FC931011
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC931011 vs. ExPASy Swiss-Prot
Match: RBM3_RAT (Putative RNA-binding protein 3 OS=Rattus norvegicus GN=Rbm3 PE=1 SV=2) HSP 1 Score: 86.6557 bits (213), Expect = 6.410e-17 Identity = 37/81 (45.68%), Postives = 60/81 (74.07%), Query Frame = 3 Query: 150 KLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVNYAADRNR 392 KLFVGG+++N D+ +L + F+ +G ++E ++ DRET RSRGFGF+TF+ E AS ++A++G+ L GR++RV++A R Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDVMRAMNGESLDGRQIRVDHAGKSAR 87
BLAST of FC931011 vs. ExPASy Swiss-Prot
Match: GRP1_SINAL (Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba PE=2 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 6.410e-17 Identity = 41/79 (51.90%), Postives = 56/79 (70.89%), Query Frame = 3 Query: 150 KLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVNYAADR 386 + FVGG+++ DD +L AF++YG V +++II DRETGRSRGFGFVTF + AI+ ++GQDL GR + VN A R Sbjct: 9 RCFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDLDGRSITVNEAQSR 87
BLAST of FC931011 vs. ExPASy Swiss-Prot
Match: CIRBA_XENLA (Cold-inducible RNA-binding protein A OS=Xenopus laevis GN=cirbp-A PE=1 SV=2) HSP 1 Score: 85.8853 bits (211), Expect = 1.093e-16 Identity = 36/76 (47.37%), Postives = 58/76 (76.32%), Query Frame = 3 Query: 150 KLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVNYA 377 KLF+GG+++ +++ L +AF KYG ++E ++ DRET RSRGFGFVTF V++A A+ A++G+ + GR++RV+ A Sbjct: 6 KLFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMAMNGKSVDGRQIRVDQA 81
BLAST of FC931011 vs. ExPASy Swiss-Prot
Match: ROC2_ARATH (29 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP29 PE=1 SV=2) HSP 1 Score: 84.3445 bits (207), Expect = 3.181e-16 Identity = 40/82 (48.78%), Postives = 59/82 (71.95%), Query Frame = 3 Query: 141 SSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVNYAADR 386 S ++L+VG +S+ +DD +L F + G V EAR+I DR++GRS+GFGFVT S+ +E AI +L+G DL GR++RV+ A R Sbjct: 255 SGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAEAR 336 HSP 2 Score: 74.7146 bits (182), Expect = 2.521e-13 Identity = 36/74 (48.65%), Postives = 46/74 (62.16%), Query Frame = 3 Query: 150 KLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVN 371 KLFVG +S+N+D L + F G V +I D+ TGRSRGFGFVT ST E +A Q +G + GR +RVN Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVN 173
BLAST of FC931011 vs. ExPASy Swiss-Prot
Match: GRP1_DAUCA (Glycine-rich RNA-binding protein OS=Daucus carota PE=2 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 3.181e-16 Identity = 38/79 (48.10%), Postives = 57/79 (72.15%), Query Frame = 3 Query: 150 KLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVNYAADR 386 + FVGG+++ +D SL +AF+++G + +++II DRETGRSRGFGFVTF + AI+ ++GQ+L GR + VN A R Sbjct: 7 RCFVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIEGMNGQELDGRNITVNEAQSR 85
BLAST of FC931011 vs. ExPASy Swiss-Prot
Match: CIRBP_RANCA (Cold-inducible RNA-binding protein OS=Rana catesbeiana GN=cirbp PE=2 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 4.155e-16 Identity = 37/76 (48.68%), Postives = 54/76 (71.05%), Query Frame = 3 Query: 150 KLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVNYA 377 KLFVGG+S++ D+ L F+KYG + E ++ DRET RSRGFGFVTF E+A A+ ++G+ + GR++RV+ A Sbjct: 7 KLFVGGLSFDTDEQCLETVFSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDAKDAMAGMNGKTVDGRQIRVDQA 82
BLAST of FC931011 vs. ExPASy Swiss-Prot
Match: CIRBB_XENLA (Cold-inducible RNA-binding protein B OS=Xenopus laevis GN=cirbp-B PE=1 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 4.155e-16 Identity = 35/76 (46.05%), Postives = 58/76 (76.32%), Query Frame = 3 Query: 150 KLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVNYA 377 KLF+GG++++ ++ SL + F+KYG ++E ++ DRET RSRGFGFVTF ++A A+ A++G+ + GR++RV+ A Sbjct: 6 KLFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMAMNGKAVDGRQIRVDQA 81
BLAST of FC931011 vs. ExPASy Swiss-Prot
Match: GRP2_SINAL (Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba PE=2 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 5.426e-16 Identity = 39/79 (49.37%), Postives = 56/79 (70.89%), Query Frame = 3 Query: 150 KLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVNYAADR 386 + FVGG+++ D+ SL AF+++G + +++II DRETGRSRGFGFVTF + AI+ ++GQDL GR + VN A R Sbjct: 9 RCFVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDLDGRSITVNEAQSR 87
BLAST of FC931011 vs. ExPASy Swiss-Prot
Match: GRPA_MAIZE (Glycine-rich RNA-binding, abscisic acid-inducible protein OS=Zea mays GN=RAB15 PE=1 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 9.256e-16 Identity = 38/79 (48.10%), Postives = 55/79 (69.62%), Query Frame = 3 Query: 150 KLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVNYAADR 386 + FVGG+++ + SL AFA YG + ++++I DRETGRSRGFGFVTFS+ AI+ ++G++L GR + VN A R Sbjct: 9 RCFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIENMNGKELDGRNITVNQAQSR 87
BLAST of FC931011 vs. ExPASy Swiss-Prot
Match: GRP2_SORBI (Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor GN=GRP2 PE=2 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 9.256e-16 Identity = 37/79 (46.84%), Postives = 58/79 (73.42%), Query Frame = 3 Query: 150 KLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVNYAADR 386 + FVGG+++ ++ +L +AFA +G V ++++I DRETGRSRGFGFVTFS+ + AI+ ++G++L GR + VN A R Sbjct: 9 RCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAIENMNGKELDGRNITVNQAQSR 87 The following BLAST results are available for this feature:
BLAST of FC931011 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 85
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Sequences
The
following sequences are available for this feature:
EST sequence >FC931011 ID=FC931011; Name=FC931011; organism=Citrus clementina; type=EST; length=495bpback to top |