FC931011

Overview
NameFC931011
Unique NameFC931011
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length495
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931011_ssr444 microsatellite FC931011_ssr444:444..461. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of FC931011 vs. ExPASy Swiss-Prot
Match: RBPA_ANASP (Putative RNA-binding protein rbpA OS=Anabaena sp. (strain PCC 7120) GN=rbpA PE=3 SV=3)

HSP 1 Score: 71.633 bits (174), Expect = 2.134e-12
Identity = 34/78 (43.59%), Postives = 51/78 (65.38%), Query Frame = 3
Query:  153 LFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVNYAADR 386
            ++VG +SY +  ++L   FA+YG V   ++  DRETG+ RGFGFV   +  E ++AI+ALDG +  GR ++VN A  R
Sbjct:    3 IYVGNLSYEVTQDTLSAVFAEYGTVKRVQLPTDRETGQPRGFGFVEMGSEAEEAAAIEALDGAEWMGRDLKVNKAKPR 80          
BLAST of FC931011 vs. ExPASy Swiss-Prot
Match: TIA1_MOUSE (Nucleolysin TIA-1 OS=Mus musculus GN=Tia1 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.787e-12
Identity = 33/91 (36.26%), Postives = 57/91 (62.64%), Query Frame = 3
Query:  105 SNPSIYQAIRCMSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVNYA 377
            S+ ++    R      +FVG +S  +    ++ AFA +G +++AR++ D  TG+S+G+GFV+F    +A +AIQ + GQ L GR++R N+A
Sbjct:   92 SSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 182          
BLAST of FC931011 vs. ExPASy Swiss-Prot
Match: TIA1_HUMAN (Nucleolysin TIA-1 isoform p40 OS=Homo sapiens GN=TIA1 PE=1 SV=3)

HSP 1 Score: 71.2478 bits (173), Expect = 2.787e-12
Identity = 33/91 (36.26%), Postives = 57/91 (62.64%), Query Frame = 3
Query:  105 SNPSIYQAIRCMSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVNYA 377
            S+ ++    R      +FVG +S  +    ++ AFA +G +++AR++ D  TG+S+G+GFV+F    +A +AIQ + GQ L GR++R N+A
Sbjct:   92 SSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 182          
BLAST of FC931011 vs. ExPASy Swiss-Prot
Match: RBM39_PONAB (RNA-binding protein 39 OS=Pongo abelii GN=RBM39 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.787e-12
Identity = 30/79 (37.97%), Postives = 54/79 (68.35%), Query Frame = 3
Query:  150 KLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVNYAADR 386
            +L+VG + +N+ ++ LR  F  +G +   ++++D ETGRS+G+GF+TFS  E A  A++ L+G +L GR ++V +  +R
Sbjct:  251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTER 329          
BLAST of FC931011 vs. ExPASy Swiss-Prot
Match: RBM39_MOUSE (RNA-binding protein 39 OS=Mus musculus GN=Rbm39 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.787e-12
Identity = 30/79 (37.97%), Postives = 54/79 (68.35%), Query Frame = 3
Query:  150 KLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVNYAADR 386
            +L+VG + +N+ ++ LR  F  +G +   ++++D ETGRS+G+GF+TFS  E A  A++ L+G +L GR ++V +  +R
Sbjct:  251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTER 329          
BLAST of FC931011 vs. ExPASy Swiss-Prot
Match: RBM39_HUMAN (RNA-binding protein 39 OS=Homo sapiens GN=RBM39 PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 2.787e-12
Identity = 30/79 (37.97%), Postives = 54/79 (68.35%), Query Frame = 3
Query:  150 KLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVNYAADR 386
            +L+VG + +N+ ++ LR  F  +G +   ++++D ETGRS+G+GF+TFS  E A  A++ L+G +L GR ++V +  +R
Sbjct:  251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTER 329          
BLAST of FC931011 vs. ExPASy Swiss-Prot
Match: RBPE_ANASP (Putative RNA-binding protein rbpE OS=Anabaena sp. (strain PCC 7120) GN=rbpE PE=3 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 4.754e-12
Identity = 34/78 (43.59%), Postives = 50/78 (64.10%), Query Frame = 3
Query:  153 LFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVNYAADR 386
            ++VG +SY++  + L + F++YG V   ++  DRETGR RGFGFV   +     +AIQALDG +  GR ++VN A  R
Sbjct:    3 IYVGNLSYSVTQDDLTKVFSEYGSVTRVQLPTDRETGRVRGFGFVEMESSAAEDAAIQALDGAEWMGRVLKVNKARPR 80          
BLAST of FC931011 vs. ExPASy Swiss-Prot
Match: HNRGT_HUMAN (RNA-binding motif protein, X-linked-like-2 OS=Homo sapiens GN=RBMXL2 PE=1 SV=3)

HSP 1 Score: 70.0922 bits (170), Expect = 6.208e-12
Identity = 31/76 (40.79%), Postives = 50/76 (65.79%), Query Frame = 3
Query:  150 KLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVNYA 377
            KLF+GG++   D+ +L   F KYG + E  ++ DRET +SRGF FVTF +  +A +A + ++G+ L G+ ++V  A
Sbjct:    9 KLFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKAAARDMNGKSLDGKAIKVAQA 84          
BLAST of FC931011 vs. ExPASy Swiss-Prot
Match: TRA2A_MOUSE (Transformer-2 protein homolog alpha OS=Mus musculus GN=Tra2a PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.059e-11
Identity = 30/75 (40.00%), Postives = 50/75 (66.67%), Query Frame = 3
Query:  153 LFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVNYA 377
            L V G+S    +  LRE F++YG ++   ++ D+ TGRSRGF FV F  ++++  A++  +G +L GRR+RV+Y+
Sbjct:  119 LGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIRVDYS 193          
BLAST of FC931011 vs. ExPASy Swiss-Prot
Match: TRA2A_HUMAN (Transformer-2 protein homolog alpha OS=Homo sapiens GN=TRA2A PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.059e-11
Identity = 30/75 (40.00%), Postives = 50/75 (66.67%), Query Frame = 3
Query:  153 LFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVNYA 377
            L V G+S    +  LRE F++YG ++   ++ D+ TGRSRGF FV F  ++++  A++  +G +L GRR+RV+Y+
Sbjct:  121 LGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIRVDYS 195          
The following BLAST results are available for this feature:
BLAST of FC931011 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
RBPA_ANASP2.134e-1243.59Putative RNA-binding protein rbpA OS=Anabaena sp. ... [more]
TIA1_MOUSE2.787e-1236.26Nucleolysin TIA-1 OS=Mus musculus GN=Tia1 PE=1 SV=... [more]
TIA1_HUMAN2.787e-1236.26Nucleolysin TIA-1 isoform p40 OS=Homo sapiens GN=T... [more]
RBM39_PONAB2.787e-1237.97RNA-binding protein 39 OS=Pongo abelii GN=RBM39 PE... [more]
RBM39_MOUSE2.787e-1237.97RNA-binding protein 39 OS=Mus musculus GN=Rbm39 PE... [more]
RBM39_HUMAN2.787e-1237.97RNA-binding protein 39 OS=Homo sapiens GN=RBM39 PE... [more]
RBPE_ANASP4.754e-1243.59Putative RNA-binding protein rbpE OS=Anabaena sp. ... [more]
HNRGT_HUMAN6.208e-1240.79RNA-binding motif protein, X-linked-like-2 OS=Homo... [more]
TRA2A_MOUSE1.059e-1140.00Transformer-2 protein homolog alpha OS=Mus musculu... [more]
TRA2A_HUMAN1.059e-1140.00Transformer-2 protein homolog alpha OS=Homo sapien... [more]

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Properties
Property NameValue
Genbank descriptionC34100D11EF PostHarvP1 Citrus clementina cDNA clone C34100D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931011 ID=FC931011; Name=FC931011; organism=Citrus clementina; type=EST; length=495bp
GGTTTCTTCTTTCACAAAAGGTTATTATAATGGCTTTCTTTAGTAAGGTT
GGGAATATACTTAGGCAGACTGCTGGCAAGCGGATCAGTTGTGAATCATT
TATATCCAACCCATCCATCTACCAAGCAATACGATGCATGTCATCTTCGA
AACTTTTTGTTGGAGGCATTTCATATAACATGGATGACAATAGCTTGAGA
GAAGCTTTTGCTAAATATGGTTATGTCAATGAAGCAAGAATCATTTTGGA
TCGTGAAACTGGTAGATCCAGAGGATTTGGTTTTGTCACATTCAGCACTG
TGGAGGAGGCGTCTAGTGCCATCCAAGCCTTGGATGGACAGGATCTTCAT
GGCCGTCGTGTAAGGGTGAATTATGCAGCTGATAGAAATCGTGGCTATGG
AGGTGGCGGCTTTGGAGGCGGTGGTTACGGAGGTGGTGGCTACGGTGGTG
GTGGTGGTGGTTATGGAGGTGGTGGCTATGGTGGTGGAGGTTATG
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