FC931020

Overview
NameFC931020
Unique NameFC931020
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length708
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14989 contig Ccv1_Contig14989:312..1019. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931020 vs. ExPASy Swiss-Prot
Match: HSFA8_ARATH (Heat stress transcription factor A-8 OS=Arabidopsis thaliana GN=HSFA8 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.336e-11
Identity = 43/135 (31.85%), Postives = 71/135 (52.59%), Query Frame = 1
Query:   22 YGFRKIDPDQWEFANEEFIRGQRHLLKNIHRRKPVHSHSTQSPTPLTET----ERNEFEAKIERLKKENSXXXXXXXXXXGGNHEFEYHVQSVRERLRYLENRQTQMIACLANLLKKPGFSSALNQQAEVHSKKR 414
            YGFRK+D D+WEFAN+ F+RGQ+ LLKN+ RRK V S S QS    T T    E++    +++ LK +                  +  +  + +R++ +E  Q +M++ L  ++K P     L Q  E ++ ++
Sbjct:   79 YGFRKVDADRWEFANDGFVRGQKDLLKNVIRRKNVQS-SEQSKHESTSTTYAQEKSGLWKEVDILKGDKQVLAQELIKVRQYQEVTDTKMLHLEDRVQGMEESQQEMLSFLVMVMKNPSLLVQLLQPKEKNTWRK 212          
BLAST of FC931020 vs. ExPASy Swiss-Prot
Match: HFC1B_ORYSJ (Heat stress transcription factor C-1b OS=Oryza sativa subsp. japonica GN=HSFC1B PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.976e-11
Identity = 45/117 (38.46%), Postives = 62/117 (52.99%), Query Frame = 1
Query:   22 YGFRKIDPDQWEFANEEFIRGQRHLLKNIHRRKPVHSHSTQSPTPLTETE--RNEFEAKIERLKKENSXXXXXXXXXXGGNHEFEYHVQSVRERLRYLENRQTQMIACLANLLKKPG 366
            YGFRK+DPD+WEFA+E F+RGQ  LL  I R+K     +        E E  R   EA ++RL++E                  E  +Q++ +RLR  E+R  QM+A LA L  +PG
Sbjct:   83 YGFRKVDPDRWEFAHESFLRGQAQLLPRIVRKKKKGGAAPGCRELCEEGEEVRGTIEA-VQRLREE--------------QRGMEEELQAMDQRLRAAESRPGQMMAFLAKLADEPG 184          
The following BLAST results are available for this feature:
BLAST of FC931020 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
HSFA8_ARATH1.336e-1131.85Heat stress transcription factor A-8 OS=Arabidopsi... [more]
HFC1B_ORYSJ2.976e-1138.46Heat stress transcription factor C-1b OS=Oryza sat... [more]

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Properties
Property NameValue
Genbank descriptionC34100E09EF PostHarvP1 Citrus clementina cDNA clone C34100E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931020 ID=FC931020; Name=FC931020; organism=Citrus clementina; type=EST; length=708bp
CTGGCCGGGGGAGCTGAATAATATGGATTCAGGAAGATTGATCCTGATCA
GTGGGAGTTTGCAAATGAGGAATTCATACGAGGACAGAGGCATCTCTTAA
AGAACATTCACAGACGCAAGCCAGTTCACAGCCATTCCACGCAGTCTCCC
ACTCCACTAACCGAAACGGAAAGAAATGAATTCGAGGCCAAAATTGAGAG
ACTCAAAAAGGAGAATAGCTTACTTCAATTAGAGCTGCGGAGGCGTGAGG
GTGGAAATCACGAGTTTGAGTATCATGTTCAATCAGTACGCGAGCGTCTA
AGGTACTTGGAAAATCGACAGACGCAAATGATCGCCTGTTTAGCTAACCT
GTTGAAGAAACCGGGATTTTCCTCGGCTCTTAATCAACAAGCAGAAGTTC
ACAGCAAAAAGAGAAGGCTGTTGAGGCCTACGACTATTGAATACTTTGAT
GATGTAAAATCCGCAAGCCTAAGTGTGAATGAACAGAAAGAGAACCCAGA
TGCTACTTCTGATCCATCTCCGGCGTTGAATTTGGAACAAATTGACAGGC
TAGAATCCTCAGTGGACTTTTGGACATTTTTTTTGTACGGCCTTGGGGAA
GCTTTTAATCAAGATGTGTACGATTTTGGGGTATTACGACCAGTGTCTGC
TGTCACCGATGATGAAATTGAAGAGGGTGTGTCATCAGAAGAACACGATG
TGTTATCA
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