FC931011

Overview
NameFC931011
Unique NameFC931011
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length495
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931011 vs. ExPASy Swiss-Prot
Match: TRA2B_RAT (Transformer-2 protein homolog beta OS=Rattus norvegicus GN=Tra2b PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 6.864e-11
Identity = 31/75 (41.33%), Postives = 49/75 (65.33%), Query Frame = 3
Query:  153 LFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVNYA 377
            L V G+S    +  LRE F+KYG + +  I+ D+++ RSRGF FV F  V++A  A +  +G +L GRR+RV+++
Sbjct:  120 LGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFS 194          
BLAST of FC931011 vs. ExPASy Swiss-Prot
Match: TRA2B_MOUSE (Transformer-2 protein homolog beta OS=Mus musculus GN=Tra2b PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 6.864e-11
Identity = 31/75 (41.33%), Postives = 49/75 (65.33%), Query Frame = 3
Query:  153 LFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVNYA 377
            L V G+S    +  LRE F+KYG + +  I+ D+++ RSRGF FV F  V++A  A +  +G +L GRR+RV+++
Sbjct:  120 LGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFS 194          
BLAST of FC931011 vs. ExPASy Swiss-Prot
Match: TRA2B_HUMAN (Transformer-2 protein homolog beta OS=Homo sapiens GN=TRA2B PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 6.864e-11
Identity = 31/75 (41.33%), Postives = 49/75 (65.33%), Query Frame = 3
Query:  153 LFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVNYA 377
            L V G+S    +  LRE F+KYG + +  I+ D+++ RSRGF FV F  V++A  A +  +G +L GRR+RV+++
Sbjct:  120 LGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFS 194          
BLAST of FC931011 vs. ExPASy Swiss-Prot
Match: TRA2B_BOVIN (Transformer-2 protein homolog beta OS=Bos taurus GN=TRA2B PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 6.864e-11
Identity = 31/75 (41.33%), Postives = 49/75 (65.33%), Query Frame = 3
Query:  153 LFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVNYA 377
            L V G+S    +  LRE F+KYG + +  I+ D+++ RSRGF FV F  V++A  A +  +G +L GRR+RV+++
Sbjct:  120 LGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFS 194          
BLAST of FC931011 vs. ExPASy Swiss-Prot
Match: HNRPG_RAT (Heterogeneous nuclear ribonucleoprotein G OS=Rattus norvegicus GN=Rbmx PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 6.864e-11
Identity = 29/76 (38.16%), Postives = 48/76 (63.16%), Query Frame = 3
Query:  150 KLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVNYA 377
            KLF+GG++   ++ +L   F KYG + E  ++ DRET +SRGF FVTF +  +A    + ++G+ L G+ ++V  A
Sbjct:    9 KLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDVARDMNGKSLDGKAIKVEQA 84          
BLAST of FC931011 vs. ExPASy Swiss-Prot
Match: DAZP1_MOUSE (DAZ-associated protein 1 OS=Mus musculus GN=Dazap1 PE=2 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 6.864e-11
Identity = 34/82 (41.46%), Postives = 48/82 (58.54%), Query Frame = 3
Query:  144 SSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVNYAADRN 389
            S+K+FVGGI +N  +  LRE F K+G V E  +I D E  R RGFGF+TF   +    A+  +   D+ G++V V  A  R+
Sbjct:  112 SNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRAEPRD 192          
BLAST of FC931011 vs. ExPASy Swiss-Prot
Match: DAZP1_HUMAN (DAZ-associated protein 1 OS=Homo sapiens GN=DAZAP1 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 6.864e-11
Identity = 34/82 (41.46%), Postives = 48/82 (58.54%), Query Frame = 3
Query:  144 SSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVNYAADRN 389
            S+K+FVGGI +N  +  LRE F K+G V E  +I D E  R RGFGF+TF   +    A+  +   D+ G++V V  A  R+
Sbjct:  112 SNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRAEPRD 192          
BLAST of FC931011 vs. ExPASy Swiss-Prot
Match: CSTF2_PONAB (Cleavage stimulation factor 64 kDa subunit OS=Pongo abelii GN=CSTF2 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 6.864e-11
Identity = 33/98 (33.67%), Postives = 62/98 (63.27%), Query Frame = 3
Query:  102 ISNPSIYQAIRCMSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRV-NYAADRNR 392
            + +P++ +++R      +FVG I Y   +  L++ F++ G V   R++ DRETG+ +G+GF  +   E A SA++ L+G++  GR +RV N A+++N+
Sbjct:    6 VRDPAVDRSLR-----SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNK 98          
BLAST of FC931011 vs. ExPASy Swiss-Prot
Match: CSTF2_MOUSE (Cleavage stimulation factor 64 kDa subunit OS=Mus musculus GN=Cstf2 PE=1 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 6.864e-11
Identity = 33/98 (33.67%), Postives = 62/98 (63.27%), Query Frame = 3
Query:  102 ISNPSIYQAIRCMSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRV-NYAADRNR 392
            + +P++ +++R      +FVG I Y   +  L++ F++ G V   R++ DRETG+ +G+GF  +   E A SA++ L+G++  GR +RV N A+++N+
Sbjct:    6 VRDPAVDRSLR-----SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNK 98          
BLAST of FC931011 vs. ExPASy Swiss-Prot
Match: CSTF2_HUMAN (Cleavage stimulation factor 64 kDa subunit OS=Homo sapiens GN=CSTF2 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 6.864e-11
Identity = 33/98 (33.67%), Postives = 62/98 (63.27%), Query Frame = 3
Query:  102 ISNPSIYQAIRCMSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRV-NYAADRNR 392
            + +P++ +++R      +FVG I Y   +  L++ F++ G V   R++ DRETG+ +G+GF  +   E A SA++ L+G++  GR +RV N A+++N+
Sbjct:    6 VRDPAVDRSLR-----SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNK 98          
The following BLAST results are available for this feature:
BLAST of FC931011 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
TRA2B_RAT6.864e-1141.33Transformer-2 protein homolog beta OS=Rattus norve... [more]
TRA2B_MOUSE6.864e-1141.33Transformer-2 protein homolog beta OS=Mus musculus... [more]
TRA2B_HUMAN6.864e-1141.33Transformer-2 protein homolog beta OS=Homo sapiens... [more]
TRA2B_BOVIN6.864e-1141.33Transformer-2 protein homolog beta OS=Bos taurus G... [more]
HNRPG_RAT6.864e-1138.16Heterogeneous nuclear ribonucleoprotein G OS=Rattu... [more]
DAZP1_MOUSE6.864e-1141.46DAZ-associated protein 1 OS=Mus musculus GN=Dazap1... [more]
DAZP1_HUMAN6.864e-1141.46DAZ-associated protein 1 OS=Homo sapiens GN=DAZAP1... [more]
CSTF2_PONAB6.864e-1133.67Cleavage stimulation factor 64 kDa subunit OS=Pong... [more]
CSTF2_MOUSE6.864e-1133.67Cleavage stimulation factor 64 kDa subunit OS=Mus ... [more]
CSTF2_HUMAN6.864e-1133.67Cleavage stimulation factor 64 kDa subunit OS=Homo... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34100D11EF PostHarvP1 Citrus clementina cDNA clone C34100D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931011 ID=FC931011; Name=FC931011; organism=Citrus clementina; type=EST; length=495bp
GGTTTCTTCTTTCACAAAAGGTTATTATAATGGCTTTCTTTAGTAAGGTT
GGGAATATACTTAGGCAGACTGCTGGCAAGCGGATCAGTTGTGAATCATT
TATATCCAACCCATCCATCTACCAAGCAATACGATGCATGTCATCTTCGA
AACTTTTTGTTGGAGGCATTTCATATAACATGGATGACAATAGCTTGAGA
GAAGCTTTTGCTAAATATGGTTATGTCAATGAAGCAAGAATCATTTTGGA
TCGTGAAACTGGTAGATCCAGAGGATTTGGTTTTGTCACATTCAGCACTG
TGGAGGAGGCGTCTAGTGCCATCCAAGCCTTGGATGGACAGGATCTTCAT
GGCCGTCGTGTAAGGGTGAATTATGCAGCTGATAGAAATCGTGGCTATGG
AGGTGGCGGCTTTGGAGGCGGTGGTTACGGAGGTGGTGGCTACGGTGGTG
GTGGTGGTGGTTATGGAGGTGGTGGCTATGGTGGTGGAGGTTATG
back to top