FC931011
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC931011 vs. ExPASy Swiss-Prot
Match: CIRBP_XENTR (Cold-inducible RNA-binding protein OS=Xenopus tropicalis GN=cirbp PE=2 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 9.256e-16 Identity = 37/76 (48.68%), Postives = 55/76 (72.37%), Query Frame = 3 Query: 150 KLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVNYA 377 KLFVGG+++ + SL + F+KYG V E ++ DRE+ RSRGFGFVTF E+A A+ A++G+ + GR++RV+ A Sbjct: 7 KLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMAMNGKSVDGRQIRVDQA 82
BLAST of FC931011 vs. ExPASy Swiss-Prot
Match: GRP1_SORBI (Glycine-rich RNA-binding protein 1 (Fragment) OS=Sorghum bicolor GN=GRP1 PE=2 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 7.835e-15 Identity = 40/66 (60.61%), Postives = 49/66 (74.24%), Query Frame = 3 Query: 189 NSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVNYAADR 386 NSL AF+ YG V E++IILDRET RSRGFGFVTFST E SAI+ ++G++L GR + VN A R Sbjct: 1 NSLHSAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMRSAIEGMNGKELDGRNITVNEAQSR 66
BLAST of FC931011 vs. ExPASy Swiss-Prot
Match: PUB1_YEAST (Nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1 OS=Saccharomyces cerevisiae GN=PUB1 PE=1 SV=3) HSP 1 Score: 78.1814 bits (191), Expect = 2.280e-14 Identity = 34/79 (43.04%), Postives = 57/79 (72.15%), Query Frame = 3 Query: 153 LFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVNYAADRN 389 LFVG ++ N+DD +LR AF + ++ D +TG SRG+GFV+F++ ++A +A+ ++ GQDL+GR +R+N+AA R+ Sbjct: 164 LFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKRD 242
BLAST of FC931011 vs. ExPASy Swiss-Prot
Match: GRP10_BRANA (Glycine-rich RNA-binding protein 10 OS=Brassica napus GN=GRP10 PE=2 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 1.131e-13 Identity = 36/79 (45.57%), Postives = 52/79 (65.82%), Query Frame = 3 Query: 150 KLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVNYAADR 386 + FVGG+++ D L F+++G V +++II DRETGRSRGFGFVTF + AI ++G++L GR + VN A R Sbjct: 7 RCFVGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAIDEMNGKELDGRTITVNEAQSR 85
BLAST of FC931011 vs. ExPASy Swiss-Prot
Match: RBPB_ANASP (Putative RNA-binding protein rbpB OS=Anabaena sp. (strain PCC 7120) GN=rbpB PE=3 SV=3) HSP 1 Score: 75.485 bits (184), Expect = 1.478e-13 Identity = 36/78 (46.15%), Postives = 53/78 (67.95%), Query Frame = 3 Query: 153 LFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVNYAADR 386 ++VG +SY++ + SL FA+YG V ++ +DRETGR RGFGFV + E ++AI+ALDG + GR ++VN A R Sbjct: 3 IYVGNLSYDVTEESLNAVFAEYGSVKRVQLPVDRETGRVRGFGFVEMGSDAEETAAIEALDGAEWMGRDLKVNKAKPR 80
BLAST of FC931011 vs. ExPASy Swiss-Prot
Match: GRP8_ARATH (Glycine-rich RNA-binding protein 8 OS=Arabidopsis thaliana GN=GRP8 PE=1 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 1.930e-13 Identity = 35/79 (44.30%), Postives = 55/79 (69.62%), Query Frame = 3 Query: 150 KLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVNYAADR 386 + FVGG+++ +D L+ F+++G V +++II DRE+GRSRGFGFVTF + AI+ ++G++L GR + VN A R Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNEAQSR 85
BLAST of FC931011 vs. ExPASy Swiss-Prot
Match: HNRPG_BOVIN (Heterogeneous nuclear ribonucleoprotein G OS=Bos taurus GN=RBMX PE=2 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 3.292e-13 Identity = 31/76 (40.79%), Postives = 52/76 (68.42%), Query Frame = 3 Query: 150 KLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVNYA 377 KLF+GG++ D+ SL F KYG ++E ++ DRET +SRGF F+TF + +A +A++ ++G+ L G+ ++V A Sbjct: 9 KLFIGGLNLETDEKSLEATFGKYGRISEVLLMKDRETNKSRGFAFITFESPADAKAAVRDMNGKSLDGKAIKVAQA 84
BLAST of FC931011 vs. ExPASy Swiss-Prot
Match: ROC5_NICSY (33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 5.615e-13 Identity = 35/79 (44.30%), Postives = 49/79 (62.03%), Query Frame = 3 Query: 138 MSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVNY 374 + +L+VG + ++M + L E FA+ G V I+ DR T RSRGF FVT +VEEA AI+ DG + GR V+VN+ Sbjct: 111 VEGGRLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRLFDGSQVGGRTVKVNF 189 HSP 2 Score: 71.2478 bits (173), Expect = 2.787e-12 Identity = 34/82 (41.46%), Postives = 52/82 (63.41%), Query Frame = 3 Query: 141 SSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVNYAADR 386 S KL+V +S+ + LR+AFA A++I DR +GRSRGFGF+TFS+ E +SA+ ++ +L GR +R+N A + Sbjct: 215 SPHKLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTMNEVELEGRPLRLNVAGQK 296
BLAST of FC931011 vs. ExPASy Swiss-Prot
Match: YDC1_SCHPO (Uncharacterized RNA-binding protein C25G10.01 OS=Schizosaccharomyces pombe GN=SPAC25G10.01 PE=1 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 1.251e-12 Identity = 36/75 (48.00%), Postives = 52/75 (69.33%), Query Frame = 3 Query: 153 LFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVNYA 377 LFV GI+ M ++ L++ F+K+G V RI+ + T SRGFGF++FSTVEEA+SAI L+ Q+ +GR + V A Sbjct: 103 LFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDNLNSQEFYGRVLNVQKA 177
BLAST of FC931011 vs. ExPASy Swiss-Prot
Match: RBPA_SYNY3 (Putative RNA-binding protein rbpA OS=Synechocystis sp. (strain PCC 6803) GN=rbpA PE=3 SV=3) HSP 1 Score: 72.4034 bits (176), Expect = 1.251e-12 Identity = 35/78 (44.87%), Postives = 50/78 (64.10%), Query Frame = 3 Query: 153 LFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVNYAADR 386 ++VG +SY++ + L FA+YG V ++ DRETGR RGFGFV E ++AI+ALDG + GR ++VN A R Sbjct: 3 IYVGNLSYDVSEADLTAVFAEYGSVKRVQLPTDRETGRMRGFGFVELEADAEETAAIEALDGAEWMGRDLKVNKAKPR 80 The following BLAST results are available for this feature:
BLAST of FC931011 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 85
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Sequences
The
following sequences are available for this feature:
EST sequence >FC931011 ID=FC931011; Name=FC931011; organism=Citrus clementina; type=EST; length=495bpback to top |