+ LRNRLKYALT  EV  I MQR + +D KVR D TYPAGFMDV+SI KT E+FRL+YDTKGRF +H I  EEAK+KLCKVR +  G KGIP++ T+D RTIRYPDP+IK NDT+++DL T KI  FIKFD GN+ MV GG N GRVG+I
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDEVKKICMQRFIKIDGKVRVDVTYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITVEEAKYKLCKVRKITVGVKGIPHLVTHDARTIRYPDPVIKVNDTVQIDLGTGKIINFIKFDTGNLCMVIGGANLGRVGVI 195
[Close]
BLAST of FC930997 vs. ExPASy Swiss-Prot
Match: RS4Y1_GORGO (40S ribosomal protein S4, Y isoform 1 OS=Gorilla gorilla gorilla GN=RPS4Y1 PE=3 SV=2)

HSP 1 Score: 285.419 bits (729), Expect = 2.031e-76
Identity = 137/195 (70.26%), Postives = 158/195 (81.03%), Query Frame = 3 
Query:  111 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKLRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGII 695
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHKLRECLPLI+ LRNRLKYALT  EV  I MQR + +D KVR D TYPAGFMDV+SI KT E+FRL+YDTKGRF +H I  EEAK+KLCKVR +  G KGIP++ T+D RTIRYPDP+IK NDT+++DL T KI  FIKFD GN+ MV GG N GRVG+I
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDEVKKICMQRFIKIDGKVRVDVTYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITVEEAKYKLCKVRKITVGVKGIPHLVTHDARTIRYPDPVIKVNDTVQIDLGTGKIINFIKFDTGNLCMVIGGANLGRVGVI 195
[Close]
BLAST of FC930997 vs. ExPASy Swiss-Prot
Match: RS4Y1_PONPY (40S ribosomal protein S4, Y isoform 1 OS=Pongo pygmaeus GN=RPS4Y1 PE=3 SV=2)

HSP 1 Score: 285.034 bits (728), Expect = 2.652e-76
Identity = 138/195 (70.77%), Postives = 157/195 (80.51%), Query Frame = 3 
Query:  111 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKLRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGII 695
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHKLRECLPLI+ LRNRLKYALT  EV  I MQR + +D KVR D TYPAGFMDV+SI KT E+FRL+YDTKGRF +  I  EEAK+KLCKVR +  G KGIP++ T+D RTIRYPDPLIK NDT+++DL T KI  FIKFD GNV MV GG N GRVG+I
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDEVKKICMQRFIKIDGKVRVDITYPAGFMDVISIDKTGEHFRLVYDTKGRFAVQRITVEEAKYKLCKVRKITVGMKGIPHLVTHDARTIRYPDPLIKVNDTVQIDLGTGKIINFIKFDTGNVCMVIGGANLGRVGVI 195
The following BLAST results are available for this feature:
BLAST of FC930997 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
RS4B_SCHPO8.244e-7871.7940S ribosomal protein S4-B OS=Schizosaccharomyces ... [more]
RS4A_SCHPO8.244e-7871.7940S ribosomal protein S4-A OS=Schizosaccharomyces ... [more]
RS4Y2_PANTR1.077e-7771.2840S ribosomal protein S4, Y isoform 2 OS=Pan trogl... [more]
RS4Y1_MACFU1.837e-7770.7740S ribosomal protein S4, Y isoform 1 OS=Macaca fu... [more]
RS4_LYSTE6.979e-7769.7440S ribosomal protein S4 OS=Lysiphlebus testaceipe... [more]
RS4Y1_PANTR2.031e-7670.2640S ribosomal protein S4, Y isoform 1 OS=Pan trogl... [more]
RS4Y1_PANPA2.031e-7670.2640S ribosomal protein S4, Y isoform 1 OS=Pan panis... [more]
RS4Y1_HUMAN2.031e-7670.2640S ribosomal protein S4, Y isoform 1 OS=Homo sapi... [more]
RS4Y1_GORGO2.031e-7670.2640S ribosomal protein S4, Y isoform 1 OS=Gorilla g... [more]
RS4Y1_PONPY2.652e-7670.7740S ribosomal protein S4, Y isoform 1 OS=Pongo pyg... [more]

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Properties
Property NameValue
Genbank descriptionC34100C09EF PostHarvP1 Citrus clementina cDNA clone C34100C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930997 ID=FC930997; Name=FC930997; organism=Citrus clementina; type=EST; length=718bp
GGCGGGAGTGGAGCTAGCAGCGCTTGTGAGTGCATTTTTCACTTCGTTTT
TGTTTTGCAGGACTGTGACACGCCGTTGGCGAATCCAAGCTCAGGCTCAC
GAACACAAAAATGGCGAGAGGTTTGAAGAAACATTTGAAGAGGCTTAATG
CCCCAAAGCACTGGATGCTTGACAAACTTGGTGGAGCATTTGCTCCCAAG
CCTTCATCTGGGCCACACAAATTAAGGGAGTGTTTGCCCTTAATTCTTAT
CTTACGCAACCGCTTGAAGTATGCTCTTACATACCGAGAAGTCATTGCAA
TTTTGATGCAACGACATGTGTTGGTTGATGCTAAGGTTCGCACAGATAAG
ACTTACCCTGCTGGGTTCATGGATGTTGTGTCAATTCCAAAGACGAATGA
GAACTTCCGTCTCCTTTACGACACCAAGGGCCGGTTCCGCCTTCATTCAA
TCAGGGATGAGGAGGCTAAGTTCAAGCTCTGCAAGGTTCGATCAGTGCAA
TTTGGGCAGAAGGGAATCCCTTACATCAACACTTATGATGGGAGGACTAT
TCGCTACCCAGACCCACTCATCAAGGCCAATGATACCATCAAGCTGGACC
TGGAGACTAACAAGATCACCGAGTTCATCAAGTTTGATGTTGGAAATGTT
GTGATGGTGACTGGAGGGAGAAACAGAGGACGTGTTGGAATCATTAAGAC
AGAGAAAGCATAAGGGTA
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