FC931011

Overview
NameFC931011
Unique NameFC931011
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length495
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931011_ssr444 microsatellite FC931011_ssr444:444..461. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of FC931011 vs. ExPASy Swiss-Prot
Match: CIRBP_HUMAN (Cold-inducible RNA-binding protein OS=Homo sapiens GN=CIRBP PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.203e-17
Identity = 37/76 (48.68%), Postives = 59/76 (77.63%), Query Frame = 3
Query:  150 KLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVNYA 377
            KLFVGG+S++ ++ SL + F+KYG ++E  ++ DRET RSRGFGFVTF  +++A  A+ A++G+ + GR++RV+ A
Sbjct:    7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82          
BLAST of FC931011 vs. ExPASy Swiss-Prot
Match: ROC3_NICSY (28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 2.877e-17
Identity = 42/81 (51.85%), Postives = 58/81 (71.60%), Query Frame = 3
Query:  150 KLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVNYAADRNR 392
            +++VG I +++DD  L + F+++G V  AR++ DRE+GRSRGFGFVT S+  E S AI  LDGQ L GR +RVN A +R R
Sbjct:  192 RIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTIRVNAAEERPR 272          

HSP 2 Score: 81.2629 bits (199), Expect = 2.693e-15
Identity = 41/80 (51.25%), Postives = 53/80 (66.25%), Query Frame = 3
Query:  147 SKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVNYAADR 386
            +KLFVG + Y++D   L + F + G V  A +I +RET RSRGFGFVT STVEEA  A++     DL+GR + VN AA R
Sbjct:   97 AKLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAVELYSQYDLNGRLLTVNKAAPR 176          
BLAST of FC931011 vs. ExPASy Swiss-Prot
Match: ROC1_NICSY (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 3.758e-17
Identity = 38/82 (46.34%), Postives = 65/82 (79.27%), Query Frame = 3
Query:  141 SSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVNYAADR 386
            SS++++VG +++ +D ++L   F++ G V +A+++ DR++GRSRGFGFVT+S+ EE ++AI++LDG DL+GR +RV+ A  R
Sbjct:  186 SSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAEAR 267          

HSP 2 Score: 72.7886 bits (177), Expect = 9.578e-13
Identity = 35/74 (47.30%), Postives = 48/74 (64.86%), Query Frame = 3
Query:  150 KLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVN 371
            K+FVG + ++ D  +L E F + G V    +I D+ TGRSRGFGFVT S+ EE  +A Q  +G +L GR +RVN
Sbjct:   88 KIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVN 161          
BLAST of FC931011 vs. ExPASy Swiss-Prot
Match: ROC1_NICPL (30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 3.758e-17
Identity = 38/82 (46.34%), Postives = 65/82 (79.27%), Query Frame = 3
Query:  141 SSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVNYAADR 386
            SS++++VG +++ +D ++L   F++ G V +A+++ DR++GRSRGFGFVT+S+ EE ++AI++LDG DL+GR +RV+ A  R
Sbjct:  192 SSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAEAR 273          

HSP 2 Score: 72.4034 bits (176), Expect = 1.251e-12
Identity = 35/74 (47.30%), Postives = 48/74 (64.86%), Query Frame = 3
Query:  150 KLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVN 371
            K+FVG + ++ D  +L E F + G V    +I D+ TGRSRGFGFVT S+ EE  +A Q  +G +L GR +RVN
Sbjct:   88 KIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVN 161          
BLAST of FC931011 vs. ExPASy Swiss-Prot
Match: RBM3_HUMAN (Putative RNA-binding protein 3 OS=Homo sapiens GN=RBM3 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 3.758e-17
Identity = 38/81 (46.91%), Postives = 61/81 (75.31%), Query Frame = 3
Query:  150 KLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVNYAADRNR 392
            KLFVGG+++N D+ +L + F+ +G ++E  ++ DRET RSRGFGF+TF+  E AS A++A++G+ L GR++RV++A    R
Sbjct:    7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRAMNGESLDGRQIRVDHAGKSAR 87          
BLAST of FC931011 vs. ExPASy Swiss-Prot
Match: GRP7_ARATH (Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana GN=GRP7 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 4.908e-17
Identity = 42/79 (53.16%), Postives = 56/79 (70.89%), Query Frame = 3
Query:  150 KLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVNYAADR 386
            + FVGG+++  DD +L  AFA+YG V +++II DRETGRSRGFGFVTF   +    AI+ ++GQDL GR + VN A  R
Sbjct:    9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVNEAQSR 87          
BLAST of FC931011 vs. ExPASy Swiss-Prot
Match: CIRBP_RAT (Cold-inducible RNA-binding protein OS=Rattus norvegicus GN=Cirbp PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 4.908e-17
Identity = 36/76 (47.37%), Postives = 59/76 (77.63%), Query Frame = 3
Query:  150 KLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVNYA 377
            KLFVGG+S++ ++ +L + F+KYG ++E  ++ DRET RSRGFGFVTF  +++A  A+ A++G+ + GR++RV+ A
Sbjct:    7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82          
BLAST of FC931011 vs. ExPASy Swiss-Prot
Match: CIRBP_MOUSE (Cold-inducible RNA-binding protein OS=Mus musculus GN=Cirbp PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 4.908e-17
Identity = 36/76 (47.37%), Postives = 59/76 (77.63%), Query Frame = 3
Query:  150 KLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVNYA 377
            KLFVGG+S++ ++ +L + F+KYG ++E  ++ DRET RSRGFGFVTF  +++A  A+ A++G+ + GR++RV+ A
Sbjct:    7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82          
BLAST of FC931011 vs. ExPASy Swiss-Prot
Match: CIRBP_CRIGR (Cold-inducible RNA-binding protein OS=Cricetulus griseus GN=CIRBP PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 4.908e-17
Identity = 36/76 (47.37%), Postives = 59/76 (77.63%), Query Frame = 3
Query:  150 KLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVNYA 377
            KLFVGG+S++ ++ +L + F+KYG ++E  ++ DRET RSRGFGFVTF  +++A  A+ A++G+ + GR++RV+ A
Sbjct:    7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82          
BLAST of FC931011 vs. ExPASy Swiss-Prot
Match: ROC1_ARATH (Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana GN=At2g37220 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 6.410e-17
Identity = 39/82 (47.56%), Postives = 62/82 (75.61%), Query Frame = 3
Query:  141 SSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVNYAADR 386
            S ++++VG +S+ +DD +L   F++ G V EAR+I DR++GRS+GFGFVT+ + +E  +AI++LDG DL GR++RV+ A  R
Sbjct:  202 SGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAEAR 283          

HSP 2 Score: 73.9442 bits (180), Expect = 4.299e-13
Identity = 36/74 (48.65%), Postives = 47/74 (63.51%), Query Frame = 3
Query:  150 KLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVN 371
            KLFVG + +N+D   L + F   G V    +I D+ TGRSRGFGFVT S+V E  +A Q  +G +L GR +RVN
Sbjct:   92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVN 165          
The following BLAST results are available for this feature:
BLAST of FC931011 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
CIRBP_HUMAN2.203e-1748.68Cold-inducible RNA-binding protein OS=Homo sapiens... [more]
ROC3_NICSY2.877e-1751.8528 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ROC1_NICSY3.758e-1746.3429 kDa ribonucleoprotein A, chloroplastic OS=Nicot... [more]
ROC1_NICPL3.758e-1746.3430 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
RBM3_HUMAN3.758e-1746.91Putative RNA-binding protein 3 OS=Homo sapiens GN=... [more]
GRP7_ARATH4.908e-1753.16Glycine-rich RNA-binding protein 7 OS=Arabidopsis ... [more]
CIRBP_RAT4.908e-1747.37Cold-inducible RNA-binding protein OS=Rattus norve... [more]
CIRBP_MOUSE4.908e-1747.37Cold-inducible RNA-binding protein OS=Mus musculus... [more]
CIRBP_CRIGR4.908e-1747.37Cold-inducible RNA-binding protein OS=Cricetulus g... [more]
ROC1_ARATH6.410e-1747.56Ribonucleoprotein At2g37220, chloroplastic OS=Arab... [more]

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Properties
Property NameValue
Genbank descriptionC34100D11EF PostHarvP1 Citrus clementina cDNA clone C34100D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931011 ID=FC931011; Name=FC931011; organism=Citrus clementina; type=EST; length=495bp
GGTTTCTTCTTTCACAAAAGGTTATTATAATGGCTTTCTTTAGTAAGGTT
GGGAATATACTTAGGCAGACTGCTGGCAAGCGGATCAGTTGTGAATCATT
TATATCCAACCCATCCATCTACCAAGCAATACGATGCATGTCATCTTCGA
AACTTTTTGTTGGAGGCATTTCATATAACATGGATGACAATAGCTTGAGA
GAAGCTTTTGCTAAATATGGTTATGTCAATGAAGCAAGAATCATTTTGGA
TCGTGAAACTGGTAGATCCAGAGGATTTGGTTTTGTCACATTCAGCACTG
TGGAGGAGGCGTCTAGTGCCATCCAAGCCTTGGATGGACAGGATCTTCAT
GGCCGTCGTGTAAGGGTGAATTATGCAGCTGATAGAAATCGTGGCTATGG
AGGTGGCGGCTTTGGAGGCGGTGGTTACGGAGGTGGTGGCTACGGTGGTG
GTGGTGGTGGTTATGGAGGTGGTGGCTATGGTGGTGGAGGTTATG
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