FC931000

Overview
NameFC931000
Unique NameFC931000
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length735
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14343 contig Ccv1_Contig14343:260..994. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931000 vs. ExPASy Swiss-Prot
Match: FKBP6_DICDI (FK506-binding protein 6 OS=Dictyostelium discoideum GN=fkbp6 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.774e-14
Identity = 65/240 (27.08%), Postives = 107/240 (44.58%), Query Frame = 3
Query:    3 ILKEGDAFERPNEGAFVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTXXXXXXXXXXXXQGNTLFKAGKYARASKRYEKAVKYI---EYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL-DSRNVKALYRRAQAYIQMADLDLAEFDIRKHLRL 710
            I+KEG   E P   + V V   G L +  +F      +    F F+   + VID ++ ++ TMK  + A +     YAFG          +PPN +V Y+++L+S++ +   +  N              GN  F+   Y ++ + Y K++  +   E      + E K  K   +   LN A+C +KLKD K+    C K+L+L  +   K  YR  QAY      D A+  + + +RL
Sbjct:  111 IIKEGYG-EIPPPRSIVTVHYEGYLSNQVLF--DSSVQRNSPFTFQMGTKSVIDAIELSISTMKVGQEAEIVTTQRYAFGKLGLPP---FIPPNVSVIYKIKLLSYKLKSNDFT-NFESLINKSKEEKEIGNQFFQKSNYKKSIRHYVKSIWILNDPEQTLGLNEMENKLLKDTLIILYLNLASCNIKLKDGKRGISNCEKILELGGNTTAKFYYRMGQAYSLNKQYDSAKRCLVQAIRL 343          
BLAST of FC931000 vs. ExPASy Swiss-Prot
Match: FKBP8_HUMAN (FK506-binding protein 8 OS=Homo sapiens GN=FKBP8 PE=1 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.150e-13
Identity = 66/231 (28.57%), Postives = 104/231 (45.02%), Query Frame = 3
Query:   30 RPNEGAFVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTXXXXXXXXXXXXQGNTLFKAGKYARASKRYEKAVKYI----EYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIRKHLRL 710
            RP +G  V V L   L++GT        +EE    F   +  VI  LD +V  M   E A++T   +Y +G    Q     +PP++ +  EV L +     +   +               GN  ++   +  A+  Y+ A+K I    + D +F  EE+ Q   LKV C  N AA +LKL  Y+ A + C+ VL+    N+KAL+R+ +   Q  +   A   +R  L+L
Sbjct:  116 RPVKGQVVTVHLQTSLENGT------RVQEEPELVFTLGDCDVIQALDLSVPLMDVGETAMVTADSKYCYGP---QGRSPYIPPHAALCLEVTLKTAVDGPDLEMLTGQERVALANRKRECGNAHYQRADFVLAANSYDLAIKAITSSAKVDMTF--EEEAQLLQLKVKCLNNLAASQLKLDHYRAALRSCSLVLEHQPDNIKALFRKGKVLAQQGEYSEAIPILRAALKL 335          
BLAST of FC931000 vs. ExPASy Swiss-Prot
Match: PPID_BOVIN (40 kDa peptidyl-prolyl cis-trans isomerase OS=Bos taurus GN=PPID PE=1 SV=6)

HSP 1 Score: 75.8702 bits (185), Expect = 2.562e-13
Identity = 38/103 (36.89%), Postives = 62/103 (60.19%), Query Frame = 3
Query:  393 GNTLFKAGKYARASKRYEKAVKYIEYDTSFG-DEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIRK 698
            GNT FK+  +  A K+Y K ++Y+E   +   D +  + + + ++C LN  ACKLK+ D++ A   C + L++D  N KALYRRAQ +  + + D A  D++K
Sbjct:  230 GNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKK 332          
BLAST of FC931000 vs. ExPASy Swiss-Prot
Match: PPID_RHIOR (Peptidyl-prolyl cis-trans isomerase D OS=Rhizopus oryzae GN=cyp12 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.661e-12
Identity = 40/112 (35.71%), Postives = 63/112 (56.25%), Query Frame = 3
Query:  393 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAK----ALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNV------KALYRRAQAYIQMADLDLAEFDIRK 698
            GNT FK G +A A+K+Y KA++Y+    +F + + K+ +    A+K+ C LN + C LKL +Y +  K+ T VL+ DS+ +      KA +RR  A +   D + A  D  K
Sbjct:  215 GNTYFKKGDHANAAKKYLKAIRYLNEKPAFDENDPKELEGKFAAIKIPCYLNRSMCALKLGEYSECVKVTTTVLEYDSKYLKPTDITKAYFRRGSAKMNTRDFEGAIEDFEK 326          
BLAST of FC931000 vs. ExPASy Swiss-Prot
Match: PPID_MOUSE (40 kDa peptidyl-prolyl cis-trans isomerase OS=Mus musculus GN=Ppid PE=1 SV=3)

HSP 1 Score: 72.0182 bits (175), Expect = 3.699e-12
Identity = 34/103 (33.01%), Postives = 64/103 (62.14%), Query Frame = 3
Query:  393 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDE-EKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIRK 698
            GNT FK+  +  A K+Y K ++Y++   +  ++ ++ + + + ++C LN  ACKLK+ +++ A   C + L++D  N KALYR+AQ +  + + D A  D++K
Sbjct:  230 GNTFFKSQNWEMAIKKYAKVLRYVDSSKAVIEKADRSRLQPIALSCVLNIGACKLKMSNWQGAIDSCLEALEMDPSNTKALYRKAQGWQGLKEYDQALADLKK 332          
BLAST of FC931000 vs. ExPASy Swiss-Prot
Match: PPID_HUMAN (40 kDa peptidyl-prolyl cis-trans isomerase OS=Homo sapiens GN=PPID PE=1 SV=3)

HSP 1 Score: 71.2478 bits (173), Expect = 6.310e-12
Identity = 35/103 (33.98%), Postives = 63/103 (61.17%), Query Frame = 3
Query:  393 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDE-EKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIRK 698
            GNT FK+  +  A K+Y + ++Y++   +  +  ++ + + + ++C LN  ACKLK+ +++ A   C + L+LD  N KALYRRAQ +  + + D A  D++K
Sbjct:  230 GNTFFKSQNWEMAIKKYAEVLRYVDSSKAVIETADRAKLQPIALSCVLNIGACKLKMSNWQGAIDSCLEALELDPSNTKALYRRAQGWQGLKEYDQALADLKK 332          
BLAST of FC931000 vs. ExPASy Swiss-Prot
Match: PPID_RAT (40 kDa peptidyl-prolyl cis-trans isomerase OS=Rattus norvegicus GN=Ppid PE=1 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 1.076e-11
Identity = 39/105 (37.14%), Postives = 62/105 (59.05%), Query Frame = 3
Query:  393 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALK---VACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIRK 698
            GNT FK+  +  A K+Y K ++Y+  D+S    EK     L+   ++C LN  ACKLK+ +++ A   C + L++D  N KALYR+AQ +  + + D A  D++K
Sbjct:  230 GNTFFKSQNWEMAIKKYAKVLRYL--DSSKAVIEKADVSRLQPIALSCVLNIGACKLKMSNWQGAIDSCLEALEMDPSNTKALYRKAQGWQGLKEYDQALADLKK 332          
BLAST of FC931000 vs. ExPASy Swiss-Prot
Match: TOM34_RAT (Mitochondrial import receptor subunit TOM34 OS=Rattus norvegicus GN=Tomm34 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.398e-11
Identity = 40/107 (37.38%), Postives = 58/107 (54.21%), Query Frame = 3
Query:  390 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIRKHLRL 710
            +GN L K G + +A ++Y +++ +                +L+ A   N A C L LK YK+AEK CT+ L LD +NVKA YRRAQAY  + D   +  DI   L++
Sbjct:  199 EGNELVKKGNHKKAIEKYSESLLF---------------SSLESATYSNRALCHLVLKQYKEAEKDCTEALKLDGKNVKAFYRRAQAYKALKDYKSSLADISSLLQI 290          
BLAST of FC931000 vs. ExPASy Swiss-Prot
Match: FKBP3_RABIT (FK506-binding protein 3 OS=Oryctolagus cuniculus GN=FKBP3 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 4.090e-11
Identity = 43/112 (38.39%), Postives = 59/112 (52.68%), Query Frame = 3
Query:    3 ILKEGDAFERPNEGAFVKVKLIGKLQDGTVF-----VKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 323
            +LK+GD    P +G  V     G LQDGTVF           +  +   FK    +VI G D A++TM K E A L I PE+A+G  +  Q  A +PPN+ + +EVELV  +
Sbjct:  115 VLKKGDKTNFPKKGDVVHCWYTGTLQDGTVFDTNIQTSSKKKKNAKPLSFKVGVGKVIRGWDEALLTMSKGEKARLEIEPEWAYG--KKGQPDAKIPPNAKLIFEVELVDID 224          
BLAST of FC931000 vs. ExPASy Swiss-Prot
Match: FKBP3_HUMAN (FK506-binding protein 3 OS=Homo sapiens GN=FKBP3 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.090e-11
Identity = 43/112 (38.39%), Postives = 59/112 (52.68%), Query Frame = 3
Query:    3 ILKEGDAFERPNEGAFVKVKLIGKLQDGTVF-----VKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 323
            +LK+GD    P +G  V     G LQDGTVF           +  +   FK    +VI G D A++TM K E A L I PE+A+G  +  Q  A +PPN+ + +EVELV  +
Sbjct:  115 VLKKGDKTNFPKKGDVVHCWYTGTLQDGTVFDTNIQTSAKKKKNAKPLSFKVGVGKVIRGWDEALLTMSKGEKARLEIEPEWAYG--KKGQPDAKIPPNAKLTFEVELVDID 224          
The following BLAST results are available for this feature:
BLAST of FC931000 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
FKBP6_DICDI1.774e-1427.08FK506-binding protein 6 OS=Dictyostelium discoideu... [more]
FKBP8_HUMAN1.150e-1328.57FK506-binding protein 8 OS=Homo sapiens GN=FKBP8 P... [more]
PPID_BOVIN2.562e-1336.8940 kDa peptidyl-prolyl cis-trans isomerase OS=Bos ... [more]
PPID_RHIOR1.661e-1235.71Peptidyl-prolyl cis-trans isomerase D OS=Rhizopus ... [more]
PPID_MOUSE3.699e-1233.0140 kDa peptidyl-prolyl cis-trans isomerase OS=Mus ... [more]
PPID_HUMAN6.310e-1233.9840 kDa peptidyl-prolyl cis-trans isomerase OS=Homo... [more]
PPID_RAT1.076e-1137.1440 kDa peptidyl-prolyl cis-trans isomerase OS=Ratt... [more]
TOM34_RAT2.398e-1137.38Mitochondrial import receptor subunit TOM34 OS=Rat... [more]
FKBP3_RABIT4.090e-1138.39FK506-binding protein 3 OS=Oryctolagus cuniculus G... [more]
FKBP3_HUMAN4.090e-1138.39FK506-binding protein 3 OS=Homo sapiens GN=FKBP3 P... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34100C12EF PostHarvP1 Citrus clementina cDNA clone C34100C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931000 ID=FC931000; Name=FC931000; organism=Citrus clementina; type=EST; length=735bp
AGATTTTGAAAGAAGGGGATGCGTTTGAGCGCCCTAATGAAGGAGCTTTT
GTCAAAGTCAAATTGATTGGGAAGCTGCAAGATGGTACCGTGTTTGTGAA
AAAGGGTCATAGTGAGGAAGAGCAGCTGTTTGAGTTTAAGACAGATGAAG
AGCAAGTCATTGATGGGCTTGATAGAGCGGTGATTACAATGAAGAAAAAT
GAGGTTGCACTGCTGACAATAGCACCAGAGTATGCTTTTGGCTCGGCTGA
GTCGCAGCAGGAGCTGGCTGTAGTACCTCCTAATTCAACTGTGCATTATG
AGGTTGAGCTGGTGTCCTTTGAAAAGGAGAAGGAATCGTGGGACATGAAT
ACTGAGGAAAAGATTGAAGCCGCGGGGAAGAAGAAGGAACAAGGGAATAC
ATTGTTTAAGGCAGGCAAATATGCAAGAGCCTCAAAGAGATATGAGAAAG
CTGTCAAGTACATCGAGTATGATACTTCCTTTGGTGACGAAGAGAAAAAA
CAGGCAAAGGCATTGAAAGTTGCTTGCAATCTCAATAATGCTGCTTGCAA
ATTGAAACTCAAGGATTACAAGCAGGCAGAAAAATTATGCACCAAGGTGC
TTGACTTGGATAGTAGAAATGTGAAAGCTCTGTACAGAAGGGCTCAGGCA
TACATTCAGATGGCAGATTTAGATTTGGCAGAGTTTGATATCAGAAAGCA
CTTGAGATTGATCCTGATACAGGGATGTCAAGTTG
back to top