FC931007

Overview
NameFC931007
Unique NameFC931007
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length747
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig777 contig Ccv1_Contig777:216..961. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC931007 vs. ExPASy Swiss-Prot
Match: RB11A_RAT (Ras-related protein Rab-11A OS=Rattus norvegicus GN=Rab11a PE=1 SV=3)

HSP 1 Score: 278.87 bits (712), Expect = 2.054e-74
Identity = 131/175 (74.86%), Postives = 159/175 (90.86%), Query Frame = 3 
Query:   51 DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKR 575
            D+EYDYLFK+VLIGDSGVGKSNLLSRFT+NEFNLESKSTIGVEFATRS+++D K +KAQIWDTAGQERYRAITSAYYRGAVGALLVYD+ +H T++NV RWL+ELR+H D NI++ML+GNK+DLRHL AV T++ +AFAE+  L F+ETSALD+TNVE AF  +LT+IY+IVS++
Sbjct:    5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQK 179
[Close]
BLAST of FC931007 vs. ExPASy Swiss-Prot
Match: RB11A_RABIT (Ras-related protein Rab-11A OS=Oryctolagus cuniculus GN=RAB11A PE=2 SV=3)

HSP 1 Score: 278.87 bits (712), Expect = 2.054e-74
Identity = 131/175 (74.86%), Postives = 159/175 (90.86%), Query Frame = 3 
Query:   51 DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKR 575
            D+EYDYLFK+VLIGDSGVGKSNLLSRFT+NEFNLESKSTIGVEFATRS+++D K +KAQIWDTAGQERYRAITSAYYRGAVGALLVYD+ +H T++NV RWL+ELR+H D NI++ML+GNK+DLRHL AV T++ +AFAE+  L F+ETSALD+TNVE AF  +LT+IY+IVS++
Sbjct:    5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQK 179
[Close]
BLAST of FC931007 vs. ExPASy Swiss-Prot
Match: RB11A_PONAB (Ras-related protein Rab-11A OS=Pongo abelii GN=RAB11A PE=2 SV=3)

HSP 1 Score: 278.87 bits (712), Expect = 2.054e-74
Identity = 131/175 (74.86%), Postives = 159/175 (90.86%), Query Frame = 3 
Query:   51 DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKR 575
            D+EYDYLFK+VLIGDSGVGKSNLLSRFT+NEFNLESKSTIGVEFATRS+++D K +KAQIWDTAGQERYRAITSAYYRGAVGALLVYD+ +H T++NV RWL+ELR+H D NI++ML+GNK+DLRHL AV T++ +AFAE+  L F+ETSALD+TNVE AF  +LT+IY+IVS++
Sbjct:    5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQK 179
[Close]
BLAST of FC931007 vs. ExPASy Swiss-Prot
Match: RB11A_PIG (Ras-related protein Rab-11A OS=Sus scrofa GN=RAB11A PE=2 SV=3)

HSP 1 Score: 278.87 bits (712), Expect = 2.054e-74
Identity = 131/175 (74.86%), Postives = 159/175 (90.86%), Query Frame = 3 
Query:   51 DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKR 575
            D+EYDYLFK+VLIGDSGVGKSNLLSRFT+NEFNLESKSTIGVEFATRS+++D K +KAQIWDTAGQERYRAITSAYYRGAVGALLVYD+ +H T++NV RWL+ELR+H D NI++ML+GNK+DLRHL AV T++ +AFAE+  L F+ETSALD+TNVE AF  +LT+IY+IVS++
Sbjct:    5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQK 179
[Close]
BLAST of FC931007 vs. ExPASy Swiss-Prot
Match: RB11A_MOUSE (Ras-related protein Rab-11A OS=Mus musculus GN=Rab11a PE=1 SV=3)

HSP 1 Score: 278.87 bits (712), Expect = 2.054e-74
Identity = 131/175 (74.86%), Postives = 159/175 (90.86%), Query Frame = 3 
Query:   51 DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKR 575
            D+EYDYLFK+VLIGDSGVGKSNLLSRFT+NEFNLESKSTIGVEFATRS+++D K +KAQIWDTAGQERYRAITSAYYRGAVGALLVYD+ +H T++NV RWL+ELR+H D NI++ML+GNK+DLRHL AV T++ +AFAE+  L F+ETSALD+TNVE AF  +LT+IY+IVS++
Sbjct:    5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQK 179
[Close]
BLAST of FC931007 vs. ExPASy Swiss-Prot
Match: RB11A_HUMAN (Ras-related protein Rab-11A OS=Homo sapiens GN=RAB11A PE=1 SV=3)

HSP 1 Score: 278.87 bits (712), Expect = 2.054e-74
Identity = 131/175 (74.86%), Postives = 159/175 (90.86%), Query Frame = 3 
Query:   51 DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKR 575
            D+EYDYLFK+VLIGDSGVGKSNLLSRFT+NEFNLESKSTIGVEFATRS+++D K +KAQIWDTAGQERYRAITSAYYRGAVGALLVYD+ +H T++NV RWL+ELR+H D NI++ML+GNK+DLRHL AV T++ +AFAE+  L F+ETSALD+TNVE AF  +LT+IY+IVS++
Sbjct:    5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQK 179
[Close]
BLAST of FC931007 vs. ExPASy Swiss-Prot
Match: RB11A_CHICK (Ras-related protein Rab-11A OS=Gallus gallus GN=RAB11A PE=2 SV=1)

HSP 1 Score: 278.87 bits (712), Expect = 2.054e-74
Identity = 131/175 (74.86%), Postives = 159/175 (90.86%), Query Frame = 3 
Query:   51 DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKR 575
            D+EYDYLFK+VLIGDSGVGKSNLLSRFT+NEFNLESKSTIGVEFATRS+++D K +KAQIWDTAGQERYRAITSAYYRGAVGALLVYD+ +H T++NV RWL+ELR+H D NI++ML+GNK+DLRHL AV T++ +AFAE+  L F+ETSALD+TNVE AF  +LT+IY+IVS++
Sbjct:    5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQK 179
[Close]
BLAST of FC931007 vs. ExPASy Swiss-Prot
Match: RB11A_CANFA (Ras-related protein Rab-11A OS=Canis familiaris GN=RAB11A PE=2 SV=3)

HSP 1 Score: 278.87 bits (712), Expect = 2.054e-74
Identity = 131/175 (74.86%), Postives = 159/175 (90.86%), Query Frame = 3 
Query:   51 DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKR 575
            D+EYDYLFK+VLIGDSGVGKSNLLSRFT+NEFNLESKSTIGVEFATRS+++D K +KAQIWDTAGQERYRAITSAYYRGAVGALLVYD+ +H T++NV RWL+ELR+H D NI++ML+GNK+DLRHL AV T++ +AFAE+  L F+ETSALD+TNVE AF  +LT+IY+IVS++
Sbjct:    5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQK 179
[Close]
BLAST of FC931007 vs. ExPASy Swiss-Prot
Match: RB11A_BOVIN (Ras-related protein Rab-11A OS=Bos taurus GN=RAB11A PE=2 SV=3)

HSP 1 Score: 277.715 bits (709), Expect = 4.576e-74
Identity = 131/175 (74.86%), Postives = 158/175 (90.29%), Query Frame = 3 
Query:   51 DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKR 575
            D+EYDYLFK+VLIGDSGVGKSNLLSRFT+NEFNLESKSTIGVEFATRS+++D K +KAQIWDTAGQERYRAITSAYYRGAVGALLVYD+ +H T++NV RWL+ELR+H D NI++ML+GNK+DLRHL AV T++ +AFAE+  L F+ETSALD TNVE AF  +LT+IY+IVS++
Sbjct:    5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDYTNVEAAFQTILTEIYRIVSQK 179
[Close]
BLAST of FC931007 vs. ExPASy Swiss-Prot
Match: RGP2_ORYSJ (Ras-related protein RGP2 OS=Oryza sativa subsp. japonica GN=RGP2 PE=2 SV=2)

HSP 1 Score: 276.559 bits (706), Expect = 1.019e-73
Identity = 133/211 (63.03%), Postives = 174/211 (82.46%), Query Frame = 3 
Query:   39 GYKPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAGSNGTAST-LPSKGETINVKDDSSVLKR 668
            G + D EY YLFK+VLIGDSGVGKSN+LSRFT+N F+L+SKSTIGVEFAT+SL+++ K +KAQIWDTAGQERYRAITSAYYRGAVGALLVYD+T+  +F NV RWLRELR+H D +I++M++GNK+DL HL AVS ++GKA AE+E L+F+ETSA++A NVE AF  ++T++Y IV+++A+ A     AS  LPS+G+TI++   +   KR
Sbjct:    2 GGRVDHEYSYLFKMVLIGDSGVGKSNILSRFTRNHFSLDSKSTIGVEFATKSLQMEGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQSFDNVHRWLRELRDHADSSIVIMMVGNKSDLIHLRAVSEDEGKALAEKEGLFFLETSAMEAVNVEEAFQTIITEVYGIVNRKALAAKEAAAASAPLPSQGKTISIDSAAGNTKR 212
The following BLAST results are available for this feature:
BLAST of FC931007 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RB11A_RAT2.054e-7474.86Ras-related protein Rab-11A OS=Rattus norvegicus G... [more]
RB11A_RABIT2.054e-7474.86Ras-related protein Rab-11A OS=Oryctolagus cunicul... [more]
RB11A_PONAB2.054e-7474.86Ras-related protein Rab-11A OS=Pongo abelii GN=RAB... [more]
RB11A_PIG2.054e-7474.86Ras-related protein Rab-11A OS=Sus scrofa GN=RAB11... [more]
RB11A_MOUSE2.054e-7474.86Ras-related protein Rab-11A OS=Mus musculus GN=Rab... [more]
RB11A_HUMAN2.054e-7474.86Ras-related protein Rab-11A OS=Homo sapiens GN=RAB... [more]
RB11A_CHICK2.054e-7474.86Ras-related protein Rab-11A OS=Gallus gallus GN=RA... [more]
RB11A_CANFA2.054e-7474.86Ras-related protein Rab-11A OS=Canis familiaris GN... [more]
RB11A_BOVIN4.576e-7474.86Ras-related protein Rab-11A OS=Bos taurus GN=RAB11... [more]
RGP2_ORYSJ1.019e-7363.03Ras-related protein RGP2 OS=Oryza sativa subsp. ja... [more]

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Properties
Property NameValue
Genbank descriptionC34100D07EF PostHarvP1 Citrus clementina cDNA clone C34100D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931007 ID=FC931007; Name=FC931007; organism=Citrus clementina; type=EST; length=747bp
ACAAGTGAACAGTGACACATACACCTATATAAATGGCGGGTTACAAGCCT
GATGAGGAGTATGATTACCTTTTCAAGTTGGTTTTGATTGGGGACTCAGG
CGTTGGTAAATCCAACTTGCTTTCGAGGTTTACAAAAAACGAGTTTAATT
TGGAATCAAAGTCTACTATTGGTGTTGAGTTCGCTACCAGGAGTTTGAGG
ATTGATAACAAGGTTGTCAAGGCTCAAATTTGGGACACTGCTGGCCAAGA
AAGGTACCGTGCAATTACAAGTGCTTACTACCGGGGTGCCGTTGGTGCTT
TGCTTGTATACGATGTAACACGACATGCTACATTTCAGAATGTTGGAAGG
TGGTTGAGGGAGTTAAGAGAGCACACAGATCCGAACATTATTGTCATGCT
CATTGGCAATAAGACAGATCTTCGACACCTTGTGGCTGTCTCAACTGAGG
ATGGGAAAGCTTTTGCTGAGCAGGAGTCTCTCTATTTCATGGAGACTTCC
GCATTGGATGCAACCAATGTGGAAAATGCTTTTACTGAGGTTCTTACTCA
GATATACAAGATCGTGAGCAAGAGAGCAGTTGAAGCAGGCAGCAATGGAA
CTGCTTCCACACTTCCATCTAAAGGAGAGACGATAAATGTCAAAGACGAT
TCATCCGTTCTAAAGAGAAATTGGATGCTGCTCAACTAGGGAGATATATT
CGGTTACCAGATTTTACAGCATTGGGCAATTTACTTGTACATGATCA
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