FC930999

Overview
NameFC930999
Unique NameFC930999
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length719
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930999 vs. ExPASy Swiss-Prot
Match: EXP22_ARATH (Expansin-A22 OS=Arabidopsis thaliana GN=EXPA22 PE=2 SV=2)

HSP 1 Score: 288.5 bits (737), Expect = 2.418e-77
Identity = 131/223 (58.74%), Postives = 161/223 (72.20%), Query Frame = 2
Query:    2 WQSAHSTFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKGANTQWLSMSRNWGQNWQSNAQLVGQALSFRVTGSDRRTSTSWNVAPANWQFGQTFSGK 670
            W  A +TFYG      T  GACGYGNL+ QGYG+ TAALSTALFN+G +CGAC+E+ C  DPQWC PG+  + ITATNFCP N+++ +D   WCNPP+ HFDL++ MFLK+A+Y+AG+VPV YRR+PC K GG++F   G  YF +VL+ NV GAGDI  V VKG  T W++M +NWGQNW +   L GQ LSFRVT SD  T   WNV P NW FGQTF G+
Sbjct:   52 WYDARATFYGDIHGGDTQQGACGYGNLFRQGYGLATAALSTALFNDGYTCGACYEIMCTRDPQWCLPGS--VKITATNFCPANYSKTTDL--WCNPPQKHFDLSLAMFLKIAKYKAGVVPVRYRRIPCSKTGGVKFETKGNPYFLMVLIYNVGGAGDIKYVQVKGNKTGWITMKKNWGQNWTTITVLTGQGLSFRVTTSDGITKDFWNVMPKNWGFGQTFDGR 270          
BLAST of FC930999 vs. ExPASy Swiss-Prot
Match: EXP26_ARATH (Putative expansin-A26 OS=Arabidopsis thaliana GN=EXPA26 PE=3 SV=2)

HSP 1 Score: 286.96 bits (733), Expect = 7.036e-77
Identity = 130/223 (58.30%), Postives = 161/223 (72.20%), Query Frame = 2
Query:    2 WQSAHSTFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKGANTQWLSMSRNWGQNWQSNAQLVGQALSFRVTGSDRRTSTSWNVAPANWQFGQTFSGK 670
            W  A +TFYG      T  GACGYGNL+ QGYG+ TAALSTALFN+G +CGAC+E+ C  DPQWC PG+  + ITATNFCP N+++ +D   WCNPP+ HFDL++ MFLK+A+Y+AG+VPV YRR+PC K GG++F   G  YF +VL+ NV GAGDI  V VK   T W++M +NWGQNW ++  L GQ LSFRVT +D  T   WNV P NW FGQTF GK
Sbjct:   58 WYDARATFYGDIHGGDTQQGACGYGNLFRQGYGLATAALSTALFNDGYTCGACYEIMCTRDPQWCLPGS--VKITATNFCPANYSKTTDL--WCNPPQKHFDLSLAMFLKIAKYKAGVVPVRYRRIPCSKTGGVKFETKGNPYFLMVLIYNVGGAGDIKYVQVKENKTGWITMKKNWGQNWTTSTVLTGQGLSFRVTTTDGITKDFWNVMPKNWGFGQTFDGK 276          
BLAST of FC930999 vs. ExPASy Swiss-Prot
Match: EXP18_ARATH (Expansin-A18 OS=Arabidopsis thaliana GN=EXPA18 PE=2 SV=1)

HSP 1 Score: 281.182 bits (718), Expect = 3.861e-75
Identity = 128/224 (57.14%), Postives = 164/224 (73.21%), Query Frame = 2
Query:    2 WQSAHSTFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKGANTQWLSMSRNWGQNWQSNAQLVGQALSFRVTG-SDRRTSTSWNVAPANWQFGQTFSGK 670
            W++A +TFYG    S TMGGACGYGN+Y  GYGV T ALSTALFN G +CG CF+LKC   P  C  G+PA ++TATN CPPN+ Q S+NGGWCNPPR HFDL  P F+K+A ++AGI+PVSYRRV C+K GGIRF   G  Y+ LV V NV G GDI  ++VKG+ T W++MS NWG ++Q+ + L GQ+LSFR+T  + R+T  ++N APA+W  G+T+  K
Sbjct:   31 WRTASATFYGDDTGSATMGGACGYGNMYDSGYGVATTALSTALFNEGYACGQCFQLKCVSSPN-CYYGSPATVVTATNICPPNYGQASNNGGWCNPPRVHFDLTKPAFMKIANWKAGIIPVSYRRVACKKIGGIRFKFEGNGYWLLVYVMNVGGPGDIKTMAVKGSRTGWINMSHNWGASYQAFSSLYGQSLSFRLTSYTTRQTIYAYNAAPASWSAGKTYQSK 253          
BLAST of FC930999 vs. ExPASy Swiss-Prot
Match: EXP23_ARATH (Expansin-A23 OS=Arabidopsis thaliana GN=EXPA23 PE=2 SV=2)

HSP 1 Score: 280.411 bits (716), Expect = 6.585e-75
Identity = 126/223 (56.50%), Postives = 158/223 (70.85%), Query Frame = 2
Query:    2 WQSAHSTFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKGANTQWLSMSRNWGQNWQSNAQLVGQALSFRVTGSDRRTSTSWNVAPANWQFGQTFSGK 670
            W  A +TFYG      T  GACGYG+L+ QGYG+ TAALSTALFN G +CGAC+++ C  DPQWC PG+  + ITATNFCPP++++    G WCNPP+ HFDL++PMFLK+AQY+AG+VPV YRR+ C + GG++F   G  YF ++L  NV GAGDI  + VKG  T W++M +NWGQNW +   L GQ +SFRVT SD  T    NV P NW FGQTF GK
Sbjct:   48 WYDARATFYGDIHGGETQQGACGYGDLFKQGYGLETAALSTALFNEGYTCGACYQIMCVNDPQWCLPGS--VKITATNFCPPDYSKTE--GVWCNPPQKHFDLSLPMFLKIAQYKAGVVPVKYRRISCARTGGVKFETKGNPYFLMILPYNVGGAGDIKLMQVKGDKTGWITMQKNWGQNWTTGVNLTGQGISFRVTTSDGVTKDFNNVMPNNWGFGQTFDGK 266          
BLAST of FC930999 vs. ExPASy Swiss-Prot
Match: EXP25_ARATH (Expansin-A25 OS=Arabidopsis thaliana GN=EXPA25 PE=2 SV=2)

HSP 1 Score: 279.641 bits (714), Expect = 1.123e-74
Identity = 127/223 (56.95%), Postives = 157/223 (70.40%), Query Frame = 2
Query:    2 WQSAHSTFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKGANTQWLSMSRNWGQNWQSNAQLVGQALSFRVTGSDRRTSTSWNVAPANWQFGQTFSGK 670
            W  A +TFYG      T  GACGYG+L+ QGYG+ TAALSTALFN G +CGAC+++ C  DPQWC PG   I ITATNFCPP++++    G WCNPP+ HFDL++PMFLK+AQY+AG+VPV YRR+ C + GG++F   G  YF ++L  NV GAGDI  + VKG  T W++M +NWGQNW +   L GQ +SFRVT SD  T    NV P NW FGQTF GK
Sbjct:   55 WYDARATFYGDIHGGETQQGACGYGDLFKQGYGLETAALSTALFNEGYTCGACYQIMCVHDPQWCLPGT--IKITATNFCPPDYSKTE--GVWCNPPQKHFDLSLPMFLKIAQYKAGVVPVKYRRISCARTGGVKFETKGNPYFLMILPYNVGGAGDIKLMQVKGDKTGWITMQKNWGQNWTTGVNLTGQGISFRVTTSDGVTKDFNNVMPNNWGFGQTFDGK 273          
BLAST of FC930999 vs. ExPASy Swiss-Prot
Match: EXPA7_ARATH (Expansin-A7 OS=Arabidopsis thaliana GN=EXPA7 PE=2 SV=1)

HSP 1 Score: 277.715 bits (709), Expect = 4.268e-74
Identity = 129/228 (56.58%), Postives = 165/228 (72.37%), Query Frame = 2
Query:    2 WQSAHSTFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKGANTQWLSMSRNWGQNWQSNAQLVGQALSFRVTG-SDRRTSTSWNVAPANWQFGQTF-SGKNFR 679
            W+ AH+TFYG      TMGGACGYGNL++ GYG++TAALST LFN+G  CG CF++ C   P  C  G   + +TATN CPPN+ Q S+ GGWCNPPR HFD+A P F+KLA +RAGI+PV+YRRVPC++ GG+RF   G  Y+ L+ V NV GAGDI  ++VKG+ T W+SMS NWG ++Q+ + L GQ+LSFRVT  +   T  +WNVAPANW  G+T+ S  NFR
Sbjct:   37 WRYAHATFYGDETGGETMGGACGYGNLFNSGYGLSTAALSTTLFNDGYGCGQCFQITCSKSPH-CYSGKSTV-VTATNLCPPNWYQDSNAGGWCNPPRTHFDMAKPAFMKLAYWRAGIIPVAYRRVPCQRSGGMRFQFQGNSYWLLIFVMNVGGAGDIKSMAVKGSRTNWISMSHNWGASYQAFSSLYGQSLSFRVTSYTTGETIYAWNVAPANWSGGKTYKSTANFR 262          
BLAST of FC930999 vs. ExPASy Swiss-Prot
Match: EXP18_ORYSJ (Expansin-A18 OS=Oryza sativa subsp. japonica GN=EXPA18 PE=2 SV=2)

HSP 1 Score: 276.559 bits (706), Expect = 9.509e-74
Identity = 131/223 (58.74%), Postives = 156/223 (69.96%), Query Frame = 2
Query:    2 WQSAHSTFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGD--PQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKGANTQWLSMSRNWGQNWQSNAQLVGQALSFRVTGSDRRTSTSWNVAPANWQFGQTFS 664
            W    +TFYGG+D SGTMGGACGYGNLY QGYG+N AALST LFNNG SCG C+ + C  D  P  C  G  AI +T TNFCPPN+  P   GGWCN  RPHFD++ P +  +  Y AGIVP+ Y++V C + GG+RFTI G  YF LVLVTN+AG+G I  +SVKG++T W+ MSRNWG NWQ  A L GQALSF VT +  +T    +V PA W FGQTFS
Sbjct:   23 WLQGTATFYGGADGSGTMGGACGYGNLYDQGYGINNAALSTPLFNNGASCGQCYLIICNYDKAPSGCRMGT-AITVTGTNFCPPNYDLPY--GGWCNTTRPHFDMSQPAWENIGIYSAGIVPILYQQVKCWRSGGVRFTITGLNYFELVLVTNMAGSGSIASMSVKGSSTGWIQMSRNWGANWQCLAGLAGQALSFTVTSTGGQTIVFDSVVPAGWSFGQTFS 242          
BLAST of FC930999 vs. ExPASy Swiss-Prot
Match: EXP19_ORYSJ (Expansin-A19 OS=Oryza sativa subsp. japonica GN=EXPA19 PE=2 SV=1)

HSP 1 Score: 275.404 bits (703), Expect = 2.118e-73
Identity = 128/223 (57.40%), Postives = 156/223 (69.96%), Query Frame = 2
Query:    2 WQSAHSTFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGD--PQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKGANTQWLSMSRNWGQNWQSNAQLVGQALSFRVTGSDRRTSTSWNVAPANWQFGQTFS 664
            W    +TFYGG+D SGTMGGACGYGNLY QGYG+N AALST LFN+G SCG C+ + C     P WC  G  AI +T TN+CPPN+  P   GGWCN  RPHFD++ P +  +  Y AGI+P+ Y++V C + GG+RFTINGF YF LVLVTN+AG+G I  +SVKG+ T W+ M+RNWG NWQ  A L GQALSF VT +  +T    +  PA W FGQTFS
Sbjct:   23 WLPGTATFYGGADGSGTMGGACGYGNLYDQGYGINNAALSTPLFNDGASCGQCYLIICDYSKAPDWCKLGK-AITVTGTNYCPPNYDLPY--GGWCNATRPHFDMSQPAWENIGIYNAGIIPILYQQVKCWRYGGVRFTINGFNYFELVLVTNMAGSGSIASMSVKGSCTGWIQMTRNWGANWQCLAGLAGQALSFNVTSTGGQTIVFDDAVPAGWSFGQTFS 242          
BLAST of FC930999 vs. ExPASy Swiss-Prot
Match: EXP13_ARATH (Expansin-A13 OS=Arabidopsis thaliana GN=EXPA13 PE=2 SV=2)

HSP 1 Score: 270.781 bits (691), Expect = 5.218e-72
Identity = 124/225 (55.11%), Postives = 154/225 (68.44%), Query Frame = 2
Query:    2 WQSAHSTFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKGANTQWLSMSRNWGQNWQSNAQLVGQALSFRVTGSDRRTSTSWNVAPANWQFGQTFSGKNF 676
            W+ A +T+Y  ++    +GGACGYG+L   GYG+ T  LS  LF  G  CGACFEL+C  D +WC PG  +I++TATNFC PN+    D GG CNPP  HF L +  F K+A ++AG +PV YRR+ CRK G +RFT++G   F  VL+TNVAG+GDI  V +KG+ T WL M RNWGQNW  NA L  QALSF VT SDR T TS+NV+P NW +GQTF GK F
Sbjct:   40 WRPARATYYAATNPRDAVGGACGYGDLVKSGYGMATVGLSETLFERGQICGACFELRCVDDLRWCIPGT-SIILTATNFCAPNYGFDPDGGGHCNPPNKHFVLPIEAFEKIAIWKAGNMPVQYRRINCRKEGSMRFTVDGGGIFISVLITNVAGSGDIAAVKIKGSRTGWLPMGRNWGQNWHINADLRNQALSFEVTSSDRSTVTSYNVSPKNWNYGQTFEGKQF 263          
BLAST of FC930999 vs. ExPASy Swiss-Prot
Match: EXP24_ARATH (Expansin-A24 OS=Arabidopsis thaliana GN=EXPA24 PE=2 SV=2)

HSP 1 Score: 267.7 bits (683), Expect = 4.417e-71
Identity = 123/224 (54.91%), Postives = 158/224 (70.54%), Query Frame = 2
Query:    2 WQSAHSTFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKGANTQWLSMSRNWGQNWQSNAQLVGQALSFRVTGSDRRTSTSWNVAPANWQF-GQTFSGK 670
            W    +TFYG  +   T  GACGYG+L+ QGYG+ TAALSTALFNNG  CGAC+E+ C   PQWC PG+  I ITATNFCPP+F +P+DN  WCNPP+ HFDL+ PMFLK+A+Y+AG+VPV +RRVPC K GG++F I G  +F ++L  NV GAG +  + +KG  TQW++M +NWGQ W +   L GQ LSFR+T SD       +V P +W+  GQ+F GK
Sbjct:   90 WGHGRATFYGDINGGETQQGACGYGDLHKQGYGLETAALSTALFNNGSRCGACYEIMCEHAPQWCLPGS--IKITATNFCPPDFTKPNDN--WCNPPQKHFDLSQPMFLKIAKYKAGVVPVKFRRVPCAKIGGVKFEIKGNPHFLMILPYNVGGAGAVRAMQIKGTRTQWIAMKKNWGQIWSTGVVLTGQCLSFRLTTSDGVMKEFIDVTPPDWKCNGQSFDGK 309          
The following BLAST results are available for this feature:
BLAST of FC930999 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 96
Match NameE-valueIdentityDescription
EXP22_ARATH2.418e-7758.74Expansin-A22 OS=Arabidopsis thaliana GN=EXPA22 PE=... [more]
EXP26_ARATH7.036e-7758.30Putative expansin-A26 OS=Arabidopsis thaliana GN=E... [more]
EXP18_ARATH3.861e-7557.14Expansin-A18 OS=Arabidopsis thaliana GN=EXPA18 PE=... [more]
EXP23_ARATH6.585e-7556.50Expansin-A23 OS=Arabidopsis thaliana GN=EXPA23 PE=... [more]
EXP25_ARATH1.123e-7456.95Expansin-A25 OS=Arabidopsis thaliana GN=EXPA25 PE=... [more]
EXPA7_ARATH4.268e-7456.58Expansin-A7 OS=Arabidopsis thaliana GN=EXPA7 PE=2 ... [more]
EXP18_ORYSJ9.509e-7458.74Expansin-A18 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP19_ORYSJ2.118e-7357.40Expansin-A19 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP13_ARATH5.218e-7255.11Expansin-A13 OS=Arabidopsis thaliana GN=EXPA13 PE=... [more]
EXP24_ARATH4.417e-7154.91Expansin-A24 OS=Arabidopsis thaliana GN=EXPA24 PE=... [more]

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Properties
Property NameValue
Genbank descriptionC34100C11EF PostHarvP1 Citrus clementina cDNA clone C34100C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930999 ID=FC930999; Name=FC930999; organism=Citrus clementina; type=EST; length=719bp
CTGGCAATCGGCCCACTCCACTTTTTACGGTGGCAGCGACGCTTCCGGCA
CTATGGGTGGTGCTTGTGGGTACGGGAATCTGTACAGCCAGGGCTATGGA
GTGAACACGGCGGCTCTCAGTACGGCGCTGTTCAACAACGGCTTGAGCTG
CGGCGCGTGCTTCGAGTTAAAGTGCGGCGGCGACCCGCAATGGTGTAACC
CGGGTAACCCGGCCATTCTGATCACGGCGACCAACTTTTGCCCCCCGAAC
TTCGCTCAGCCCTCCGATAATGGCGGGTGGTGCAACCCTCCTCGCCCTCA
TTTCGATCTGGCCATGCCTATGTTCCTCAAGCTCGCCCAGTACCGCGCTG
GTATCGTCCCCGTTTCTTACCGCAGGGTGCCCTGCAGAAAGCGAGGCGGA
ATCAGATTCACAATTAACGGTTTCCGTTACTTCAACTTGGTCTTGGTCAC
CAACGTCGCGGGCGCAGGGGATATCGTGCGCGTGAGCGTGAAAGGGGCCA
ACACCCAATGGCTGAGCATGAGCCGCAACTGGGGACAAAACTGGCAATCC
AACGCTCAGCTCGTGGGCCAGGCACTTTCGTTTAGAGTCACGGGCAGTGA
CAGAAGGACCTCAACCTCTTGGAACGTGGCGCCAGCGAATTGGCAGTTCG
GTCAAACCTTTTCGGGAAAGAATTTCCGCGTCTAGTGATATTTAATCTTT
TTTCACATTTTCATGTTTC
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