FC931011

Overview
NameFC931011
Unique NameFC931011
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length495
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931011 vs. ExPASy Swiss-Prot
Match: RBM3_RAT (Putative RNA-binding protein 3 OS=Rattus norvegicus GN=Rbm3 PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 6.410e-17
Identity = 37/81 (45.68%), Postives = 60/81 (74.07%), Query Frame = 3
Query:  150 KLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVNYAADRNR 392
            KLFVGG+++N D+ +L + F+ +G ++E  ++ DRET RSRGFGF+TF+  E AS  ++A++G+ L GR++RV++A    R
Sbjct:    7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDVMRAMNGESLDGRQIRVDHAGKSAR 87          
BLAST of FC931011 vs. ExPASy Swiss-Prot
Match: GRP1_SINAL (Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 6.410e-17
Identity = 41/79 (51.90%), Postives = 56/79 (70.89%), Query Frame = 3
Query:  150 KLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVNYAADR 386
            + FVGG+++  DD +L  AF++YG V +++II DRETGRSRGFGFVTF   +    AI+ ++GQDL GR + VN A  R
Sbjct:    9 RCFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDLDGRSITVNEAQSR 87          
BLAST of FC931011 vs. ExPASy Swiss-Prot
Match: CIRBA_XENLA (Cold-inducible RNA-binding protein A OS=Xenopus laevis GN=cirbp-A PE=1 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 1.093e-16
Identity = 36/76 (47.37%), Postives = 58/76 (76.32%), Query Frame = 3
Query:  150 KLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVNYA 377
            KLF+GG+++  +++ L +AF KYG ++E  ++ DRET RSRGFGFVTF  V++A  A+ A++G+ + GR++RV+ A
Sbjct:    6 KLFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMAMNGKSVDGRQIRVDQA 81          
BLAST of FC931011 vs. ExPASy Swiss-Prot
Match: ROC2_ARATH (29 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP29 PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 3.181e-16
Identity = 40/82 (48.78%), Postives = 59/82 (71.95%), Query Frame = 3
Query:  141 SSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVNYAADR 386
            S ++L+VG +S+ +DD +L   F + G V EAR+I DR++GRS+GFGFVT S+ +E   AI +L+G DL GR++RV+ A  R
Sbjct:  255 SGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAEAR 336          

HSP 2 Score: 74.7146 bits (182), Expect = 2.521e-13
Identity = 36/74 (48.65%), Postives = 46/74 (62.16%), Query Frame = 3
Query:  150 KLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVN 371
            KLFVG +S+N+D   L + F   G V    +I D+ TGRSRGFGFVT ST  E  +A Q  +G +  GR +RVN
Sbjct:  100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVN 173          
BLAST of FC931011 vs. ExPASy Swiss-Prot
Match: GRP1_DAUCA (Glycine-rich RNA-binding protein OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.181e-16
Identity = 38/79 (48.10%), Postives = 57/79 (72.15%), Query Frame = 3
Query:  150 KLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVNYAADR 386
            + FVGG+++  +D SL +AF+++G + +++II DRETGRSRGFGFVTF   +    AI+ ++GQ+L GR + VN A  R
Sbjct:    7 RCFVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIEGMNGQELDGRNITVNEAQSR 85          
BLAST of FC931011 vs. ExPASy Swiss-Prot
Match: CIRBP_RANCA (Cold-inducible RNA-binding protein OS=Rana catesbeiana GN=cirbp PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 4.155e-16
Identity = 37/76 (48.68%), Postives = 54/76 (71.05%), Query Frame = 3
Query:  150 KLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVNYA 377
            KLFVGG+S++ D+  L   F+KYG + E  ++ DRET RSRGFGFVTF   E+A  A+  ++G+ + GR++RV+ A
Sbjct:    7 KLFVGGLSFDTDEQCLETVFSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDAKDAMAGMNGKTVDGRQIRVDQA 82          
BLAST of FC931011 vs. ExPASy Swiss-Prot
Match: CIRBB_XENLA (Cold-inducible RNA-binding protein B OS=Xenopus laevis GN=cirbp-B PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 4.155e-16
Identity = 35/76 (46.05%), Postives = 58/76 (76.32%), Query Frame = 3
Query:  150 KLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVNYA 377
            KLF+GG++++ ++ SL + F+KYG ++E  ++ DRET RSRGFGFVTF   ++A  A+ A++G+ + GR++RV+ A
Sbjct:    6 KLFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMAMNGKAVDGRQIRVDQA 81          
BLAST of FC931011 vs. ExPASy Swiss-Prot
Match: GRP2_SINAL (Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 5.426e-16
Identity = 39/79 (49.37%), Postives = 56/79 (70.89%), Query Frame = 3
Query:  150 KLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVNYAADR 386
            + FVGG+++  D+ SL  AF+++G + +++II DRETGRSRGFGFVTF   +    AI+ ++GQDL GR + VN A  R
Sbjct:    9 RCFVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDLDGRSITVNEAQSR 87          
BLAST of FC931011 vs. ExPASy Swiss-Prot
Match: GRPA_MAIZE (Glycine-rich RNA-binding, abscisic acid-inducible protein OS=Zea mays GN=RAB15 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 9.256e-16
Identity = 38/79 (48.10%), Postives = 55/79 (69.62%), Query Frame = 3
Query:  150 KLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVNYAADR 386
            + FVGG+++   + SL  AFA YG + ++++I DRETGRSRGFGFVTFS+      AI+ ++G++L GR + VN A  R
Sbjct:    9 RCFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIENMNGKELDGRNITVNQAQSR 87          
BLAST of FC931011 vs. ExPASy Swiss-Prot
Match: GRP2_SORBI (Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor GN=GRP2 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 9.256e-16
Identity = 37/79 (46.84%), Postives = 58/79 (73.42%), Query Frame = 3
Query:  150 KLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVNYAADR 386
            + FVGG+++  ++ +L +AFA +G V ++++I DRETGRSRGFGFVTFS+ +    AI+ ++G++L GR + VN A  R
Sbjct:    9 RCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAIENMNGKELDGRNITVNQAQSR 87          
The following BLAST results are available for this feature:
BLAST of FC931011 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
RBM3_RAT6.410e-1745.68Putative RNA-binding protein 3 OS=Rattus norvegicu... [more]
GRP1_SINAL6.410e-1751.90Glycine-rich RNA-binding protein GRP1A OS=Sinapis ... [more]
CIRBA_XENLA1.093e-1647.37Cold-inducible RNA-binding protein A OS=Xenopus la... [more]
ROC2_ARATH3.181e-1648.7829 kDa ribonucleoprotein, chloroplastic OS=Arabido... [more]
GRP1_DAUCA3.181e-1648.10Glycine-rich RNA-binding protein OS=Daucus carota ... [more]
CIRBP_RANCA4.155e-1648.68Cold-inducible RNA-binding protein OS=Rana catesbe... [more]
CIRBB_XENLA4.155e-1646.05Cold-inducible RNA-binding protein B OS=Xenopus la... [more]
GRP2_SINAL5.426e-1649.37Glycine-rich RNA-binding protein GRP2A OS=Sinapis ... [more]
GRPA_MAIZE9.256e-1648.10Glycine-rich RNA-binding, abscisic acid-inducible ... [more]
GRP2_SORBI9.256e-1646.84Glycine-rich RNA-binding protein 2 OS=Sorghum bico... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34100D11EF PostHarvP1 Citrus clementina cDNA clone C34100D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931011 ID=FC931011; Name=FC931011; organism=Citrus clementina; type=EST; length=495bp
GGTTTCTTCTTTCACAAAAGGTTATTATAATGGCTTTCTTTAGTAAGGTT
GGGAATATACTTAGGCAGACTGCTGGCAAGCGGATCAGTTGTGAATCATT
TATATCCAACCCATCCATCTACCAAGCAATACGATGCATGTCATCTTCGA
AACTTTTTGTTGGAGGCATTTCATATAACATGGATGACAATAGCTTGAGA
GAAGCTTTTGCTAAATATGGTTATGTCAATGAAGCAAGAATCATTTTGGA
TCGTGAAACTGGTAGATCCAGAGGATTTGGTTTTGTCACATTCAGCACTG
TGGAGGAGGCGTCTAGTGCCATCCAAGCCTTGGATGGACAGGATCTTCAT
GGCCGTCGTGTAAGGGTGAATTATGCAGCTGATAGAAATCGTGGCTATGG
AGGTGGCGGCTTTGGAGGCGGTGGTTACGGAGGTGGTGGCTACGGTGGTG
GTGGTGGTGGTTATGGAGGTGGTGGCTATGGTGGTGGAGGTTATG
back to top