FC931011
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC931011 vs. ExPASy Swiss-Prot
Match: RBPA_ANASP (Putative RNA-binding protein rbpA OS=Anabaena sp. (strain PCC 7120) GN=rbpA PE=3 SV=3) HSP 1 Score: 71.633 bits (174), Expect = 2.134e-12 Identity = 34/78 (43.59%), Postives = 51/78 (65.38%), Query Frame = 3 Query: 153 LFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVNYAADR 386 ++VG +SY + ++L FA+YG V ++ DRETG+ RGFGFV + E ++AI+ALDG + GR ++VN A R Sbjct: 3 IYVGNLSYEVTQDTLSAVFAEYGTVKRVQLPTDRETGQPRGFGFVEMGSEAEEAAAIEALDGAEWMGRDLKVNKAKPR 80
BLAST of FC931011 vs. ExPASy Swiss-Prot
Match: TIA1_MOUSE (Nucleolysin TIA-1 OS=Mus musculus GN=Tia1 PE=1 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 2.787e-12 Identity = 33/91 (36.26%), Postives = 57/91 (62.64%), Query Frame = 3 Query: 105 SNPSIYQAIRCMSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVNYA 377 S+ ++ R +FVG +S + ++ AFA +G +++AR++ D TG+S+G+GFV+F +A +AIQ + GQ L GR++R N+A Sbjct: 92 SSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 182
BLAST of FC931011 vs. ExPASy Swiss-Prot
Match: TIA1_HUMAN (Nucleolysin TIA-1 isoform p40 OS=Homo sapiens GN=TIA1 PE=1 SV=3) HSP 1 Score: 71.2478 bits (173), Expect = 2.787e-12 Identity = 33/91 (36.26%), Postives = 57/91 (62.64%), Query Frame = 3 Query: 105 SNPSIYQAIRCMSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVNYA 377 S+ ++ R +FVG +S + ++ AFA +G +++AR++ D TG+S+G+GFV+F +A +AIQ + GQ L GR++R N+A Sbjct: 92 SSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 182
BLAST of FC931011 vs. ExPASy Swiss-Prot
Match: RBM39_PONAB (RNA-binding protein 39 OS=Pongo abelii GN=RBM39 PE=2 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 2.787e-12 Identity = 30/79 (37.97%), Postives = 54/79 (68.35%), Query Frame = 3 Query: 150 KLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVNYAADR 386 +L+VG + +N+ ++ LR F +G + ++++D ETGRS+G+GF+TFS E A A++ L+G +L GR ++V + +R Sbjct: 251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTER 329
BLAST of FC931011 vs. ExPASy Swiss-Prot
Match: RBM39_MOUSE (RNA-binding protein 39 OS=Mus musculus GN=Rbm39 PE=1 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 2.787e-12 Identity = 30/79 (37.97%), Postives = 54/79 (68.35%), Query Frame = 3 Query: 150 KLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVNYAADR 386 +L+VG + +N+ ++ LR F +G + ++++D ETGRS+G+GF+TFS E A A++ L+G +L GR ++V + +R Sbjct: 251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTER 329
BLAST of FC931011 vs. ExPASy Swiss-Prot
Match: RBM39_HUMAN (RNA-binding protein 39 OS=Homo sapiens GN=RBM39 PE=1 SV=2) HSP 1 Score: 71.2478 bits (173), Expect = 2.787e-12 Identity = 30/79 (37.97%), Postives = 54/79 (68.35%), Query Frame = 3 Query: 150 KLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVNYAADR 386 +L+VG + +N+ ++ LR F +G + ++++D ETGRS+G+GF+TFS E A A++ L+G +L GR ++V + +R Sbjct: 251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTER 329
BLAST of FC931011 vs. ExPASy Swiss-Prot
Match: RBPE_ANASP (Putative RNA-binding protein rbpE OS=Anabaena sp. (strain PCC 7120) GN=rbpE PE=3 SV=3) HSP 1 Score: 70.4774 bits (171), Expect = 4.754e-12 Identity = 34/78 (43.59%), Postives = 50/78 (64.10%), Query Frame = 3 Query: 153 LFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVNYAADR 386 ++VG +SY++ + L + F++YG V ++ DRETGR RGFGFV + +AIQALDG + GR ++VN A R Sbjct: 3 IYVGNLSYSVTQDDLTKVFSEYGSVTRVQLPTDRETGRVRGFGFVEMESSAAEDAAIQALDGAEWMGRVLKVNKARPR 80
BLAST of FC931011 vs. ExPASy Swiss-Prot
Match: HNRGT_HUMAN (RNA-binding motif protein, X-linked-like-2 OS=Homo sapiens GN=RBMXL2 PE=1 SV=3) HSP 1 Score: 70.0922 bits (170), Expect = 6.208e-12 Identity = 31/76 (40.79%), Postives = 50/76 (65.79%), Query Frame = 3 Query: 150 KLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVNYA 377 KLF+GG++ D+ +L F KYG + E ++ DRET +SRGF FVTF + +A +A + ++G+ L G+ ++V A Sbjct: 9 KLFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKAAARDMNGKSLDGKAIKVAQA 84
BLAST of FC931011 vs. ExPASy Swiss-Prot
Match: TRA2A_MOUSE (Transformer-2 protein homolog alpha OS=Mus musculus GN=Tra2a PE=1 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 1.059e-11 Identity = 30/75 (40.00%), Postives = 50/75 (66.67%), Query Frame = 3 Query: 153 LFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVNYA 377 L V G+S + LRE F++YG ++ ++ D+ TGRSRGF FV F ++++ A++ +G +L GRR+RV+Y+ Sbjct: 119 LGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIRVDYS 193
BLAST of FC931011 vs. ExPASy Swiss-Prot
Match: TRA2A_HUMAN (Transformer-2 protein homolog alpha OS=Homo sapiens GN=TRA2A PE=1 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 1.059e-11 Identity = 30/75 (40.00%), Postives = 50/75 (66.67%), Query Frame = 3 Query: 153 LFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVNYA 377 L V G+S + LRE F++YG ++ ++ D+ TGRSRGF FV F ++++ A++ +G +L GRR+RV+Y+ Sbjct: 121 LGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIRVDYS 195 The following BLAST results are available for this feature:
BLAST of FC931011 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 85
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Sequences
The
following sequences are available for this feature:
EST sequence >FC931011 ID=FC931011; Name=FC931011; organism=Citrus clementina; type=EST; length=495bpback to top |