FC931011

Overview
NameFC931011
Unique NameFC931011
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length495
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931011 vs. ExPASy Swiss-Prot
Match: CIRBP_XENTR (Cold-inducible RNA-binding protein OS=Xenopus tropicalis GN=cirbp PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 9.256e-16
Identity = 37/76 (48.68%), Postives = 55/76 (72.37%), Query Frame = 3
Query:  150 KLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVNYA 377
            KLFVGG+++   + SL + F+KYG V E  ++ DRE+ RSRGFGFVTF   E+A  A+ A++G+ + GR++RV+ A
Sbjct:    7 KLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMAMNGKSVDGRQIRVDQA 82          
BLAST of FC931011 vs. ExPASy Swiss-Prot
Match: GRP1_SORBI (Glycine-rich RNA-binding protein 1 (Fragment) OS=Sorghum bicolor GN=GRP1 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 7.835e-15
Identity = 40/66 (60.61%), Postives = 49/66 (74.24%), Query Frame = 3
Query:  189 NSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVNYAADR 386
            NSL  AF+ YG V E++IILDRET RSRGFGFVTFST E   SAI+ ++G++L GR + VN A  R
Sbjct:    1 NSLHSAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMRSAIEGMNGKELDGRNITVNEAQSR 66          
BLAST of FC931011 vs. ExPASy Swiss-Prot
Match: PUB1_YEAST (Nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1 OS=Saccharomyces cerevisiae GN=PUB1 PE=1 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 2.280e-14
Identity = 34/79 (43.04%), Postives = 57/79 (72.15%), Query Frame = 3
Query:  153 LFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVNYAADRN 389
            LFVG ++ N+DD +LR AF  +       ++ D +TG SRG+GFV+F++ ++A +A+ ++ GQDL+GR +R+N+AA R+
Sbjct:  164 LFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKRD 242          
BLAST of FC931011 vs. ExPASy Swiss-Prot
Match: GRP10_BRANA (Glycine-rich RNA-binding protein 10 OS=Brassica napus GN=GRP10 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.131e-13
Identity = 36/79 (45.57%), Postives = 52/79 (65.82%), Query Frame = 3
Query:  150 KLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVNYAADR 386
            + FVGG+++   D  L   F+++G V +++II DRETGRSRGFGFVTF   +    AI  ++G++L GR + VN A  R
Sbjct:    7 RCFVGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAIDEMNGKELDGRTITVNEAQSR 85          
BLAST of FC931011 vs. ExPASy Swiss-Prot
Match: RBPB_ANASP (Putative RNA-binding protein rbpB OS=Anabaena sp. (strain PCC 7120) GN=rbpB PE=3 SV=3)

HSP 1 Score: 75.485 bits (184), Expect = 1.478e-13
Identity = 36/78 (46.15%), Postives = 53/78 (67.95%), Query Frame = 3
Query:  153 LFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVNYAADR 386
            ++VG +SY++ + SL   FA+YG V   ++ +DRETGR RGFGFV   +  E ++AI+ALDG +  GR ++VN A  R
Sbjct:    3 IYVGNLSYDVTEESLNAVFAEYGSVKRVQLPVDRETGRVRGFGFVEMGSDAEETAAIEALDGAEWMGRDLKVNKAKPR 80          
BLAST of FC931011 vs. ExPASy Swiss-Prot
Match: GRP8_ARATH (Glycine-rich RNA-binding protein 8 OS=Arabidopsis thaliana GN=GRP8 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.930e-13
Identity = 35/79 (44.30%), Postives = 55/79 (69.62%), Query Frame = 3
Query:  150 KLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVNYAADR 386
            + FVGG+++  +D  L+  F+++G V +++II DRE+GRSRGFGFVTF   +    AI+ ++G++L GR + VN A  R
Sbjct:    7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNEAQSR 85          
BLAST of FC931011 vs. ExPASy Swiss-Prot
Match: HNRPG_BOVIN (Heterogeneous nuclear ribonucleoprotein G OS=Bos taurus GN=RBMX PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.292e-13
Identity = 31/76 (40.79%), Postives = 52/76 (68.42%), Query Frame = 3
Query:  150 KLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVNYA 377
            KLF+GG++   D+ SL   F KYG ++E  ++ DRET +SRGF F+TF +  +A +A++ ++G+ L G+ ++V  A
Sbjct:    9 KLFIGGLNLETDEKSLEATFGKYGRISEVLLMKDRETNKSRGFAFITFESPADAKAAVRDMNGKSLDGKAIKVAQA 84          
BLAST of FC931011 vs. ExPASy Swiss-Prot
Match: ROC5_NICSY (33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 5.615e-13
Identity = 35/79 (44.30%), Postives = 49/79 (62.03%), Query Frame = 3
Query:  138 MSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVNY 374
            +   +L+VG + ++M  + L E FA+ G V    I+ DR T RSRGF FVT  +VEEA  AI+  DG  + GR V+VN+
Sbjct:  111 VEGGRLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRLFDGSQVGGRTVKVNF 189          

HSP 2 Score: 71.2478 bits (173), Expect = 2.787e-12
Identity = 34/82 (41.46%), Postives = 52/82 (63.41%), Query Frame = 3
Query:  141 SSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVNYAADR 386
            S  KL+V  +S+ +    LR+AFA       A++I DR +GRSRGFGF+TFS+ E  +SA+  ++  +L GR +R+N A  +
Sbjct:  215 SPHKLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTMNEVELEGRPLRLNVAGQK 296          
BLAST of FC931011 vs. ExPASy Swiss-Prot
Match: YDC1_SCHPO (Uncharacterized RNA-binding protein C25G10.01 OS=Schizosaccharomyces pombe GN=SPAC25G10.01 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.251e-12
Identity = 36/75 (48.00%), Postives = 52/75 (69.33%), Query Frame = 3
Query:  153 LFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVNYA 377
            LFV GI+  M ++ L++ F+K+G V   RI+ +  T  SRGFGF++FSTVEEA+SAI  L+ Q+ +GR + V  A
Sbjct:  103 LFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDNLNSQEFYGRVLNVQKA 177          
BLAST of FC931011 vs. ExPASy Swiss-Prot
Match: RBPA_SYNY3 (Putative RNA-binding protein rbpA OS=Synechocystis sp. (strain PCC 6803) GN=rbpA PE=3 SV=3)

HSP 1 Score: 72.4034 bits (176), Expect = 1.251e-12
Identity = 35/78 (44.87%), Postives = 50/78 (64.10%), Query Frame = 3
Query:  153 LFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVNYAADR 386
            ++VG +SY++ +  L   FA+YG V   ++  DRETGR RGFGFV      E ++AI+ALDG +  GR ++VN A  R
Sbjct:    3 IYVGNLSYDVSEADLTAVFAEYGSVKRVQLPTDRETGRMRGFGFVELEADAEETAAIEALDGAEWMGRDLKVNKAKPR 80          
The following BLAST results are available for this feature:
BLAST of FC931011 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
CIRBP_XENTR9.256e-1648.68Cold-inducible RNA-binding protein OS=Xenopus trop... [more]
GRP1_SORBI7.835e-1560.61Glycine-rich RNA-binding protein 1 (Fragment) OS=S... [more]
PUB1_YEAST2.280e-1443.04Nuclear and cytoplasmic polyadenylated RNA-binding... [more]
GRP10_BRANA1.131e-1345.57Glycine-rich RNA-binding protein 10 OS=Brassica na... [more]
RBPB_ANASP1.478e-1346.15Putative RNA-binding protein rbpB OS=Anabaena sp. ... [more]
GRP8_ARATH1.930e-1344.30Glycine-rich RNA-binding protein 8 OS=Arabidopsis ... [more]
HNRPG_BOVIN3.292e-1340.79Heterogeneous nuclear ribonucleoprotein G OS=Bos t... [more]
ROC5_NICSY5.615e-1344.3033 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
YDC1_SCHPO1.251e-1248.00Uncharacterized RNA-binding protein C25G10.01 OS=S... [more]
RBPA_SYNY31.251e-1244.87Putative RNA-binding protein rbpA OS=Synechocystis... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34100D11EF PostHarvP1 Citrus clementina cDNA clone C34100D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931011 ID=FC931011; Name=FC931011; organism=Citrus clementina; type=EST; length=495bp
GGTTTCTTCTTTCACAAAAGGTTATTATAATGGCTTTCTTTAGTAAGGTT
GGGAATATACTTAGGCAGACTGCTGGCAAGCGGATCAGTTGTGAATCATT
TATATCCAACCCATCCATCTACCAAGCAATACGATGCATGTCATCTTCGA
AACTTTTTGTTGGAGGCATTTCATATAACATGGATGACAATAGCTTGAGA
GAAGCTTTTGCTAAATATGGTTATGTCAATGAAGCAAGAATCATTTTGGA
TCGTGAAACTGGTAGATCCAGAGGATTTGGTTTTGTCACATTCAGCACTG
TGGAGGAGGCGTCTAGTGCCATCCAAGCCTTGGATGGACAGGATCTTCAT
GGCCGTCGTGTAAGGGTGAATTATGCAGCTGATAGAAATCGTGGCTATGG
AGGTGGCGGCTTTGGAGGCGGTGGTTACGGAGGTGGTGGCTACGGTGGTG
GTGGTGGTGGTTATGGAGGTGGTGGCTATGGTGGTGGAGGTTATG
back to top