FC930997

Overview
NameFC930997
Unique NameFC930997
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length718
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15251 contig Ccv1_Contig15251:1..718. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930997 vs. ExPASy Swiss-Prot
Match: RS4E_METKA (30S ribosomal protein S4e OS=Methanopyrus kandleri GN=rps4e PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.287e-26
Identity = 69/205 (33.66%), Postives = 113/205 (55.12%), Query Frame = 3
Query:  120 GLKKHLKRLNAPKHWMLD-KLGGAFAPKPSSGPHKLRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRT--IRYPDP------LIKANDTIKLDL------ETNKITEFIKFDVGNVVMVTGGRNRGRVG 689
            G K+H+KRL AP  W +  K GG FAP+P  GPH +   +PL++++R+ L YA   RE   I+ +  + VD  VR +  +P G MDVV IP+T + +R++ +   R  +  I +EEA+ K+C++++  + + G   I  +DG+   +   DP      +    D++ L+L      E+ K+ + I F+ G  V    GR+ G VG
Sbjct:    7 GPKRHVKRLAAPYAWPIPRKEGGKFAPRPYPGPHTMDTSVPLLILVRDMLGYADYAREARKIITRGEIYVDGVVRKEPKFPVGIMDVVEIPRTGDRYRVVMNEHHRLDVVPISEEEARVKVCRIKNKTYVRGGNLQITMHDGKNWLVEIEDPTDPKEDVYSVGDSLVLELPEPDSGESWKVVDHIPFEEGVWVYAMTGRHSGEVG 211          
BLAST of FC930997 vs. ExPASy Swiss-Prot
Match: RS4E_UNCMA (30S ribosomal protein S4e OS=Uncultured methanogenic archaeon RC-I GN=rps4e PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.608e-26
Identity = 67/192 (34.90%), Postives = 104/192 (54.17%), Query Frame = 3
Query:  132 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKLRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKTEK 707
            HLKR+ AP+ W + +    +  KP  G H     +PL+++LR+ LK A    E+  IL +  VLVD KVR D  Y  G  D +SIP  N N+R++    G+F L  + D  A  K+CK+ +    + G   +N +DG T+   +   K  D++ L +   KI +   + VG++VMVT G++ G +G +K  K
Sbjct:    5 HLKRVAAPRTWPITRKTSKWVAKPMPGAHSEERGMPLVVVLRDLLKVADNTSEIKKILHEGKVLVDGKVRKDYRYTVGMFDTISIPAINANYRVVIGMDGKFHLVPVTDASA--KICKIVNKTALRGGKIQLNLHDGTTMIASND-YKTKDSVILKMPERKIDQHFTYAVGSLVMVTEGKHSGEIGKVKEIK 193          
BLAST of FC930997 vs. ExPASy Swiss-Prot
Match: RS4E_IGNH4 (30S ribosomal protein S4e OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rps4e PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.249e-25
Identity = 73/208 (35.10%), Postives = 114/208 (54.81%), Query Frame = 3
Query:  111 MAR--GLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKLRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLL-YDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRT--IRYPDPL-------IKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIK 698
            MAR  G K+HLKRL AP  W + +    +A KP  GPH + E +PL++++R+ L YA T RE   ++ +  + VD +VR D  +P G MDV+ I   +E +R++ Y  K    +  I  EEAK K+C++ +    + G   +N +DGR   IR  DP         K    + + +   +I +++ F+ G + +V  GRN GRVG I+
Sbjct:    1 MARVGGGKRHLKRLAAPAFWPIHRKEAVWAVKPRPGPHPIEESIPLLILVRDVLGYAETSREARKLIAEGRIKVDGRVRKDYKFPVGAMDVIEIVGADEYYRMIPYPVKYLVPMR-IDAEEAKKKICRIENKVTVKGGHVQLNLHDGRNVLIRVEDPRNPVEAQEYKTLGGLLITVPEQEILDYVPFEEGVIAIVKSGRNVGRVGRIE 207          
BLAST of FC930997 vs. ExPASy Swiss-Prot
Match: RS4E_METAC (30S ribosomal protein S4e OS=Methanosarcina acetivorans GN=rps4e PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.131e-25
Identity = 66/188 (35.11%), Postives = 98/188 (52.13%), Query Frame = 3
Query:  132 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKLRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGII 695
            H KRL+ PK W + K G  +      GPH     LPL +I+R+ LK     RE   IL +  VLVD   R D  +P G  DV+++P  NE +R+L D KGR  LH + +     KLC++ +    + G   +N  DG  I   +      D++ L +   ++ + +KF+VGN+ MV GG++ G  G I
Sbjct:    3 HQKRLSVPKSWKVGKKGNKWISTTRPGPHSQARSLPLGIIIRDILKLVDNSREGKRILSEGKVLVDGIPRKDLRFPVGLFDVITLPLVNEAYRMLQDEKGRLTLHKLNETNVN-KLCRINNKTTVKGGKFQLNLNDGTNIIGSNE-YGTKDSLILSIPDKQVVKHLKFEVGNLAMVVGGQHSGETGKI 188          
BLAST of FC930997 vs. ExPASy Swiss-Prot
Match: RS4E_PYRIL (30S ribosomal protein S4e OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps4e PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.635e-25
Identity = 71/190 (37.37%), Postives = 100/190 (52.63%), Query Frame = 3
Query:  132 HLKRLNAPKHWMLD-KLGGAFAPKPSSGPHKLRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPL---IKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVG 689
            HL+R  AP  W +  K+GG +  + S GPH L   LPL +I+R+ LKYA T RE   I+ + +V +D  +R D  +P G MDVV I  T E +R++ D K  + L  I  EEA  KL +V      + G   ++ +DGR +     +   IK  DT+  DL+   I   I F +G   +VT G N G  G
Sbjct:    3 HLRRTTAPYWWPIPRKIGGVWVVRSSPGPHSLAYSLPLAIIIRDVLKYAKTMREARYIISRGYVKIDGVIRKDYKFPVGLMDVVEIVPTGEIYRVVPDEKKYYALIPISSEEATLKLLRVEGKTAVKGGKLQLHFHDGRNLIVSQDVGRHIKTFDTVLYDLQNKNIKMHIPFKLGAYAVVTRGGNVGFSG 192          
BLAST of FC930997 vs. ExPASy Swiss-Prot
Match: RS4E_METMA (30S ribosomal protein S4e OS=Methanosarcina mazei GN=rps4e PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.077e-24
Identity = 65/188 (34.57%), Postives = 97/188 (51.60%), Query Frame = 3
Query:  132 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKLRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGII 695
            H KRL+ PK W + + G  +      GPH     LPL LI+R+ LK     RE   IL +  VLVD   R D  +P G  DV+++P  NE +R+L D KGR  L+ + +     KLC++ +    + G   +N  DG  I   +      D++ L +    + + +KF+VGN+ MV GG++ G  G I
Sbjct:    3 HQKRLSVPKSWKVGRKGNKWISTTRPGPHSQARSLPLGLIIRDVLKLVDNNREGKRILSEGKVLVDGISRKDLRFPVGLFDVITLPLVNEAYRMLQDEKGRLVLYKLNETNVN-KLCRINNKTTVKGGKIQLNLNDGTNILGSND-YGTKDSLILSIPDKHVVKHLKFEVGNLAMVIGGQHSGETGKI 188          
BLAST of FC930997 vs. ExPASy Swiss-Prot
Match: RS4E_PYRCJ (30S ribosomal protein S4e OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rps4e PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.019e-24
Identity = 69/190 (36.32%), Postives = 100/190 (52.63%), Query Frame = 3
Query:  132 HLKRLNAPKHWMLD-KLGGAFAPKPSSGPHKLRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPL---IKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVG 689
            HL++  AP  W +  K GG +A +PS+GPH L   LPL +++R+ L+YA T RE   I+ + ++ VD  VR D  +P G MDVV I  T E +R++ D    + L  I   EA  K  +V        G   ++ +DGR +  P  +   IK  DT+  DLE   I   +   +G + +VT G N G VG
Sbjct:    3 HLRKSLAPYWWPIPRKAGGVWAVRPSTGPHSLEYSLPLAVVVRDVLRYAKTLREARYIISRGYIKVDGVVRKDYKFPIGLMDVVEIVPTGEIYRVVPDEAKYYDLKPIPSSEAALKPLRVEGKTAVSGGRIQLHFHDGRNLILPPDVGRQIKTFDTVVYDLENKAIKTHLPLRLGQLAVVTHGGNIGFVG 192          
BLAST of FC930997 vs. ExPASy Swiss-Prot
Match: RS4E_METBF (30S ribosomal protein S4e OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps4e PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.019e-24
Identity = 65/188 (34.57%), Postives = 95/188 (50.53%), Query Frame = 3
Query:  132 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKLRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGII 695
            H KRL+ P+ W   K G  +      GPH     LPL +I+R+ LK     RE   IL +  VLVD   R D  +P G  DV+++P  NE +R+  D KGR  LH +       KLC++ +    + G   +N  DG  I   +      D++ L L   +I + ++F VGN+ MV GG++ G +G I
Sbjct:    3 HQKRLSIPRSWKAGKKGYKWVSTTRPGPHSQARSLPLGIIIRDILKLVDNSREGKRILSEGKVLVDGIPRKDLRFPVGLFDVITLPLVNETYRMFQDEKGRLALHKLNATNVN-KLCRINNKTTLKGGKVQLNLNDGTNILGSNE-YSTKDSLILSLPDKQIVKHLQFKVGNLAMVVGGQHSGEIGKI 188          
BLAST of FC930997 vs. ExPASy Swiss-Prot
Match: RS4E_PYRAR (30S ribosomal protein S4e OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rps4e PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.248e-24
Identity = 73/190 (38.42%), Postives = 97/190 (51.05%), Query Frame = 3
Query:  132 HLKRLNAPKHWMLD-KLGGAFAPKPSSGPHKLRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRT-IRYPD--PLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVG 689
            HL+R  AP  W +  K GG +  KPS GPH     LPL +++R+ L+YA T RE   I+ + ++ VD  VR D  +P G MDV+ I  T E +R++ D    + L  I   EA  KL +V        G   ++ +DGR  I  PD    IK  DTI  DLE   I   I   +G V +VT G N G  G
Sbjct:    3 HLRRSLAPYWWPIPRKAGGVWVVKPSPGPHSFAYSLPLAIVIRDVLRYAKTLREARYIVSRGYIKVDGVVRKDYRFPVGLMDVIEIVPTGEVYRVVPDQDRYYNLLPIPSSEASLKLLRVEGKTTVNGGRLQLHFHDGRNLITSPDMGAKIKTFDTILYDLENKTIKTHIPMKLGVVAVVTHGSNVGFSG 192          
BLAST of FC930997 vs. ExPASy Swiss-Prot
Match: RS4E_THENV (30S ribosomal protein S4e OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rps4e PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.855e-24
Identity = 66/187 (35.29%), Postives = 99/187 (52.94%), Query Frame = 3
Query:  132 HLKRLNAPKHWMLD-KLGGAFAPKPSSGPHKLRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPL---IKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRG 680
            HL+R  +P  W +  K GG +A +PS GPH L   +PL L++R+ L+YA T RE   I+ + ++ VD  VR +  +P G MDVV I  T E +R++ D +  + L  I  EEA  KL +V      + G   ++ +DGR +  P      IK  D++  DL+   +   I   +G   +VT G N G
Sbjct:    3 HLRRTTSPYWWPIPRKAGGVWAVRPSPGPHSLAYSIPLALVIRDVLRYAKTLREARMIISRGYIKVDGVVRRNYKFPVGLMDVVEIVPTGEIYRVVPDERSYYALVPITSEEADLKLLRVEGKTAVKGGRLQVHFHDGRNLIMPAETARQIKTFDSVLYDLKARTVRSHIPMRLGVYAVVTHGGNVG 189          
The following BLAST results are available for this feature:
BLAST of FC930997 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
RS4E_METKA3.287e-2633.6630S ribosomal protein S4e OS=Methanopyrus kandleri... [more]
RS4E_UNCMA5.608e-2634.9030S ribosomal protein S4e OS=Uncultured methanogen... [more]
RS4E_IGNH41.249e-2535.1030S ribosomal protein S4e OS=Ignicoccus hospitalis... [more]
RS4E_METAC2.131e-2535.1130S ribosomal protein S4e OS=Methanosarcina acetiv... [more]
RS4E_PYRIL3.635e-2537.3730S ribosomal protein S4e OS=Pyrobaculum islandicu... [more]
RS4E_METMA3.077e-2434.5730S ribosomal protein S4e OS=Methanosarcina mazei ... [more]
RS4E_PYRCJ4.019e-2436.3230S ribosomal protein S4e OS=Pyrobaculum calidifon... [more]
RS4E_METBF4.019e-2434.5730S ribosomal protein S4e OS=Methanosarcina barker... [more]
RS4E_PYRAR5.248e-2438.4230S ribosomal protein S4e OS=Pyrobaculum arsenatic... [more]
RS4E_THENV6.855e-2435.2930S ribosomal protein S4e OS=Thermoproteus neutrop... [more]

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Properties
Property NameValue
Genbank descriptionC34100C09EF PostHarvP1 Citrus clementina cDNA clone C34100C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930997 ID=FC930997; Name=FC930997; organism=Citrus clementina; type=EST; length=718bp
GGCGGGAGTGGAGCTAGCAGCGCTTGTGAGTGCATTTTTCACTTCGTTTT
TGTTTTGCAGGACTGTGACACGCCGTTGGCGAATCCAAGCTCAGGCTCAC
GAACACAAAAATGGCGAGAGGTTTGAAGAAACATTTGAAGAGGCTTAATG
CCCCAAAGCACTGGATGCTTGACAAACTTGGTGGAGCATTTGCTCCCAAG
CCTTCATCTGGGCCACACAAATTAAGGGAGTGTTTGCCCTTAATTCTTAT
CTTACGCAACCGCTTGAAGTATGCTCTTACATACCGAGAAGTCATTGCAA
TTTTGATGCAACGACATGTGTTGGTTGATGCTAAGGTTCGCACAGATAAG
ACTTACCCTGCTGGGTTCATGGATGTTGTGTCAATTCCAAAGACGAATGA
GAACTTCCGTCTCCTTTACGACACCAAGGGCCGGTTCCGCCTTCATTCAA
TCAGGGATGAGGAGGCTAAGTTCAAGCTCTGCAAGGTTCGATCAGTGCAA
TTTGGGCAGAAGGGAATCCCTTACATCAACACTTATGATGGGAGGACTAT
TCGCTACCCAGACCCACTCATCAAGGCCAATGATACCATCAAGCTGGACC
TGGAGACTAACAAGATCACCGAGTTCATCAAGTTTGATGTTGGAAATGTT
GTGATGGTGACTGGAGGGAGAAACAGAGGACGTGTTGGAATCATTAAGAC
AGAGAAAGCATAAGGGTA
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