FC931011
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC931011 vs. ExPASy Swiss-Prot
Match: CIRBP_HUMAN (Cold-inducible RNA-binding protein OS=Homo sapiens GN=CIRBP PE=1 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 2.203e-17 Identity = 37/76 (48.68%), Postives = 59/76 (77.63%), Query Frame = 3 Query: 150 KLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVNYA 377 KLFVGG+S++ ++ SL + F+KYG ++E ++ DRET RSRGFGFVTF +++A A+ A++G+ + GR++RV+ A Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82
BLAST of FC931011 vs. ExPASy Swiss-Prot
Match: ROC3_NICSY (28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 2.877e-17 Identity = 42/81 (51.85%), Postives = 58/81 (71.60%), Query Frame = 3 Query: 150 KLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVNYAADRNR 392 +++VG I +++DD L + F+++G V AR++ DRE+GRSRGFGFVT S+ E S AI LDGQ L GR +RVN A +R R Sbjct: 192 RIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTIRVNAAEERPR 272 HSP 2 Score: 81.2629 bits (199), Expect = 2.693e-15 Identity = 41/80 (51.25%), Postives = 53/80 (66.25%), Query Frame = 3 Query: 147 SKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVNYAADR 386 +KLFVG + Y++D L + F + G V A +I +RET RSRGFGFVT STVEEA A++ DL+GR + VN AA R Sbjct: 97 AKLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAVELYSQYDLNGRLLTVNKAAPR 176
BLAST of FC931011 vs. ExPASy Swiss-Prot
Match: ROC1_NICSY (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 3.758e-17 Identity = 38/82 (46.34%), Postives = 65/82 (79.27%), Query Frame = 3 Query: 141 SSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVNYAADR 386 SS++++VG +++ +D ++L F++ G V +A+++ DR++GRSRGFGFVT+S+ EE ++AI++LDG DL+GR +RV+ A R Sbjct: 186 SSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAEAR 267 HSP 2 Score: 72.7886 bits (177), Expect = 9.578e-13 Identity = 35/74 (47.30%), Postives = 48/74 (64.86%), Query Frame = 3 Query: 150 KLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVN 371 K+FVG + ++ D +L E F + G V +I D+ TGRSRGFGFVT S+ EE +A Q +G +L GR +RVN Sbjct: 88 KIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVN 161
BLAST of FC931011 vs. ExPASy Swiss-Prot
Match: ROC1_NICPL (30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 3.758e-17 Identity = 38/82 (46.34%), Postives = 65/82 (79.27%), Query Frame = 3 Query: 141 SSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVNYAADR 386 SS++++VG +++ +D ++L F++ G V +A+++ DR++GRSRGFGFVT+S+ EE ++AI++LDG DL+GR +RV+ A R Sbjct: 192 SSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAEAR 273 HSP 2 Score: 72.4034 bits (176), Expect = 1.251e-12 Identity = 35/74 (47.30%), Postives = 48/74 (64.86%), Query Frame = 3 Query: 150 KLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVN 371 K+FVG + ++ D +L E F + G V +I D+ TGRSRGFGFVT S+ EE +A Q +G +L GR +RVN Sbjct: 88 KIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVN 161
BLAST of FC931011 vs. ExPASy Swiss-Prot
Match: RBM3_HUMAN (Putative RNA-binding protein 3 OS=Homo sapiens GN=RBM3 PE=1 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 3.758e-17 Identity = 38/81 (46.91%), Postives = 61/81 (75.31%), Query Frame = 3 Query: 150 KLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVNYAADRNR 392 KLFVGG+++N D+ +L + F+ +G ++E ++ DRET RSRGFGF+TF+ E AS A++A++G+ L GR++RV++A R Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRAMNGESLDGRQIRVDHAGKSAR 87
BLAST of FC931011 vs. ExPASy Swiss-Prot
Match: GRP7_ARATH (Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana GN=GRP7 PE=1 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 4.908e-17 Identity = 42/79 (53.16%), Postives = 56/79 (70.89%), Query Frame = 3 Query: 150 KLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVNYAADR 386 + FVGG+++ DD +L AFA+YG V +++II DRETGRSRGFGFVTF + AI+ ++GQDL GR + VN A R Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVNEAQSR 87
BLAST of FC931011 vs. ExPASy Swiss-Prot
Match: CIRBP_RAT (Cold-inducible RNA-binding protein OS=Rattus norvegicus GN=Cirbp PE=2 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 4.908e-17 Identity = 36/76 (47.37%), Postives = 59/76 (77.63%), Query Frame = 3 Query: 150 KLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVNYA 377 KLFVGG+S++ ++ +L + F+KYG ++E ++ DRET RSRGFGFVTF +++A A+ A++G+ + GR++RV+ A Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82
BLAST of FC931011 vs. ExPASy Swiss-Prot
Match: CIRBP_MOUSE (Cold-inducible RNA-binding protein OS=Mus musculus GN=Cirbp PE=1 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 4.908e-17 Identity = 36/76 (47.37%), Postives = 59/76 (77.63%), Query Frame = 3 Query: 150 KLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVNYA 377 KLFVGG+S++ ++ +L + F+KYG ++E ++ DRET RSRGFGFVTF +++A A+ A++G+ + GR++RV+ A Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82
BLAST of FC931011 vs. ExPASy Swiss-Prot
Match: CIRBP_CRIGR (Cold-inducible RNA-binding protein OS=Cricetulus griseus GN=CIRBP PE=2 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 4.908e-17 Identity = 36/76 (47.37%), Postives = 59/76 (77.63%), Query Frame = 3 Query: 150 KLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVNYA 377 KLFVGG+S++ ++ +L + F+KYG ++E ++ DRET RSRGFGFVTF +++A A+ A++G+ + GR++RV+ A Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82
BLAST of FC931011 vs. ExPASy Swiss-Prot
Match: ROC1_ARATH (Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana GN=At2g37220 PE=1 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 6.410e-17 Identity = 39/82 (47.56%), Postives = 62/82 (75.61%), Query Frame = 3 Query: 141 SSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVNYAADR 386 S ++++VG +S+ +DD +L F++ G V EAR+I DR++GRS+GFGFVT+ + +E +AI++LDG DL GR++RV+ A R Sbjct: 202 SGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAEAR 283 HSP 2 Score: 73.9442 bits (180), Expect = 4.299e-13 Identity = 36/74 (48.65%), Postives = 47/74 (63.51%), Query Frame = 3 Query: 150 KLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVN 371 KLFVG + +N+D L + F G V +I D+ TGRSRGFGFVT S+V E +A Q +G +L GR +RVN Sbjct: 92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVN 165 The following BLAST results are available for this feature:
BLAST of FC931011 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 85
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Sequences
The
following sequences are available for this feature:
EST sequence >FC931011 ID=FC931011; Name=FC931011; organism=Citrus clementina; type=EST; length=495bpback to top |