FC931011

Overview
NameFC931011
Unique NameFC931011
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length495
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931011 vs. ExPASy Swiss-Prot
Match: ROA3_MOUSE (Heterogeneous nuclear ribonucleoprotein A3 OS=Mus musculus GN=Hnrnpa3 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.024e-11
Identity = 34/74 (45.95%), Postives = 51/74 (68.92%), Query Frame = 3
Query:  150 KLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQA----LDGQDLHGRR 359
            KLF+GG+S+   D+SLRE F K+G + +  ++ D +T RSRGFGFVT+S VEE  +A+ A    +DG+ +  +R
Sbjct:   36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKR 109          
BLAST of FC931011 vs. ExPASy Swiss-Prot
Match: ROA3_HUMAN (Heterogeneous nuclear ribonucleoprotein A3 OS=Homo sapiens GN=HNRNPA3 PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 4.024e-11
Identity = 34/74 (45.95%), Postives = 51/74 (68.92%), Query Frame = 3
Query:  150 KLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQA----LDGQDLHGRR 359
            KLF+GG+S+   D+SLRE F K+G + +  ++ D +T RSRGFGFVT+S VEE  +A+ A    +DG+ +  +R
Sbjct:   36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKR 109          
BLAST of FC931011 vs. ExPASy Swiss-Prot
Match: PABP_MAGGR (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Magnaporthe grisea GN=PAB1 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.024e-11
Identity = 31/81 (38.27%), Postives = 52/81 (64.20%), Query Frame = 3
Query:  147 SKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVNYAADRN 389
            + ++V  I+  + D+  R  F KYG V  + +  D+ETG+SRGFGFV F++ E+AS A+Q L+ ++ HG+ + V  A  ++
Sbjct:  242 TNIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVQELNEKEFHGQNLYVGRAQKKH 322          
BLAST of FC931011 vs. ExPASy Swiss-Prot
Match: TIAR_MOUSE (Nucleolysin TIAR OS=Mus musculus GN=Tial1 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 5.256e-11
Identity = 30/75 (40.00%), Postives = 51/75 (68.00%), Query Frame = 3
Query:  153 LFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVNYA 377
            +FVG +S  +    ++ AFA +G +++AR++ D  TG+S+G+GFV+F    +A +AI  + GQ L GR++R N+A
Sbjct:  116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWA 190          
BLAST of FC931011 vs. ExPASy Swiss-Prot
Match: TIAR_HUMAN (Nucleolysin TIAR OS=Homo sapiens GN=TIAL1 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 5.256e-11
Identity = 30/75 (40.00%), Postives = 51/75 (68.00%), Query Frame = 3
Query:  153 LFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVNYA 377
            +FVG +S  +    ++ AFA +G +++AR++ D  TG+S+G+GFV+F    +A +AI  + GQ L GR++R N+A
Sbjct:   99 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWA 173          
BLAST of FC931011 vs. ExPASy Swiss-Prot
Match: RRP2_SPIOL (30S ribosomal protein 2, chloroplastic OS=Spinacia oleracea GN=PSRP2 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 5.256e-11
Identity = 29/74 (39.19%), Postives = 52/74 (70.27%), Query Frame = 3
Query:  150 KLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVN 371
            +L+VG I  N++++ LR    ++G +  A ++ D+ +GRSR FGFVT  TVE+A++ I+ L+  ++ GR+++VN
Sbjct:   85 RLYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDKYSGRSRRFGFVTMKTVEDANAVIEKLNDTEIGGRKIKVN 158          
BLAST of FC931011 vs. ExPASy Swiss-Prot
Match: PPIE_PONAB (Peptidyl-prolyl cis-trans isomerase E OS=Pongo abelii GN=PPIE PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 5.256e-11
Identity = 32/75 (42.67%), Postives = 48/75 (64.00%), Query Frame = 3
Query:  153 LFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVNYA 377
            L+VGG++  +DD  L  AF  +G + + +I LD ET + RGF FV F   E+A++AI  ++  +L GR +RVN A
Sbjct:    8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 82          
BLAST of FC931011 vs. ExPASy Swiss-Prot
Match: PPIE_MOUSE (Peptidyl-prolyl cis-trans isomerase E OS=Mus musculus GN=Ppie PE=2 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 5.256e-11
Identity = 32/75 (42.67%), Postives = 48/75 (64.00%), Query Frame = 3
Query:  153 LFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVNYA 377
            L+VGG++  +DD  L  AF  +G + + +I LD ET + RGF FV F   E+A++AI  ++  +L GR +RVN A
Sbjct:    8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 82          
BLAST of FC931011 vs. ExPASy Swiss-Prot
Match: PPIE_HUMAN (Peptidyl-prolyl cis-trans isomerase E OS=Homo sapiens GN=PPIE PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 5.256e-11
Identity = 32/75 (42.67%), Postives = 48/75 (64.00%), Query Frame = 3
Query:  153 LFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVNYA 377
            L+VGG++  +DD  L  AF  +G + + +I LD ET + RGF FV F   E+A++AI  ++  +L GR +RVN A
Sbjct:    8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 82          
BLAST of FC931011 vs. ExPASy Swiss-Prot
Match: PPIE_BOVIN (Peptidyl-prolyl cis-trans isomerase E OS=Bos taurus GN=PPIE PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 5.256e-11
Identity = 32/75 (42.67%), Postives = 48/75 (64.00%), Query Frame = 3
Query:  153 LFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVNYA 377
            L+VGG++  +DD  L  AF  +G + + +I LD ET + RGF FV F   E+A++AI  ++  +L GR +RVN A
Sbjct:    8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 82          
The following BLAST results are available for this feature:
BLAST of FC931011 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
ROA3_MOUSE4.024e-1145.95Heterogeneous nuclear ribonucleoprotein A3 OS=Mus ... [more]
ROA3_HUMAN4.024e-1145.95Heterogeneous nuclear ribonucleoprotein A3 OS=Homo... [more]
PABP_MAGGR4.024e-1138.27Polyadenylate-binding protein, cytoplasmic and nuc... [more]
TIAR_MOUSE5.256e-1140.00Nucleolysin TIAR OS=Mus musculus GN=Tial1 PE=2 SV=... [more]
TIAR_HUMAN5.256e-1140.00Nucleolysin TIAR OS=Homo sapiens GN=TIAL1 PE=1 SV=... [more]
RRP2_SPIOL5.256e-1139.1930S ribosomal protein 2, chloroplastic OS=Spinacia... [more]
PPIE_PONAB5.256e-1142.67Peptidyl-prolyl cis-trans isomerase E OS=Pongo abe... [more]
PPIE_MOUSE5.256e-1142.67Peptidyl-prolyl cis-trans isomerase E OS=Mus muscu... [more]
PPIE_HUMAN5.256e-1142.67Peptidyl-prolyl cis-trans isomerase E OS=Homo sapi... [more]
PPIE_BOVIN5.256e-1142.67Peptidyl-prolyl cis-trans isomerase E OS=Bos tauru... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34100D11EF PostHarvP1 Citrus clementina cDNA clone C34100D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931011 ID=FC931011; Name=FC931011; organism=Citrus clementina; type=EST; length=495bp
GGTTTCTTCTTTCACAAAAGGTTATTATAATGGCTTTCTTTAGTAAGGTT
GGGAATATACTTAGGCAGACTGCTGGCAAGCGGATCAGTTGTGAATCATT
TATATCCAACCCATCCATCTACCAAGCAATACGATGCATGTCATCTTCGA
AACTTTTTGTTGGAGGCATTTCATATAACATGGATGACAATAGCTTGAGA
GAAGCTTTTGCTAAATATGGTTATGTCAATGAAGCAAGAATCATTTTGGA
TCGTGAAACTGGTAGATCCAGAGGATTTGGTTTTGTCACATTCAGCACTG
TGGAGGAGGCGTCTAGTGCCATCCAAGCCTTGGATGGACAGGATCTTCAT
GGCCGTCGTGTAAGGGTGAATTATGCAGCTGATAGAAATCGTGGCTATGG
AGGTGGCGGCTTTGGAGGCGGTGGTTACGGAGGTGGTGGCTACGGTGGTG
GTGGTGGTGGTTATGGAGGTGGTGGCTATGGTGGTGGAGGTTATG
back to top