FC930997

Overview
NameFC930997
Unique NameFC930997
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length718
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15251 contig Ccv1_Contig15251:1..718. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930997 vs. ExPASy Swiss-Prot
Match: RS4E_NANEQ (30S ribosomal protein S4e OS=Nanoarchaeum equitans GN=rps4e PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.184e-21
Identity = 68/194 (35.05%), Postives = 99/194 (51.03%), Query Frame = 3
Query:  123 LKKHLKRLNAPKHWMLD-KLGGAFAPKPSSGPHKLRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCK-VRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIK 698
            +K+HL+ L  P+ W +  K  G +  KPS GPH     +P+ + LR+ L  A   REV  +L    VLVD +   D  +P G  DV++IP+ NE +R+L D +G+  L  I  EEA  K  K +R V      I Y  T DGRT    D   K +  +  ++   KI E I  +      +  G++ GR+G+IK
Sbjct:    5 IKRHLRSLAVPRTWPVPRKSRGYWIVKPSPGPHSKEFAMPIAVWLRDYLGLAENMREVRYLLNNGKVLVDGRPIKDYKFPVGLFDVLAIPEINEYYRVLLDERGKLYLKKIDKEEANIKYGKIIRKVSVRGGKIQYTLT-DGRTF-LGDNSYKTHYGVVYEIPNFKIREVIPLEKDRKAYIIRGKHTGRIGVIK 196          
BLAST of FC930997 vs. ExPASy Swiss-Prot
Match: RS4E_SULAC (30S ribosomal protein S4e OS=Sulfolobus acidocaldarius GN=rps4e PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.159e-21
Identity = 66/196 (33.67%), Postives = 96/196 (48.98%), Query Frame = 3
Query:  132 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKLRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTI--------RYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGII 695
            H+ R  AP    + K    +  +  +GPHK++E +PL ++L+  LK   T RE   I+    VLVD KVR D  YP G MDVV IP  +   R++ D        +I  E+AK+K  ++ +    + G+  +N  DGR I        +Y  P +    T+K++L   KIT       G   M+ GGRN G  G I
Sbjct:    3 HITRFEAPWFLKVGKKEYKWIIRSRAGPHKIQESVPLAILLKYYLKAVDTTREAKRIIFDGKVLVDGKVRRDYKYPVGLMDVVEIPSADLRVRIIPDNVRYLTTINISREDAKYKFVRIMNKTTLKSGVLQLNLEDGRNILLKGEELSQYNLPTL---TTLKIELPEQKITTAYTIKEGVYAMIIGGRNAGLHGKI 195          
BLAST of FC930997 vs. ExPASy Swiss-Prot
Match: RS4E_METHJ (30S ribosomal protein S4e OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps4e PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.580e-20
Identity = 59/191 (30.89%), Postives = 100/191 (52.36%), Query Frame = 3
Query:  132 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKLRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDL---ETNKITEFIKFDVGNVVMVTGGRNRGRVGII 695
            HLKR+ +PK W + +    F  K S GPH  +  LP+++  R+++      +E   +L +R ++V+ +         G  D+VSIPK+ +++R+L D KGR     I ++ A  +L K+ +    + G   +N  DG  +   D   K+ D+I L L   + N+I +   F  GN+ M+ GG++ G VG I
Sbjct:    4 HLKRVVSPKSWGIPRKTDKFVTKTSPGPHN-KNALPIVVWARDQMGIVRNMKEAKHVLREREIIVNGRPVRHPDMGIGIFDIVSIPKSGKHYRILRDKKGRHVTIPIDEDAASSRLVKITNKTIVKGGRIQLNLRDGSNV-LTDKQYKSGDSIVLSLKEGQKNEIIDHFPFQPGNMAMIIGGKHSGVVGRI 192          
BLAST of FC930997 vs. ExPASy Swiss-Prot
Match: RS4_BIGNA (40S ribosomal protein S4 OS=Bigelowiella natans GN=RPS4 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.282e-19
Identity = 55/196 (28.06%), Postives = 98/196 (50.00%), Query Frame = 3
Query:  111 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKLRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIK 698
            MA+G+KKH KR+++       K  G F  K SSGPH   + + L+ I++     A   +E   ++    + V+ K      +P   MD +S P  N+++R+L    G+  ++ I   E   K+CKV  +         I T D R ++     IK  D++ +    ++I   +KF+VG++ ++T G++ G + +IK
Sbjct:    1 MAKGIKKHQKRISSNTMIKYKKKLGIFNTKISSGPHSKVKSVSLLNIIKKFFHLADNNQEAQKVVKTGFLYVNGKKCLSHKFPISLMDTISFPLANKHYRVLLSKAGKLTVYEINQNEKDLKICKVIKIINASSKNKIIITDDLRELKINYAKIKVEDSLLIKTINDEIVYALKFEVGSLCLITRGKHLGTIAVIK 196          
BLAST of FC930997 vs. ExPASy Swiss-Prot
Match: RS4E_METS5 (30S ribosomal protein S4e OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rps4e PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.892e-19
Identity = 60/194 (30.93%), Postives = 94/194 (48.45%), Query Frame = 3
Query:  132 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKLRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDP-----LIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIK 698
            H+ RL AP      K    +  + S GPH L + +PL L+LR+ L +  + +E   I+    VLVD +VR D  YP G MDV++IP  +   R++ D     +   I +EE+KFKL ++ +    + G+   N  DGR +           +    T+K+ +   +I     F     VM  GG+N G +G +K
Sbjct:    3 HITRLEAPWFLRASKKEYKWTVRASPGPHPLGKSIPLGLLLRDYLAFTSSLKESKKIISDGKVLVDGRVRRDYKYPVGLMDVIAIPHADLYLRIVPDRARLLKPVKISEEESKFKLVRLLNKTLVKGGLLQFNLEDGRNLLISKESTEMFKLPTLTTLKISIPNQEILGVYGFKENVYVMAVGGKNAGIIGQLK 196          
BLAST of FC930997 vs. ExPASy Swiss-Prot
Match: RS4E_HALSA (30S ribosomal protein S4e OS=Halobacterium salinarium GN=rps4e PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.587e-18
Identity = 54/191 (28.27%), Postives = 91/191 (47.64%), Query Frame = 3
Query:  123 LKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKLRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGII 695
            +  H KRL+ PK W +++    F  K  +GPH     +PL+++LR+ L+Y     E    +    VLV+     D   P G  D+++ P  +E +R+  D  GR  L  I  + A  KL KV        G   +N +DG  +   +      D++ +D +TN+I    +++ G +V    G++ G +G I
Sbjct:    1 MTNHQKRLSVPKSWPVERKTETFTAKAGAGPHG-ESGVPLVVVLRDVLEYVDDTSEAQYAINTDGVLVNGDSVGDVNRPIGMFDILAFPDRDEYYRVFPDEGGRLGLTEIDADAAGSKLNKVTDKTTVSGGRTQLNFHDGSNLALDEDAYAGGDSVVVDTDTNEIVAHFQYEEGALVTAVAGQHAGDIGEI 190          
BLAST of FC930997 vs. ExPASy Swiss-Prot
Match: RS4E_HALS3 (30S ribosomal protein S4e OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rps4e PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.587e-18
Identity = 54/191 (28.27%), Postives = 91/191 (47.64%), Query Frame = 3
Query:  123 LKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKLRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGII 695
            +  H KRL+ PK W +++    F  K  +GPH     +PL+++LR+ L+Y     E    +    VLV+     D   P G  D+++ P  +E +R+  D  GR  L  I  + A  KL KV        G   +N +DG  +   +      D++ +D +TN+I    +++ G +V    G++ G +G I
Sbjct:    1 MTNHQKRLSVPKSWPVERKTETFTAKAGAGPHG-ESGVPLVVVLRDVLEYVDDTSEAQYAINTDGVLVNGDSVGDVNRPIGMFDILAFPDRDEYYRVFPDEGGRLGLTEIDADAAGSKLNKVTDKTTVSGGRTQLNFHDGSNLALDEDAYAGGDSVVVDTDTNEIVAHFQYEEGALVTAVAGQHAGDIGEI 190          
BLAST of FC930997 vs. ExPASy Swiss-Prot
Match: RS4E_THEVO (30S ribosomal protein S4e OS=Thermoplasma volcanium GN=rps4e PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.635e-17
Identity = 58/186 (31.18%), Postives = 89/186 (47.85%), Query Frame = 3
Query:  138 KRLNAPKHWMLDKLGGAFAPKPSSGPHKLRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGII 695
            KRL  P+   + +    + P P  G HK    + L+ I+R+ L+ +   RE   IL    V VD KV  ++ +  GFMDV+ I  + E++R++Y+ +G   L S   + A  K  +V++          +  +DGR +   D  I   D +   L   KITE IK   GN   +TGG + G  G I
Sbjct:    6 KRLMVPRTVKIPRKTYFWGPTPLPGRHKADHSVTLLTIIRDYLRLSDKEREATRILANGLVKVDGKVVKERKFGVGFMDVIEI--SGESYRVVYNNQGALVLVSESKDRANMKPLQVKNKVIAPGNKIQLGFHDGRVMVTEDRSISVGDVVIASLPDMKITEIIKMQPGNKAFITGGSHVGETGTI 189          
BLAST of FC930997 vs. ExPASy Swiss-Prot
Match: RS4E_NATPD (30S ribosomal protein S4e OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps4e PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.635e-17
Identity = 54/192 (28.12%), Postives = 95/192 (49.48%), Query Frame = 3
Query:  123 LKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKLRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPD-PLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGII 695
            +  H KRL  PK W +++   A+  K ++GPH   E +PL+++LR+ L Y  + +E    L Q  +L++    +D+  P G  D+++  +  E +R+  D  GR  L  I ++ A  KL K+        G   ++ +DG T+   D      ND+I +  +  +I     ++ G +V    G + GR+G I
Sbjct:    1 MTNHQKRLAVPKSWPVERKEEAYTTKAAAGPHG-EEGVPLLIVLRDVLGYVDSKKEARYALEQDSILINGTAVSDERRPVGMFDILAFDEREEYYRIFPDEGGRLSLTPIDEDAAGSKLGKIVGKTQVAGGDTQLSLHDGETLLVEDATAYDTNDSIVVSNDGEEIVAHFTYEEGALVTAVSGAHAGRIGTI 191          
BLAST of FC930997 vs. ExPASy Swiss-Prot
Match: RS4E_HALLT (30S ribosomal protein S4e OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rps4e PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.635e-17
Identity = 53/190 (27.89%), Postives = 93/190 (48.95%), Query Frame = 3
Query:  123 LKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKLRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRY-PDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVG 689
            + +H KRL  P  W +++    F  K  +GPH     +PL+++LR+ L Y  + +E    L    VLV+    +D+  P G  D+++ P+  E FR+  D  GR  L S+ +E A  +L K+ +      G   +  +DG  +    D      D+I +D E+  +    +++ G +V    G++ GR+G
Sbjct:    1 MTRHQKRLAVPNSWPVERKTNTFTVKAGAGPHG-EAGVPLVVLLRDVLGYVDSTKEARYALNNDSVLVNGDAISDEQRPIGMFDILAFPERGEFFRVFPDEGGRLALTSVDEEAAGSRLGKITNKSVVPGGDAQLTLHDGTNVLVDADTEYDTKDSIVVDNESKDVVAHFEYEEGALVTAVAGQHAGRIG 189          
The following BLAST results are available for this feature:
BLAST of FC930997 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
RS4E_NANEQ3.184e-2135.0530S ribosomal protein S4e OS=Nanoarchaeum equitans... [more]
RS4E_SULAC4.159e-2133.6730S ribosomal protein S4e OS=Sulfolobus acidocalda... [more]
RS4E_METHJ1.580e-2030.8930S ribosomal protein S4e OS=Methanospirillum hung... [more]
RS4_BIGNA2.282e-1928.0640S ribosomal protein S4 OS=Bigelowiella natans GN... [more]
RS4E_METS53.892e-1930.9330S ribosomal protein S4e OS=Metallosphaera sedula... [more]
RS4E_HALSA9.587e-1828.2730S ribosomal protein S4e OS=Halobacterium salinar... [more]
RS4E_HALS39.587e-1828.2730S ribosomal protein S4e OS=Halobacterium salinar... [more]
RS4E_THEVO1.635e-1731.1830S ribosomal protein S4e OS=Thermoplasma volcaniu... [more]
RS4E_NATPD1.635e-1728.1330S ribosomal protein S4e OS=Natronomonas pharaoni... [more]
RS4E_HALLT1.635e-1727.8930S ribosomal protein S4e OS=Halorubrum lacusprofu... [more]

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Properties
Property NameValue
Genbank descriptionC34100C09EF PostHarvP1 Citrus clementina cDNA clone C34100C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930997 ID=FC930997; Name=FC930997; organism=Citrus clementina; type=EST; length=718bp
GGCGGGAGTGGAGCTAGCAGCGCTTGTGAGTGCATTTTTCACTTCGTTTT
TGTTTTGCAGGACTGTGACACGCCGTTGGCGAATCCAAGCTCAGGCTCAC
GAACACAAAAATGGCGAGAGGTTTGAAGAAACATTTGAAGAGGCTTAATG
CCCCAAAGCACTGGATGCTTGACAAACTTGGTGGAGCATTTGCTCCCAAG
CCTTCATCTGGGCCACACAAATTAAGGGAGTGTTTGCCCTTAATTCTTAT
CTTACGCAACCGCTTGAAGTATGCTCTTACATACCGAGAAGTCATTGCAA
TTTTGATGCAACGACATGTGTTGGTTGATGCTAAGGTTCGCACAGATAAG
ACTTACCCTGCTGGGTTCATGGATGTTGTGTCAATTCCAAAGACGAATGA
GAACTTCCGTCTCCTTTACGACACCAAGGGCCGGTTCCGCCTTCATTCAA
TCAGGGATGAGGAGGCTAAGTTCAAGCTCTGCAAGGTTCGATCAGTGCAA
TTTGGGCAGAAGGGAATCCCTTACATCAACACTTATGATGGGAGGACTAT
TCGCTACCCAGACCCACTCATCAAGGCCAATGATACCATCAAGCTGGACC
TGGAGACTAACAAGATCACCGAGTTCATCAAGTTTGATGTTGGAAATGTT
GTGATGGTGACTGGAGGGAGAAACAGAGGACGTGTTGGAATCATTAAGAC
AGAGAAAGCATAAGGGTA
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