FC931011

Overview
NameFC931011
Unique NameFC931011
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length495
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931011 vs. ExPASy Swiss-Prot
Match: CSTF2_BOVIN (Cleavage stimulation factor 64 kDa subunit OS=Bos taurus GN=CSTF2 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 6.864e-11
Identity = 33/98 (33.67%), Postives = 62/98 (63.27%), Query Frame = 3
Query:  102 ISNPSIYQAIRCMSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRV-NYAADRNR 392
            + +P++ +++R      +FVG I Y   +  L++ F++ G V   R++ DRETG+ +G+GF  +   E A SA++ L+G++  GR +RV N A+++N+
Sbjct:    6 VRDPAVDRSLR-----SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNK 98          
BLAST of FC931011 vs. ExPASy Swiss-Prot
Match: RMXL3_HUMAN (RNA-binding motif protein, X-linked-like-3 OS=Homo sapiens GN=RBMXL3 PE=2 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 8.965e-11
Identity = 28/73 (38.36%), Postives = 50/73 (68.49%), Query Frame = 3
Query:  150 KLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRV 368
            KLF+GG++   D+ +L+  F KYG++ +  ++ DR+T +SRGF FVTF +  +A +A + ++G+ L G+ + V
Sbjct:    9 KLFIGGLNLKTDEKALKAEFGKYGHIIKVFLMKDRKTNKSRGFAFVTFESPADAKAAARDMNGKYLDGKAIMV 81          
BLAST of FC931011 vs. ExPASy Swiss-Prot
Match: EIF3G_YARLI (Eukaryotic translation initiation factor 3 subunit G OS=Yarrowia lipolytica GN=TIF35 PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 8.965e-11
Identity = 31/79 (39.24%), Postives = 46/79 (58.23%), Query Frame = 3
Query:  153 LFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVNYAADRN 389
            L V  +S    D+ LR  F KYG +N   +  DR+TGR RGF FVT++    A +A++A+DG       ++V+Y+  RN
Sbjct:  216 LRVTNLSEEATDDDLRRMFGKYGMINRVYVAKDRDTGRPRGFAFVTYTLKSHAQAALEAMDGHGFDNLIMKVDYSKKRN 294          
BLAST of FC931011 vs. ExPASy Swiss-Prot
Match: CSTFT_MOUSE (Cleavage stimulation factor 64 kDa subunit, tau variant OS=Mus musculus GN=Cstf2t PE=1 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 8.965e-11
Identity = 33/98 (33.67%), Postives = 62/98 (63.27%), Query Frame = 3
Query:  102 ISNPSIYQAIRCMSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRV-NYAADRNR 392
            + +P++ +++R      +FVG I Y   +  L++ F++ G V   R++ DRETG+ +G+GF  +   E A SA++ L+G++  GR +RV N A+++N+
Sbjct:    6 VRDPAMDRSLR-----SVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNK 98          
BLAST of FC931011 vs. ExPASy Swiss-Prot
Match: CSTFT_HUMAN (Cleavage stimulation factor 64 kDa subunit, tau variant OS=Homo sapiens GN=CSTF2T PE=1 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 8.965e-11
Identity = 33/98 (33.67%), Postives = 62/98 (63.27%), Query Frame = 3
Query:  102 ISNPSIYQAIRCMSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRV-NYAADRNR 392
            + +P++ +++R      +FVG I Y   +  L++ F++ G V   R++ DRETG+ +G+GF  +   E A SA++ L+G++  GR +RV N A+++N+
Sbjct:    6 VRDPAMDRSLR-----SVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNK 98          
The following BLAST results are available for this feature:
BLAST of FC931011 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
CSTF2_BOVIN6.864e-1133.67Cleavage stimulation factor 64 kDa subunit OS=Bos ... [more]
RMXL3_HUMAN8.965e-1138.36RNA-binding motif protein, X-linked-like-3 OS=Homo... [more]
EIF3G_YARLI8.965e-1139.24Eukaryotic translation initiation factor 3 subunit... [more]
CSTFT_MOUSE8.965e-1133.67Cleavage stimulation factor 64 kDa subunit, tau va... [more]
CSTFT_HUMAN8.965e-1133.67Cleavage stimulation factor 64 kDa subunit, tau va... [more]

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Properties
Property NameValue
Genbank descriptionC34100D11EF PostHarvP1 Citrus clementina cDNA clone C34100D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931011 ID=FC931011; Name=FC931011; organism=Citrus clementina; type=EST; length=495bp
GGTTTCTTCTTTCACAAAAGGTTATTATAATGGCTTTCTTTAGTAAGGTT
GGGAATATACTTAGGCAGACTGCTGGCAAGCGGATCAGTTGTGAATCATT
TATATCCAACCCATCCATCTACCAAGCAATACGATGCATGTCATCTTCGA
AACTTTTTGTTGGAGGCATTTCATATAACATGGATGACAATAGCTTGAGA
GAAGCTTTTGCTAAATATGGTTATGTCAATGAAGCAAGAATCATTTTGGA
TCGTGAAACTGGTAGATCCAGAGGATTTGGTTTTGTCACATTCAGCACTG
TGGAGGAGGCGTCTAGTGCCATCCAAGCCTTGGATGGACAGGATCTTCAT
GGCCGTCGTGTAAGGGTGAATTATGCAGCTGATAGAAATCGTGGCTATGG
AGGTGGCGGCTTTGGAGGCGGTGGTTACGGAGGTGGTGGCTACGGTGGTG
GTGGTGGTGGTTATGGAGGTGGTGGCTATGGTGGTGGAGGTTATG
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