FC931007

Overview
NameFC931007
Unique NameFC931007
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length747
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig777 contig Ccv1_Contig777:216..961. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931007 vs. ExPASy Swiss-Prot
Match: RAB14_HUMAN (Ras-related protein Rab-14 OS=Homo sapiens GN=RAB14 PE=1 SV=4)

HSP 1 Score: 182.57 bits (462), Expect = 2.003e-45
Identity = 85/175 (48.57%), Postives = 121/175 (69.14%), Query Frame = 3
Query:   60 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVE 584
            Y Y+FK ++IGD GVGKS LL +FT+ +F  +   TIGVEF TR + +  + +K QIWDTAGQER+RA+T +YYRGA GAL+VYD+TR +T+ ++  WL + R  T+PN +++LIGNK DL     V+ E+ K FAE+  L F+E SA    NVE+AF E   +IY+ +   +++
Sbjct:    8 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNIQDGSLD 182          
BLAST of FC931007 vs. ExPASy Swiss-Prot
Match: RAB14_CHICK (Ras-related protein Rab-14 OS=Gallus gallus GN=RAB14 PE=2 SV=3)

HSP 1 Score: 182.57 bits (462), Expect = 2.003e-45
Identity = 85/175 (48.57%), Postives = 121/175 (69.14%), Query Frame = 3
Query:   60 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVE 584
            Y Y+FK ++IGD GVGKS LL +FT+ +F  +   TIGVEF TR + +  + +K QIWDTAGQER+RA+T +YYRGA GAL+VYD+TR +T+ ++  WL + R  T+PN +++LIGNK DL     V+ E+ K FAE+  L F+E SA    NVE+AF E   +IY+ +   +++
Sbjct:    8 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNIQDGSLD 182          
BLAST of FC931007 vs. ExPASy Swiss-Prot
Match: YPT1_PHYIN (Ras-like GTP-binding protein YPT1 OS=Phytophthora infestans GN=YPT1 PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 9.942e-45
Identity = 98/193 (50.78%), Postives = 127/193 (65.80%), Query Frame = 3
Query:   57 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAV--EAGSNGT-ASTLPSKG 626
            EYDYLFKL+LIGDSGVGKS LL RF  + +     STIGV+F  R++ +D K +K QIWDTAGQER+R ITS+YYRGA G ++VYDVT   +F NV +WL E+  +   N+  +L+GNK+DL     VST+  K FAE   + F+ETSA +A NVE AF  +  QI K ++   V  +AG   T    +PS G
Sbjct:    4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLHEIDRYACENVNKLLVGNKSDLTAKRVVSTDAAKEFAESLGIEFLETSAKNAANVEKAFMMMAAQIKKRMANAPVAPKAGVKLTPGQQVPSNG 196          
BLAST of FC931007 vs. ExPASy Swiss-Prot
Match: RIC1_ORYSJ (Ras-related protein RIC1 OS=Oryza sativa subsp. japonica GN=RIC1 PE=2 SV=2)

HSP 1 Score: 180.259 bits (456), Expect = 9.942e-45
Identity = 96/194 (49.48%), Postives = 130/194 (67.01%), Query Frame = 3
Query:   57 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAGSNGT-ASTLPSKGETI 635
            EYDYLFKL+LIGDSGVGKS LL RF  + +     STIGV+F  R++  D K +K QIWDTAGQER+R ITS+YYRGA G ++VYDVT   +F NV +WL E+  +   N+  +L+GNK DL     VS E GKA A++  + F+ETSA DATNVE AF   +T   +I ++ A +  +N +  +T+  +G+ +
Sbjct:    4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLAENRVVSYEAGKALADEIGIPFLETSAKDATNVEKAF---MTMAGEIKNRMASQPATNASKPATVQMRGQPV 194          
BLAST of FC931007 vs. ExPASy Swiss-Prot
Match: RAB8B_RAT (Ras-related protein Rab-8B OS=Rattus norvegicus GN=Rab8b PE=1 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.298e-44
Identity = 86/180 (47.78%), Postives = 123/180 (68.33%), Query Frame = 3
Query:   60 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAGSNG 599
            YDYLFKL+LIGDSGVGK+ LL RF+++ FN    STIG++F  R++ +D K +K QIWDTAGQER+R IT+AYYRGA+G +LVYD+T   +F N+  W+R + EH   ++  M++GNK D+     VS E G+  A    + F+ETSA  +TNVE AF  +   I   ++++  ++ S+G
Sbjct:    5 YDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSTNVEEAFFTLARDIMTKLNRKMNDSNSSG 184          
BLAST of FC931007 vs. ExPASy Swiss-Prot
Match: RAB8B_MOUSE (Ras-related protein Rab-8B OS=Mus musculus GN=Rab8b PE=1 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.298e-44
Identity = 86/180 (47.78%), Postives = 123/180 (68.33%), Query Frame = 3
Query:   60 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAGSNG 599
            YDYLFKL+LIGDSGVGK+ LL RF+++ FN    STIG++F  R++ +D K +K QIWDTAGQER+R IT+AYYRGA+G +LVYD+T   +F N+  W+R + EH   ++  M++GNK D+     VS E G+  A    + F+ETSA  +TNVE AF  +   I   ++++  ++ S+G
Sbjct:    5 YDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSTNVEEAFFTLARDIMTKLNRKMNDSNSSG 184          
BLAST of FC931007 vs. ExPASy Swiss-Prot
Match: RAB8B_PONAB (Ras-related protein Rab-8B OS=Pongo abelii GN=RAB8B PE=2 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.893e-44
Identity = 86/180 (47.78%), Postives = 122/180 (67.78%), Query Frame = 3
Query:   60 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAGSNG 599
            YDYLFKL+LIGDSGVGK+ LL RF+++ FN    STIG++F  R++ +D K +K QIWDTAGQER+R IT+AYYRGA+G +LVYD+T   +F N+  W+R + EH   ++  M++GNK D+     VS E G+  A    + F+ETSA  +TNVE AF  +   I   ++++  ++ S G
Sbjct:    5 YDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSTNVEEAFFTLARDIMTKLNRKMNDSNSAG 184          
BLAST of FC931007 vs. ExPASy Swiss-Prot
Match: RAB1B_BOVIN (Ras-related protein Rab-1B OS=Bos taurus GN=RAB1B PE=2 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.893e-44
Identity = 96/204 (47.06%), Postives = 129/204 (63.24%), Query Frame = 3
Query:   57 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAGSNGTASTLPSKGETINVKDDSSVLKR 668
            EYDYLFKL+LIGDSGVGKS LL RF  + +     STIGV+F  R++ +D K +K QIWDTAGQER+R ITS+YYRGA G ++VYDVT   ++ NV +WL+E+  +   N+  +L+GNK+DL     V     K FA+   + F+ETSA +ATNVE AF  +  +I K +   A             S GE  N+K DS+ +K+
Sbjct:    4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAA------------SGGERPNLKIDSTPVKQ 195          
BLAST of FC931007 vs. ExPASy Swiss-Prot
Match: RAB1_DISOM (Ras-related protein ORAB-1 OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 3.778e-44
Identity = 91/179 (50.84%), Postives = 118/179 (65.92%), Query Frame = 3
Query:   57 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAGS 593
            EYDYLFKL+LIGDSGVGKS LL RF  + +     STIGV+F  R++ +D K +K QIWDTAGQER+R ITS+YYRGA G ++VYDVT   +F NV +WL+E+  +   N+  +L+GNK DL     V     K FA+   + F+ETSA +ATNVE AF  +  +I K +   A   GS
Sbjct:    4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGATSGGS 182          
BLAST of FC931007 vs. ExPASy Swiss-Prot
Match: RAB1B_PONAB (Ras-related protein Rab-1B OS=Pongo abelii GN=RAB1B PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 3.778e-44
Identity = 96/203 (47.29%), Postives = 128/203 (63.05%), Query Frame = 3
Query:   57 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAGSNGTASTLPSKGETINVKDDSSVLK 665
            EYDYLFKL+LIGDSGVGKS LL RF  + +     STIGV+F  R++ +D K +K QIWDTAGQER+R ITS+YYRGA G ++VYDVT   ++ NV +WL+E+  +   N+  +L+GNK+DL     V     K FA+   + F+ETSA +ATNVE AF  +  +I K +   A             S GE  N+K DS+ +K
Sbjct:    4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAA------------SGGERPNLKIDSTPVK 194          
The following BLAST results are available for this feature:
BLAST of FC931007 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB14_HUMAN2.003e-4548.57Ras-related protein Rab-14 OS=Homo sapiens GN=RAB1... [more]
RAB14_CHICK2.003e-4548.57Ras-related protein Rab-14 OS=Gallus gallus GN=RAB... [more]
YPT1_PHYIN9.942e-4550.78Ras-like GTP-binding protein YPT1 OS=Phytophthora ... [more]
RIC1_ORYSJ9.942e-4549.48Ras-related protein RIC1 OS=Oryza sativa subsp. ja... [more]
RAB8B_RAT1.298e-4447.78Ras-related protein Rab-8B OS=Rattus norvegicus GN... [more]
RAB8B_MOUSE1.298e-4447.78Ras-related protein Rab-8B OS=Mus musculus GN=Rab8... [more]
RAB8B_PONAB2.893e-4447.78Ras-related protein Rab-8B OS=Pongo abelii GN=RAB8... [more]
RAB1B_BOVIN2.893e-4447.06Ras-related protein Rab-1B OS=Bos taurus GN=RAB1B ... [more]
RAB1_DISOM3.778e-4450.84Ras-related protein ORAB-1 OS=Discopyge ommata PE=... [more]
RAB1B_PONAB3.778e-4447.29Ras-related protein Rab-1B OS=Pongo abelii GN=RAB1... [more]

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Properties
Property NameValue
Genbank descriptionC34100D07EF PostHarvP1 Citrus clementina cDNA clone C34100D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931007 ID=FC931007; Name=FC931007; organism=Citrus clementina; type=EST; length=747bp
ACAAGTGAACAGTGACACATACACCTATATAAATGGCGGGTTACAAGCCT
GATGAGGAGTATGATTACCTTTTCAAGTTGGTTTTGATTGGGGACTCAGG
CGTTGGTAAATCCAACTTGCTTTCGAGGTTTACAAAAAACGAGTTTAATT
TGGAATCAAAGTCTACTATTGGTGTTGAGTTCGCTACCAGGAGTTTGAGG
ATTGATAACAAGGTTGTCAAGGCTCAAATTTGGGACACTGCTGGCCAAGA
AAGGTACCGTGCAATTACAAGTGCTTACTACCGGGGTGCCGTTGGTGCTT
TGCTTGTATACGATGTAACACGACATGCTACATTTCAGAATGTTGGAAGG
TGGTTGAGGGAGTTAAGAGAGCACACAGATCCGAACATTATTGTCATGCT
CATTGGCAATAAGACAGATCTTCGACACCTTGTGGCTGTCTCAACTGAGG
ATGGGAAAGCTTTTGCTGAGCAGGAGTCTCTCTATTTCATGGAGACTTCC
GCATTGGATGCAACCAATGTGGAAAATGCTTTTACTGAGGTTCTTACTCA
GATATACAAGATCGTGAGCAAGAGAGCAGTTGAAGCAGGCAGCAATGGAA
CTGCTTCCACACTTCCATCTAAAGGAGAGACGATAAATGTCAAAGACGAT
TCATCCGTTCTAAAGAGAAATTGGATGCTGCTCAACTAGGGAGATATATT
CGGTTACCAGATTTTACAGCATTGGGCAATTTACTTGTACATGATCA
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