FC931011

Overview
NameFC931011
Unique NameFC931011
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length495
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931011 vs. ExPASy Swiss-Prot
Match: NSR1_YEAST (Nuclear localization sequence-binding protein OS=Saccharomyces cerevisiae GN=NSR1 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.059e-11
Identity = 38/115 (33.04%), Postives = 65/115 (56.52%), Query Frame = 3
Query:   63 RQTAGKRISCESFISNPS-------IYQAIRCMSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVNYAADR 386
            ++  G+ I+C+   S P+        +       S  LF+G +S+N D +++ E FAK+G V   RI    ET + +GFG+V FS +E+A  A+ AL G+ +  R VR+++++ R
Sbjct:  232 KEIDGRPINCDMSTSKPAGNNDRAKKFGDTPSEPSDTLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYIDNRPVRLDFSSPR 346          
BLAST of FC931011 vs. ExPASy Swiss-Prot
Match: HNRGT_MACFA (RNA-binding motif protein, X-linked-like-2 OS=Macaca fascicularis GN=RBMXL2 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.059e-11
Identity = 31/76 (40.79%), Postives = 49/76 (64.47%), Query Frame = 3
Query:  150 KLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVNYA 377
            KLF+GG++   D+ +L   F KYG + E  ++ DRET +SRGF FVTF +   A +A + ++G+ L G+ ++V  A
Sbjct:    9 KLFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPANAKAAARDMNGKSLDGKAIKVAQA 84          
BLAST of FC931011 vs. ExPASy Swiss-Prot
Match: HNRPG_PANTR (Heterogeneous nuclear ribonucleoprotein G OS=Pan troglodytes GN=RBMX PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.806e-11
Identity = 30/76 (39.47%), Postives = 49/76 (64.47%), Query Frame = 3
Query:  150 KLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVNYA 377
            KLF+GG++   ++ +L   F KYG + E  ++ DRET +SRGF FVTF +  +A  A + ++G+ L G+ ++V  A
Sbjct:    9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQA 84          
BLAST of FC931011 vs. ExPASy Swiss-Prot
Match: HNRPG_HUMAN (Heterogeneous nuclear ribonucleoprotein G OS=Homo sapiens GN=RBMX PE=1 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 1.806e-11
Identity = 30/76 (39.47%), Postives = 49/76 (64.47%), Query Frame = 3
Query:  150 KLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVNYA 377
            KLF+GG++   ++ +L   F KYG + E  ++ DRET +SRGF FVTF +  +A  A + ++G+ L G+ ++V  A
Sbjct:    9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQA 84          
BLAST of FC931011 vs. ExPASy Swiss-Prot
Match: YOCE_SCHPO (Uncharacterized RNA-binding protein C4F6.14 OS=Schizosaccharomyces pombe GN=SPBC4F6.14 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.081e-11
Identity = 32/84 (38.10%), Postives = 52/84 (61.90%), Query Frame = 3
Query:  141 SSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVNYAADRNR 392
            S+S LFV  +++    + L   F+  G +  A ++ + ETG +RG+GFVTFS +E+A  A + L  + LHGR +R+++A  R R
Sbjct:    3 SNSTLFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKELKNKKLHGRILRLDFATPRKR 86          
BLAST of FC931011 vs. ExPASy Swiss-Prot
Match: RMXL3_PANTR (RNA-binding motif protein, X-linked-like-3 OS=Pan troglodytes GN=RBMXL3 PE=4 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.081e-11
Identity = 30/73 (41.10%), Postives = 50/73 (68.49%), Query Frame = 3
Query:  150 KLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRV 368
            KLFVGG++   D+ +L+  F KYG++ +  +I DR+T +SRGF FVTF +  +A +A + ++G+ L G+ + V
Sbjct:    9 KLFVGGLNLKTDEKALKAEFGKYGHIIKVFLIKDRKTNKSRGFAFVTFESPADAKAAARDMNGKYLDGKAIMV 81          
BLAST of FC931011 vs. ExPASy Swiss-Prot
Match: RBM23_HUMAN (Probable RNA-binding protein 23 OS=Homo sapiens GN=RBM23 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.081e-11
Identity = 30/79 (37.97%), Postives = 53/79 (67.09%), Query Frame = 3
Query:  150 KLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVNYAADR 386
            +L+VG + +N+ ++ LR  F  +G ++   ++ D +TGRS+G+GF+TFS  E A  A++ L+G +L GR +RV +  +R
Sbjct:  264 RLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTER 342          
BLAST of FC931011 vs. ExPASy Swiss-Prot
Match: NUCL_XENLA (Nucleolin OS=Xenopus laevis GN=ncl PE=2 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 3.081e-11
Identity = 36/78 (46.15%), Postives = 55/78 (70.51%), Query Frame = 3
Query:  144 SSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVNYA 377
            S  LFV G+S +  + +L+EAF   G VN ARI+ DR+TG S+GFGFV FST E+A +A +A++  ++ G +V +++A
Sbjct:  502 SKTLFVRGLSEDTTEETLKEAFD--GSVN-ARIVTDRDTGASKGFGFVDFSTAEDAKAAKEAMEDGEIDGNKVTLDFA 576          
BLAST of FC931011 vs. ExPASy Swiss-Prot
Match: GAR2_SCHPO (Protein gar2 OS=Schizosaccharomyces pombe GN=gar2 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 3.081e-11
Identity = 31/78 (39.74%), Postives = 53/78 (67.95%), Query Frame = 3
Query:  153 LFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVNYAADR 386
            +FVG +S+N+DD  L + F +YG +  AR+I+D ++GRS+G+G+V F T E A +A+ A   +++ GR V ++ +  R
Sbjct:  265 VFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAANGTKEIDGRMVNLDLSNPR 342          
BLAST of FC931011 vs. ExPASy Swiss-Prot
Match: ROA3_RAT (Heterogeneous nuclear ribonucleoprotein A3 OS=Rattus norvegicus GN=Hnrnpa3 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.024e-11
Identity = 34/74 (45.95%), Postives = 51/74 (68.92%), Query Frame = 3
Query:  150 KLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQA----LDGQDLHGRR 359
            KLF+GG+S+   D+SLRE F K+G + +  ++ D +T RSRGFGFVT+S VEE  +A+ A    +DG+ +  +R
Sbjct:   36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKR 109          
The following BLAST results are available for this feature:
BLAST of FC931011 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
NSR1_YEAST1.059e-1133.04Nuclear localization sequence-binding protein OS=S... [more]
HNRGT_MACFA1.059e-1140.79RNA-binding motif protein, X-linked-like-2 OS=Maca... [more]
HNRPG_PANTR1.806e-1139.47Heterogeneous nuclear ribonucleoprotein G OS=Pan t... [more]
HNRPG_HUMAN1.806e-1139.47Heterogeneous nuclear ribonucleoprotein G OS=Homo ... [more]
YOCE_SCHPO3.081e-1138.10Uncharacterized RNA-binding protein C4F6.14 OS=Sch... [more]
RMXL3_PANTR3.081e-1141.10RNA-binding motif protein, X-linked-like-3 OS=Pan ... [more]
RBM23_HUMAN3.081e-1137.97Probable RNA-binding protein 23 OS=Homo sapiens GN... [more]
NUCL_XENLA3.081e-1146.15Nucleolin OS=Xenopus laevis GN=ncl PE=2 SV=3[more]
GAR2_SCHPO3.081e-1139.74Protein gar2 OS=Schizosaccharomyces pombe GN=gar2 ... [more]
ROA3_RAT4.024e-1145.95Heterogeneous nuclear ribonucleoprotein A3 OS=Ratt... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34100D11EF PostHarvP1 Citrus clementina cDNA clone C34100D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931011 ID=FC931011; Name=FC931011; organism=Citrus clementina; type=EST; length=495bp
GGTTTCTTCTTTCACAAAAGGTTATTATAATGGCTTTCTTTAGTAAGGTT
GGGAATATACTTAGGCAGACTGCTGGCAAGCGGATCAGTTGTGAATCATT
TATATCCAACCCATCCATCTACCAAGCAATACGATGCATGTCATCTTCGA
AACTTTTTGTTGGAGGCATTTCATATAACATGGATGACAATAGCTTGAGA
GAAGCTTTTGCTAAATATGGTTATGTCAATGAAGCAAGAATCATTTTGGA
TCGTGAAACTGGTAGATCCAGAGGATTTGGTTTTGTCACATTCAGCACTG
TGGAGGAGGCGTCTAGTGCCATCCAAGCCTTGGATGGACAGGATCTTCAT
GGCCGTCGTGTAAGGGTGAATTATGCAGCTGATAGAAATCGTGGCTATGG
AGGTGGCGGCTTTGGAGGCGGTGGTTACGGAGGTGGTGGCTACGGTGGTG
GTGGTGGTGGTTATGGAGGTGGTGGCTATGGTGGTGGAGGTTATG
back to top