FC930997
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC930997 vs. ExPASy Swiss-Prot
Match: RS4E_METKA (30S ribosomal protein S4e OS=Methanopyrus kandleri GN=rps4e PE=3 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 3.287e-26 Identity = 69/205 (33.66%), Postives = 113/205 (55.12%), Query Frame = 3 Query: 120 GLKKHLKRLNAPKHWMLD-KLGGAFAPKPSSGPHKLRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRT--IRYPDP------LIKANDTIKLDL------ETNKITEFIKFDVGNVVMVTGGRNRGRVG 689 G K+H+KRL AP W + K GG FAP+P GPH + +PL++++R+ L YA RE I+ + + VD VR + +P G MDVV IP+T + +R++ + R + I +EEA+ K+C++++ + + G I +DG+ + DP + D++ L+L E+ K+ + I F+ G V GR+ G VG Sbjct: 7 GPKRHVKRLAAPYAWPIPRKEGGKFAPRPYPGPHTMDTSVPLLILVRDMLGYADYAREARKIITRGEIYVDGVVRKEPKFPVGIMDVVEIPRTGDRYRVVMNEHHRLDVVPISEEEARVKVCRIKNKTYVRGGNLQITMHDGKNWLVEIEDPTDPKEDVYSVGDSLVLELPEPDSGESWKVVDHIPFEEGVWVYAMTGRHSGEVG 211
BLAST of FC930997 vs. ExPASy Swiss-Prot
Match: RS4E_UNCMA (30S ribosomal protein S4e OS=Uncultured methanogenic archaeon RC-I GN=rps4e PE=3 SV=1) HSP 1 Score: 117.857 bits (294), Expect = 5.608e-26 Identity = 67/192 (34.90%), Postives = 104/192 (54.17%), Query Frame = 3 Query: 132 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKLRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKTEK 707 HLKR+ AP+ W + + + KP G H +PL+++LR+ LK A E+ IL + VLVD KVR D Y G D +SIP N N+R++ G+F L + D A K+CK+ + + G +N +DG T+ + K D++ L + KI + + VG++VMVT G++ G +G +K K Sbjct: 5 HLKRVAAPRTWPITRKTSKWVAKPMPGAHSEERGMPLVVVLRDLLKVADNTSEIKKILHEGKVLVDGKVRKDYRYTVGMFDTISIPAINANYRVVIGMDGKFHLVPVTDASA--KICKIVNKTALRGGKIQLNLHDGTTMIASND-YKTKDSVILKMPERKIDQHFTYAVGSLVMVTEGKHSGEIGKVKEIK 193
BLAST of FC930997 vs. ExPASy Swiss-Prot
Match: RS4E_IGNH4 (30S ribosomal protein S4e OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rps4e PE=3 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 1.249e-25 Identity = 73/208 (35.10%), Postives = 114/208 (54.81%), Query Frame = 3 Query: 111 MAR--GLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKLRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLL-YDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRT--IRYPDPL-------IKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIK 698 MAR G K+HLKRL AP W + + +A KP GPH + E +PL++++R+ L YA T RE ++ + + VD +VR D +P G MDV+ I +E +R++ Y K + I EEAK K+C++ + + G +N +DGR IR DP K + + + +I +++ F+ G + +V GRN GRVG I+ Sbjct: 1 MARVGGGKRHLKRLAAPAFWPIHRKEAVWAVKPRPGPHPIEESIPLLILVRDVLGYAETSREARKLIAEGRIKVDGRVRKDYKFPVGAMDVIEIVGADEYYRMIPYPVKYLVPMR-IDAEEAKKKICRIENKVTVKGGHVQLNLHDGRNVLIRVEDPRNPVEAQEYKTLGGLLITVPEQEILDYVPFEEGVIAIVKSGRNVGRVGRIE 207
BLAST of FC930997 vs. ExPASy Swiss-Prot
Match: RS4E_METAC (30S ribosomal protein S4e OS=Methanosarcina acetivorans GN=rps4e PE=3 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 2.131e-25 Identity = 66/188 (35.11%), Postives = 98/188 (52.13%), Query Frame = 3 Query: 132 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKLRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGII 695 H KRL+ PK W + K G + GPH LPL +I+R+ LK RE IL + VLVD R D +P G DV+++P NE +R+L D KGR LH + + KLC++ + + G +N DG I + D++ L + ++ + +KF+VGN+ MV GG++ G G I Sbjct: 3 HQKRLSVPKSWKVGKKGNKWISTTRPGPHSQARSLPLGIIIRDILKLVDNSREGKRILSEGKVLVDGIPRKDLRFPVGLFDVITLPLVNEAYRMLQDEKGRLTLHKLNETNVN-KLCRINNKTTVKGGKFQLNLNDGTNIIGSNE-YGTKDSLILSIPDKQVVKHLKFEVGNLAMVVGGQHSGETGKI 188
BLAST of FC930997 vs. ExPASy Swiss-Prot
Match: RS4E_PYRIL (30S ribosomal protein S4e OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps4e PE=3 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 3.635e-25 Identity = 71/190 (37.37%), Postives = 100/190 (52.63%), Query Frame = 3 Query: 132 HLKRLNAPKHWMLD-KLGGAFAPKPSSGPHKLRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPL---IKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVG 689 HL+R AP W + K+GG + + S GPH L LPL +I+R+ LKYA T RE I+ + +V +D +R D +P G MDVV I T E +R++ D K + L I EEA KL +V + G ++ +DGR + + IK DT+ DL+ I I F +G +VT G N G G Sbjct: 3 HLRRTTAPYWWPIPRKIGGVWVVRSSPGPHSLAYSLPLAIIIRDVLKYAKTMREARYIISRGYVKIDGVIRKDYKFPVGLMDVVEIVPTGEIYRVVPDEKKYYALIPISSEEATLKLLRVEGKTAVKGGKLQLHFHDGRNLIVSQDVGRHIKTFDTVLYDLQNKNIKMHIPFKLGAYAVVTRGGNVGFSG 192
BLAST of FC930997 vs. ExPASy Swiss-Prot
Match: RS4E_METMA (30S ribosomal protein S4e OS=Methanosarcina mazei GN=rps4e PE=3 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 3.077e-24 Identity = 65/188 (34.57%), Postives = 97/188 (51.60%), Query Frame = 3 Query: 132 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKLRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGII 695 H KRL+ PK W + + G + GPH LPL LI+R+ LK RE IL + VLVD R D +P G DV+++P NE +R+L D KGR L+ + + KLC++ + + G +N DG I + D++ L + + + +KF+VGN+ MV GG++ G G I Sbjct: 3 HQKRLSVPKSWKVGRKGNKWISTTRPGPHSQARSLPLGLIIRDVLKLVDNNREGKRILSEGKVLVDGISRKDLRFPVGLFDVITLPLVNEAYRMLQDEKGRLVLYKLNETNVN-KLCRINNKTTVKGGKIQLNLNDGTNILGSND-YGTKDSLILSIPDKHVVKHLKFEVGNLAMVIGGQHSGETGKI 188
BLAST of FC930997 vs. ExPASy Swiss-Prot
Match: RS4E_PYRCJ (30S ribosomal protein S4e OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rps4e PE=3 SV=1) HSP 1 Score: 111.694 bits (278), Expect = 4.019e-24 Identity = 69/190 (36.32%), Postives = 100/190 (52.63%), Query Frame = 3 Query: 132 HLKRLNAPKHWMLD-KLGGAFAPKPSSGPHKLRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPL---IKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVG 689 HL++ AP W + K GG +A +PS+GPH L LPL +++R+ L+YA T RE I+ + ++ VD VR D +P G MDVV I T E +R++ D + L I EA K +V G ++ +DGR + P + IK DT+ DLE I + +G + +VT G N G VG Sbjct: 3 HLRKSLAPYWWPIPRKAGGVWAVRPSTGPHSLEYSLPLAVVVRDVLRYAKTLREARYIISRGYIKVDGVVRKDYKFPIGLMDVVEIVPTGEIYRVVPDEAKYYDLKPIPSSEAALKPLRVEGKTAVSGGRIQLHFHDGRNLILPPDVGRQIKTFDTVVYDLENKAIKTHLPLRLGQLAVVTHGGNIGFVG 192
BLAST of FC930997 vs. ExPASy Swiss-Prot
Match: RS4E_METBF (30S ribosomal protein S4e OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps4e PE=3 SV=1) HSP 1 Score: 111.694 bits (278), Expect = 4.019e-24 Identity = 65/188 (34.57%), Postives = 95/188 (50.53%), Query Frame = 3 Query: 132 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKLRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGII 695 H KRL+ P+ W K G + GPH LPL +I+R+ LK RE IL + VLVD R D +P G DV+++P NE +R+ D KGR LH + KLC++ + + G +N DG I + D++ L L +I + ++F VGN+ MV GG++ G +G I Sbjct: 3 HQKRLSIPRSWKAGKKGYKWVSTTRPGPHSQARSLPLGIIIRDILKLVDNSREGKRILSEGKVLVDGIPRKDLRFPVGLFDVITLPLVNETYRMFQDEKGRLALHKLNATNVN-KLCRINNKTTLKGGKVQLNLNDGTNILGSNE-YSTKDSLILSLPDKQIVKHLQFKVGNLAMVVGGQHSGEIGKI 188
BLAST of FC930997 vs. ExPASy Swiss-Prot
Match: RS4E_PYRAR (30S ribosomal protein S4e OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rps4e PE=3 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 5.248e-24 Identity = 73/190 (38.42%), Postives = 97/190 (51.05%), Query Frame = 3 Query: 132 HLKRLNAPKHWMLD-KLGGAFAPKPSSGPHKLRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRT-IRYPD--PLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVG 689 HL+R AP W + K GG + KPS GPH LPL +++R+ L+YA T RE I+ + ++ VD VR D +P G MDV+ I T E +R++ D + L I EA KL +V G ++ +DGR I PD IK DTI DLE I I +G V +VT G N G G Sbjct: 3 HLRRSLAPYWWPIPRKAGGVWVVKPSPGPHSFAYSLPLAIVIRDVLRYAKTLREARYIVSRGYIKVDGVVRKDYRFPVGLMDVIEIVPTGEVYRVVPDQDRYYNLLPIPSSEASLKLLRVEGKTTVNGGRLQLHFHDGRNLITSPDMGAKIKTFDTILYDLENKTIKTHIPMKLGVVAVVTHGSNVGFSG 192
BLAST of FC930997 vs. ExPASy Swiss-Prot
Match: RS4E_THENV (30S ribosomal protein S4e OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rps4e PE=3 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 6.855e-24 Identity = 66/187 (35.29%), Postives = 99/187 (52.94%), Query Frame = 3 Query: 132 HLKRLNAPKHWMLD-KLGGAFAPKPSSGPHKLRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPL---IKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRG 680 HL+R +P W + K GG +A +PS GPH L +PL L++R+ L+YA T RE I+ + ++ VD VR + +P G MDVV I T E +R++ D + + L I EEA KL +V + G ++ +DGR + P IK D++ DL+ + I +G +VT G N G Sbjct: 3 HLRRTTSPYWWPIPRKAGGVWAVRPSPGPHSLAYSIPLALVIRDVLRYAKTLREARMIISRGYIKVDGVVRRNYKFPVGLMDVVEIVPTGEIYRVVPDERSYYALVPITSEEADLKLLRVEGKTAVKGGRLQVHFHDGRNLIMPAETARQIKTFDSVLYDLKARTVRSHIPMRLGVYAVVTHGGNVG 189 The following BLAST results are available for this feature:
BLAST of FC930997 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 103
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Sequences
The
following sequences are available for this feature:
EST sequence >FC930997 ID=FC930997; Name=FC930997; organism=Citrus clementina; type=EST; length=718bpback to top |