FC930997

Overview
NameFC930997
Unique NameFC930997
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length718
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15251 contig Ccv1_Contig15251:1..718. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930997 vs. ExPASy Swiss-Prot
Match: RS4E_SULSO (30S ribosomal protein S4e OS=Sulfolobus solfataricus GN=rps4e PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.527e-23
Identity = 65/192 (33.85%), Postives = 101/192 (52.60%), Query Frame = 3
Query:  132 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKLRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTI---RYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIK 698
            H+ R  AP   M+ K    +  +P++GPH + + +PL +++R+ LK A T RE   I+    VLVD KVR D  YP G MD+VSIP  +  FR+L D     R   I  +EA++K  ++ +    ++G   +N  DGR I   +      K   T+K++L + +I +       +  +  GGRN G  GI+K
Sbjct:    3 HITRFEAPWFLMISKKQYKWTVRPNAGPHSIEKSIPLAVVIRDYLKLAGTIREAKHIIFDGKVLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVLPDNVRFMRFSKISADEARYKYVRIINKTTIKEGRIQLNLEDGRNILVDKETAKNFKTLMTLKIELPSQQILDSFTISERSYAIFVGGRNVGIHGIVK 194          
BLAST of FC930997 vs. ExPASy Swiss-Prot
Match: RS4E_SULTO (30S ribosomal protein S4e OS=Sulfolobus tokodaii GN=rps4e PE=3 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 4.443e-23
Identity = 62/195 (31.79%), Postives = 102/195 (52.31%), Query Frame = 3
Query:  132 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKLRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAND-----TIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKT 701
            H+ R  AP    L K    +  + + GPHKL E +PL L+L++ L  A T RE   ++++  ++VD +VR D  +P G MDV+SIP ++  FR++ D         I  E+AK+K  ++ +    + G   +N  DGR I  P   +   +     T+K+++ +  I +  +   G   ++ GGRN G  G+IKT
Sbjct:    3 HITRFEAPWFLNLSKKEYKWTIRANPGPHKLSESIPLALLLKHYLNVAETTREAKRLVVEGKIMVDGRVRKDYKFPVGLMDVISIPSSDLYFRIVPDNIKYLMPVKISKEDAKYKFVRIVNKTTNKNGNIQLNLEDGRNILIPKEKVPEMNYPTLTTLKIEIPSQNIIKSYELSEGKYAIIIGGRNVGLHGVIKT 197          
BLAST of FC930997 vs. ExPASy Swiss-Prot
Match: RS4E_SULIY (30S ribosomal protein S4e OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=rps4e PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.443e-23
Identity = 62/192 (32.29%), Postives = 99/192 (51.56%), Query Frame = 3
Query:  132 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKLRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAND---TIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIK 698
            H+ R   P   ++ K    +  +P++GPH + + +PL +++R+ LK A T RE   I+    VLVD KVR D  YP G MD+VSIP  +  FR++ D     RL  I  +EA +K  ++ +    + G   +N  DGR I       K+     T+K++L +  I +      G+  +  GG+N G  G++K
Sbjct:    3 HITRFETPWFLVISKKQYKWTVRPNAGPHPIEKSIPLAVVIRDYLKLAETVREAKHIIFDGKVLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVIPDNVRFMRLSKISADEAHYKYVRIMNKTTVKGGSIQLNLEDGRNILVDKETAKSFKTLMTLKIELPSQNIVDSFIISEGSYAIFVGGKNVGIHGVVK 194          
BLAST of FC930997 vs. ExPASy Swiss-Prot
Match: RS4E_SULIN (30S ribosomal protein S4e OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rps4e PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.443e-23
Identity = 62/192 (32.29%), Postives = 99/192 (51.56%), Query Frame = 3
Query:  132 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKLRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAND---TIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIK 698
            H+ R   P   ++ K    +  +P++GPH + + +PL +++R+ LK A T RE   I+    VLVD KVR D  YP G MD+VSIP  +  FR++ D     RL  I  +EA +K  ++ +    + G   +N  DGR I       K+     T+K++L +  I +      G+  +  GG+N G  G++K
Sbjct:    3 HITRFETPWFLVISKKQYKWTVRPNAGPHPIEKSIPLAVVIRDYLKLAETVREAKHIIFDGKVLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVIPDNVRFMRLSKISADEAHYKYVRIMNKTTVKGGSIQLNLEDGRNILVDKETAKSFKTLMTLKIELPSQNIVDSFIISEGSYAIFVGGKNVGIHGVVK 194          
BLAST of FC930997 vs. ExPASy Swiss-Prot
Match: RS4E_SULIM (30S ribosomal protein S4e OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=rps4e PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.443e-23
Identity = 62/192 (32.29%), Postives = 99/192 (51.56%), Query Frame = 3
Query:  132 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKLRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAND---TIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIK 698
            H+ R   P   ++ K    +  +P++GPH + + +PL +++R+ LK A T RE   I+    VLVD KVR D  YP G MD+VSIP  +  FR++ D     RL  I  +EA +K  ++ +    + G   +N  DGR I       K+     T+K++L +  I +      G+  +  GG+N G  G++K
Sbjct:    3 HITRFETPWFLVISKKQYKWTVRPNAGPHPIEKSIPLAVVIRDYLKLAETVREAKHIIFDGKVLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVIPDNVRFMRLSKISADEAHYKYVRIMNKTTVKGGSIQLNLEDGRNILVDKETAKSFKTLMTLKIELPSQNIVDSFIISEGSYAIFVGGKNVGIHGVVK 194          
BLAST of FC930997 vs. ExPASy Swiss-Prot
Match: RS4E_SULIL (30S ribosomal protein S4e OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=rps4e PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.443e-23
Identity = 62/192 (32.29%), Postives = 99/192 (51.56%), Query Frame = 3
Query:  132 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKLRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAND---TIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIK 698
            H+ R   P   ++ K    +  +P++GPH + + +PL +++R+ LK A T RE   I+    VLVD KVR D  YP G MD+VSIP  +  FR++ D     RL  I  +EA +K  ++ +    + G   +N  DGR I       K+     T+K++L +  I +      G+  +  GG+N G  G++K
Sbjct:    3 HITRFETPWFLVISKKQYKWTVRPNAGPHPIEKSIPLAVVIRDYLKLAETVREAKHIIFDGKVLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVIPDNVRFMRLSKISADEAHYKYVRIMNKTTVKGGSIQLNLEDGRNILVDKETAKSFKTLMTLKIELPSQNIVDSFIISEGSYAIFVGGKNVGIHGVVK 194          
BLAST of FC930997 vs. ExPASy Swiss-Prot
Match: RS4E_SULIK (30S ribosomal protein S4e OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=rps4e PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.443e-23
Identity = 62/192 (32.29%), Postives = 99/192 (51.56%), Query Frame = 3
Query:  132 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKLRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAND---TIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIK 698
            H+ R   P   ++ K    +  +P++GPH + + +PL +++R+ LK A T RE   I+    VLVD KVR D  YP G MD+VSIP  +  FR++ D     RL  I  +EA +K  ++ +    + G   +N  DGR I       K+     T+K++L +  I +      G+  +  GG+N G  G++K
Sbjct:    3 HITRFETPWFLVISKKQYKWTVRPNAGPHPIEKSIPLAVVIRDYLKLAETVREAKHIIFDGKVLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVIPDNVRFMRLSKISADEAHYKYVRIMNKTTVKGGSIQLNLEDGRNILVDKETAKSFKTLMTLKIELPSQNIVDSFIISEGSYAIFVGGKNVGIHGVVK 194          
BLAST of FC930997 vs. ExPASy Swiss-Prot
Match: RS4E_SULIA (30S ribosomal protein S4e OS=Sulfolobus islandicus (strain M.16.27) GN=rps4e PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.443e-23
Identity = 62/192 (32.29%), Postives = 99/192 (51.56%), Query Frame = 3
Query:  132 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKLRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAND---TIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIK 698
            H+ R   P   ++ K    +  +P++GPH + + +PL +++R+ LK A T RE   I+    VLVD KVR D  YP G MD+VSIP  +  FR++ D     RL  I  +EA +K  ++ +    + G   +N  DGR I       K+     T+K++L +  I +      G+  +  GG+N G  G++K
Sbjct:    3 HITRFETPWFLVISKKQYKWTVRPNAGPHPIEKSIPLAVVIRDYLKLAETVREAKHIIFDGKVLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVIPDNVRFMRLSKISADEAHYKYVRIMNKTTVKGGSIQLNLEDGRNILVDKETAKSFKTLMTLKIELPSQNIVDSFIISEGSYAIFVGGKNVGIHGVVK 194          
BLAST of FC930997 vs. ExPASy Swiss-Prot
Match: RS4E_CALMQ (30S ribosomal protein S4e OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rps4e PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.803e-23
Identity = 61/191 (31.94%), Postives = 97/191 (50.79%), Query Frame = 3
Query:  132 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKLRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDT---IKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGII 695
            HL+R  +P+ W +++ G  ++ KPS GPH     +PL ++LR+   YA T RE   I+ + +V VD KVR D  YP G MDV+ +   NE +R++ D     R   I   EA  K+C++      + G   +N +DGR I       +  +T   + ++LE  K+ ++        V+   G N GR G +
Sbjct:    3 HLRRSTSPEWWPVERKGAPWSIKPSPGPHPANSSIPLAVLLRDVFHYAKTLREARLIIGKGYVKVDGKVRRDYKYPVGLMDVIELTPINEYYRIIPDPVNFLRPIRIDKSEAGVKVCRIEDKTMVKAGKIQLNLHDGRNIIVDQDEGRKYETLGSVVVNLEDGKLMDYYPMQPNQYVIAFNGVNVGRHGTL 193          
BLAST of FC930997 vs. ExPASy Swiss-Prot
Match: RS4E_PYRAE (30S ribosomal protein S4e OS=Pyrobaculum aerophilum GN=rps4e PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.205e-22
Identity = 70/192 (36.46%), Postives = 95/192 (49.48%), Query Frame = 3
Query:  132 HLKRLNAPKHWMLD-KLGGAFAPKPSSGPHKLRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR---TIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGII 695
            HL+R  AP  W +  K GG +  +PS GPH L   LPL LI+R+ LKYA T  E   I+ + +V VD  VR D  +P G MDV+ I  T E +R++ D    + L  I  EEA  KL +V      + G   ++ +DGR   T       IK  D++  DL    I   I   +G   +V  G N G  G +
Sbjct:    3 HLRRTLAPAWWPIPRKKGGVWVVRPSPGPHSLAYSLPLALIIRDVLKYAKTMHEARYIISRGYVKVDGVVRRDYKFPVGLMDVIEIVPTGEVYRVVPDADKYYNLLPISTEEAALKLLRVEGKTMVKGGRIQLHFHDGRNLITTLEAGKQIKTFDSVLYDLRNKAIKAHIPLKLGVNAVVIHGSNVGFSGTL 194          
The following BLAST results are available for this feature:
BLAST of FC930997 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
RS4E_SULSO1.527e-2333.8530S ribosomal protein S4e OS=Sulfolobus solfataric... [more]
RS4E_SULTO4.443e-2331.7930S ribosomal protein S4e OS=Sulfolobus tokodaii G... [more]
RS4E_SULIY4.443e-2332.2930S ribosomal protein S4e OS=Sulfolobus islandicus... [more]
RS4E_SULIN4.443e-2332.2930S ribosomal protein S4e OS=Sulfolobus islandicus... [more]
RS4E_SULIM4.443e-2332.2930S ribosomal protein S4e OS=Sulfolobus islandicus... [more]
RS4E_SULIL4.443e-2332.2930S ribosomal protein S4e OS=Sulfolobus islandicus... [more]
RS4E_SULIK4.443e-2332.2930S ribosomal protein S4e OS=Sulfolobus islandicus... [more]
RS4E_SULIA4.443e-2332.2930S ribosomal protein S4e OS=Sulfolobus islandicus... [more]
RS4E_CALMQ5.803e-2331.9430S ribosomal protein S4e OS=Caldivirga maquilinge... [more]
RS4E_PYRAE2.205e-2236.4630S ribosomal protein S4e OS=Pyrobaculum aerophilu... [more]

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Properties
Property NameValue
Genbank descriptionC34100C09EF PostHarvP1 Citrus clementina cDNA clone C34100C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930997 ID=FC930997; Name=FC930997; organism=Citrus clementina; type=EST; length=718bp
GGCGGGAGTGGAGCTAGCAGCGCTTGTGAGTGCATTTTTCACTTCGTTTT
TGTTTTGCAGGACTGTGACACGCCGTTGGCGAATCCAAGCTCAGGCTCAC
GAACACAAAAATGGCGAGAGGTTTGAAGAAACATTTGAAGAGGCTTAATG
CCCCAAAGCACTGGATGCTTGACAAACTTGGTGGAGCATTTGCTCCCAAG
CCTTCATCTGGGCCACACAAATTAAGGGAGTGTTTGCCCTTAATTCTTAT
CTTACGCAACCGCTTGAAGTATGCTCTTACATACCGAGAAGTCATTGCAA
TTTTGATGCAACGACATGTGTTGGTTGATGCTAAGGTTCGCACAGATAAG
ACTTACCCTGCTGGGTTCATGGATGTTGTGTCAATTCCAAAGACGAATGA
GAACTTCCGTCTCCTTTACGACACCAAGGGCCGGTTCCGCCTTCATTCAA
TCAGGGATGAGGAGGCTAAGTTCAAGCTCTGCAAGGTTCGATCAGTGCAA
TTTGGGCAGAAGGGAATCCCTTACATCAACACTTATGATGGGAGGACTAT
TCGCTACCCAGACCCACTCATCAAGGCCAATGATACCATCAAGCTGGACC
TGGAGACTAACAAGATCACCGAGTTCATCAAGTTTGATGTTGGAAATGTT
GTGATGGTGACTGGAGGGAGAAACAGAGGACGTGTTGGAATCATTAAGAC
AGAGAAAGCATAAGGGTA
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