FC931024

Overview
NameFC931024
Unique NameFC931024
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length745
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931024_ssr50 microsatellite FC931024_ssr50:50..61. BLAST: Citrus ESTs to Prunus persica proteins V1
FC931024_ssr98 microsatellite FC931024_ssr98:98..109. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of FC931024 vs. ExPASy Swiss-Prot
Match: DNAJ_BREBN (Chaperone protein dnaJ OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.392e-11
Identity = 34/69 (49.28%), Postives = 48/69 (69.57%), Query Frame = 1
Query:  202 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYD 408
            KR LYEVLG+ K+   DEI+ AY+KLA Q HPD        +A+A  +F+E+  AY++LS+P++RA YD
Sbjct:    2 KRDLYEVLGVAKDADADEIKKAYRKLARQYHPDV-----NKEADAEEKFKEVKDAYDILSEPQKRAQYD 65          
BLAST of FC931024 vs. ExPASy Swiss-Prot
Match: DNAJ_BORA1 (Chaperone protein dnaJ OS=Bordetella avium (strain 197N) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.392e-11
Identity = 42/123 (34.15%), Postives = 62/123 (50.41%), Query Frame = 1
Query:  202 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILFSDLNSASNCGPVPNLYSYFSNTAFSGYSDSGKGFYKVYSDLFNKIY 570
            KR  YEVLG+ K+   DE++ AY+KLA++ HPD+         EA  +F+E   AYEVL D ++RA YD +             + G  PN          +G +  G GF   + D+F +I+
Sbjct:    3 KRDYYEVLGVAKDAADDELKKAYRKLAMKYHPDR----NPGNKEAEEKFKEAKEAYEVLGDEQKRAAYDRY------------GHAGVDPN---------SAGGAGMGGGFADAFGDIFGEIF 100          
BLAST of FC931024 vs. ExPASy Swiss-Prot
Match: DNAJ_ACISJ (Chaperone protein dnaJ OS=Acidovorax sp. (strain JS42) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.392e-11
Identity = 40/119 (33.61%), Postives = 61/119 (51.26%), Query Frame = 1
Query:  202 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILFSDLNSASNCGPVPNLYSYFSNTAFSGYSDSGKGFYKVYSDLF 558
            KR  YEVLG+ K  + DEI+ AY+KLA++ HPD+    G +   A  +F+E   AYE+LSD ++RA YD +             + G  PN+          G+    + F  ++ D+F
Sbjct:    3 KRDFYEVLGVPKNASDDEIKKAYRKLAMKYHPDR--NQGDAAKPAEEKFKEAKEAYEILSDAQKRAAYDQY------------GHAGVDPNMRGGMGGA--EGFGGFAEAFGDIFGDMF 105          
BLAST of FC931024 vs. ExPASy Swiss-Prot
Match: DNAJ_ACIAC (Chaperone protein dnaJ OS=Acidovorax avenae subsp. citrulli (strain AAC00-1) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.392e-11
Identity = 40/119 (33.61%), Postives = 61/119 (51.26%), Query Frame = 1
Query:  202 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILFSDLNSASNCGPVPNLYSYFSNTAFSGYSDSGKGFYKVYSDLF 558
            KR  YEVLG+ K  + +EI+ AY+KLA++ HPD+    G +   A  +F+E   AYE+LSDP++RA YD               + G  PN+          G+    + F  ++ D+F
Sbjct:    3 KRDFYEVLGVPKNASDEEIKKAYRKLAMKHHPDR--NQGDAAKPAEEKFKEAKEAYEMLSDPQKRAAYDQF------------GHAGVDPNMRGP-GGAGAEGFGGFAEAFGDIFGDMF 106          
The following BLAST results are available for this feature:
BLAST of FC931024 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
DNAJ_BREBN9.392e-1149.28Chaperone protein dnaJ OS=Brevibacillus brevis (st... [more]
DNAJ_BORA19.392e-1134.15Chaperone protein dnaJ OS=Bordetella avium (strain... [more]
DNAJ_ACISJ9.392e-1133.61Chaperone protein dnaJ OS=Acidovorax sp. (strain J... [more]
DNAJ_ACIAC9.392e-1133.61Chaperone protein dnaJ OS=Acidovorax avenae subsp.... [more]

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Properties
Property NameValue
Genbank descriptionC34100F01EF PostHarvP1 Citrus clementina cDNA clone C34100F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931024 ID=FC931024; Name=FC931024; organism=Citrus clementina; type=EST; length=745bp
AAGGGAAGAGAAACGGTTACACGTTCTTAAAGCGACTATCCAACCCATGC
AACCAACCAACCCTTTCTTCCTGAACCCTAATTACAACAACAAGCAATTA
TTTATTTATATTATTTTAAAGAAGAAAGCCAGCTAAACGAAGCTTCGGGA
GCTGGACCTCGGAGACGGAAAACATCGACGAATTGATCAATGGCATCGGA
AAAGCGATGCCTCTACGAGGTGCTGGGCCTGCGAAAGGAATGCACGACCG
ACGAAATTCGCTCAGCTTACAAGAAGCTTGCGCTGCAGCGCCACCCAGAC
AAGCTGGTCCAATCCGGCTTGAGCCAAGCCGAGGCAACGGCTCAGTTCCA
AGAGCTCGTCCACGCCTATGAGGTCCTCTCCGACCCGAAAGAACGCGCCT
GGTACGACTCTCACCGCTCCCAAATCCTCTTCTCCGATCTTAACTCCGCC
TCCAACTGCGGCCCCGTCCCCAATCTCTACTCCTATTTCTCTAACACCGC
CTTTTCTGGGTATTCGGATTCGGGTAAGGGGTTTTATAAAGTGTATTCGG
ATTTGTTTAATAAGATTTATTTGGTTGAGGTTAGTTATGTGAAGAAATTA
GGGTTAGGATTGGATGTGTTGAGGGAGGCCCCCATAATGGGGAATTTGGA
GTCTCCCTATGGACAGGTTACGGCGTTTTATATTACTGGNTAGGGTTTAG
TACGGTGATGGATTTTTGTTGGGTGGATGAATATGATGTGATGGC
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