FC931030

Overview
NameFC931030
Unique NameFC931030
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length719
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931030 vs. ExPASy Swiss-Prot
Match: EF1A_DESMO (Elongation factor 1-alpha OS=Desulfurococcus mobilis GN=tuf PE=3 SV=1)

HSP 1 Score: 271.552 bits (693), Expect = 3.059e-72
Identity = 132/230 (57.39%), Postives = 170/230 (73.91%), Query Frame = 1
Query:   22 MITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQ 711
            MITG SQAD A+L++ +  G FEAG+S +GQTREHA+LA T+G+ Q+I   NKMDAT P YS+ RY+EI + +  +LK +GY+  KIPF+PIS + G+N+IERS N+ WY GPTL+EALD +  P +P +KPLR+P+QDVY I GIG VPVGRVETGVLK G  + F P+GL  EVK++E HH  + +A PGDN+GFNVK V  KD+KRG VA  S D P   A  FT++
Sbjct:  103 MITGASQADAAILVVSARKGEFEAGMSAEGQTREHAILARTMGINQLIVAINKMDATEPPYSEKRYNEIKEILGKFLKGLGYDVSKIPFIPISAWTGENLIERSPNMPWYNGPTLVEALDTLEVPPKPINKPLRIPIQDVYNISGIGVVPVGRVETGVLKVGDKLVFMPAGLVAEVKTIETHHTKIEKAEPGDNIGFNVKGVEKKDIKRGDVA-GSLDVPPTVADEFTAR 331          
BLAST of FC931030 vs. ExPASy Swiss-Prot
Match: EF1A_STAMF (Elongation factor 1-alpha OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=tuf PE=3 SV=1)

HSP 1 Score: 263.848 bits (673), Expect = 6.378e-70
Identity = 125/230 (54.35%), Postives = 169/230 (73.48%), Query Frame = 1
Query:   22 MITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQ 711
            MITG SQAD A+L++ +  G FEAG+S +GQTREHA+LA T+G+ Q+I   NKMDAT P +S+ RY++I   +  +LK +GY+  K+PF+P+S + GDN+IERS N+ WY GPTL+EALD +  P +P DKPLR+P+QDVY I G+GTVPVGRVETGVL+ G  V F P     EV+S+E HH  + +A PGDN+GFNV+ VS +D++RG VA +  D+P   A  FT++
Sbjct:  102 MITGASQADAALLVVSARKGEFEAGMSPEGQTREHAILAKTMGINQLIVAVNKMDATEPPWSQKRYEQIKTILGKFLKSLGYDISKVPFIPVSAWTGDNLIERSPNMPWYNGPTLVEALDSLEPPPKPIDKPLRIPIQDVYAISGVGTVPVGRVETGVLRVGDKVVFMPPAKVGEVRSIETHHVRIEKAEPGDNIGFNVRGVSKRDIRRGDVAGH-LDNPPTVAEEFTAR 330          
BLAST of FC931030 vs. ExPASy Swiss-Prot
Match: EF1A_IGNH4 (Elongation factor 1-alpha OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=tuf PE=3 SV=1)

HSP 1 Score: 261.151 bits (666), Expect = 4.134e-69
Identity = 127/232 (54.74%), Postives = 172/232 (74.14%), Query Frame = 1
Query:   22 MITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQINEP--KRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQ 711
            MITG SQAD A+L++ +  G FEAG+S +GQTREH LLA T+G+ Q+I   NKMDAT P +S+ RY +IV+ +  ++K +G+  D+IPFVP+S + GDN+I+RS N+ WYKGPTL+EALD +  P  ++    PLR+P+QDVY I G+GTVPVGRVETGVLK G  V F P G+  EV+S+EMHHE + +A+PGDN+GFNV+ VS  D+KRG VA + ++ P   A  FT++
Sbjct:  103 MITGASQADAAILVVSARPGEFEAGMSAEGQTREHILLAKTMGIDQIIVAVNKMDATEPPWSEKRYKQIVETLKKFMKGLGFKVDEIPFVPVSAWTGDNIIKRSENMPWYKGPTLVEALDNLKPPSVEKWAKLPLRIPIQDVYSITGVGTVPVGRVETGVLKVGDKVVFMPPGVGGEVRSIEMHHEKIEQAMPGDNIGFNVRGVSKNDIKRGDVAGHPENPPTV-ADQFTAR 333          
BLAST of FC931030 vs. ExPASy Swiss-Prot
Match: EF1A_AERPE (Elongation factor 1-alpha OS=Aeropyrum pernix GN=tuf PE=3 SV=1)

HSP 1 Score: 260.381 bits (664), Expect = 7.052e-69
Identity = 125/230 (54.35%), Postives = 167/230 (72.61%), Query Frame = 1
Query:   22 MITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQ 711
            MITG SQAD A+L++ +  G FEAG+S +GQTREH LLA T+G++Q+I   NKMDA    Y + RY+ +V  +  ++K +GY  DKIPF+P+S ++GDN+IERS N+ WY GPTL+EALDQ+  P +P DKPLR+P+Q+VY I G GTVPVGRVETGVL+ G  V F P G+  EV+S+EMH++ L +A PGDN+GF V+ VS  D+KRG VA +  D P   A  F ++
Sbjct:  101 MITGASQADAAILVVSARKGEFEAGMSTEGQTREHLLLARTMGIEQIIVAVNKMDAPDVNYDQKRYEFVVSVLKKFMKGLGYQVDKIPFIPVSAWKGDNLIERSPNMPWYNGPTLVEALDQLQPPAKPVDKPLRIPVQNVYSIPGAGTVPVGRVETGVLRVGDKVVFMPPGVVGEVRSIEMHYQQLQQAEPGDNIGFAVRGVSKSDIKRGDVAGH-LDKPPTVAEEFEAR 329          
BLAST of FC931030 vs. ExPASy Swiss-Prot
Match: EF1AS_PORPU (Elongation factor 1-alpha S OS=Porphyra purpurea GN=TEF-S PE=2 SV=1)

HSP 1 Score: 254.218 bits (648), Expect = 5.054e-67
Identity = 140/251 (55.78%), Postives = 172/251 (68.53%), Query Frame = 1
Query:   22 MITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPK----YSKARYDEIVKEVSSYLKKVGYNP------------------DK--------IPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSG-LTTEVKSVEMHHESLLEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDP 681
            MITGTSQAD A+L+ID     FEAGI++ G T+EHALLA+TLGVKQ+    NKMD    K    +++ RY+E+V  +   L K+G+                    DK          FVPISG+ GDNM+E+STN+ WY GPTL E LD +  PKRPT+ PLRLPLQDVYKIGGIGTVPVGRVETG+LK GM VTF P+G    EVKSVEMHH S+ +A+PGDNVGFNVK ++VKD+KRG V  ++K+DP
Sbjct:  102 MITGTSQADVALLVIDGNN--FEAGIAEGGSTKEHALLAYTLGVKQLAVGINKMDDVKDKDGGPWAQGRYNEVVDYLGPELMKIGFKKKDKGDKKKGDKKEKKDKKDKGEKKYVCSATFVPISGWTGDNMLEKSTNMPWYTGPTLFEVLDAMKPPKRPTEDPLRLPLQDVYKIGGIGTVPVGRVETGILKAGMQVTFEPAGKAAVEVKSVEMHHTSVPQAIPGDNVGFNVK-LTVKDIKRGDVCGDTKNDP 349          
BLAST of FC931030 vs. ExPASy Swiss-Prot
Match: EF1A_SULSO (Elongation factor 1-alpha OS=Sulfolobus solfataricus GN=tuf PE=1 SV=3)

HSP 1 Score: 251.521 bits (641), Expect = 3.276e-66
Identity = 120/230 (52.17%), Postives = 161/230 (70.00%), Query Frame = 1
Query:   22 MITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQ 711
            MITG SQAD A+L++ +  G +EAG+S +GQTREH +LA T+G+ Q+I   NKMD T P Y + RY EIV +VS +++  G+N +K+ FVP+    GDN+  RS N+ WY GPTL E LDQ+  P +P DKPLR+P+QDVY I G+GTVPVGRVE+GVLK G  + F P+G   EV+S+E HH  + +A PGDN+GFNV+ V  KD+KRG V  +  + P   A  FT++
Sbjct:  101 MITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPAGDNITHRSENMKWYNGPTLEEYLDQLELPPKPVDKPLRIPIQDVYSISGVGTVPVGRVESGVLKVGDKIVFMPAGKVGEVRSIETHHTKMDKAEPGDNIGFNVRGVEKKDIKRGDVVGHPNNPPTV-ADEFTAR 329          
BLAST of FC931030 vs. ExPASy Swiss-Prot
Match: EF1A_METJA (Elongation factor 1-alpha OS=Methanocaldococcus jannaschii GN=tuf PE=3 SV=1)

HSP 1 Score: 248.054 bits (632), Expect = 3.622e-65
Identity = 127/231 (54.98%), Postives = 167/231 (72.29%), Query Frame = 1
Query:   22 MITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKV-GYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQ 711
            MITG SQAD AVL++D      + GI    QTREH  LA TLG+KQ+    NKMD  T  YS+  Y+++ K +S  L KV GYNPD+I F+P +  +GDN+++RS N+ WYKGPTL+EALD+   P++PT+ PLR+P+QDVY I G+GTVPVGRVETG+L+PG  V F P+G++ EVKS+EMHHE + +A PGDN+GFNV+ VS KD+KRG V  +  D+P   A  FT+Q
Sbjct:  102 MITGASQADAAVLVVDVNDA--KTGIQP--QTREHMFLARTLGIKQIAVAINKMD--TVNYSQEEYEKMKKMLSEQLLKVLGYNPDQIDFIPTASLKGDNVVKRSENMPWYKGPTLVEALDKFQPPEKPTNLPLRIPIQDVYSITGVGTVPVGRVETGILRPGDKVVFEPAGVSGEVKSIEMHHEQIPQAEPGDNIGFNVRGVSKKDIKRGDVCGH-PDNPPTVAEEFTAQ 325          
BLAST of FC931030 vs. ExPASy Swiss-Prot
Match: EF1A_SULTO (Elongation factor 1-alpha OS=Sulfolobus tokodaii GN=tuf PE=3 SV=1)

HSP 1 Score: 247.284 bits (630), Expect = 6.178e-65
Identity = 120/230 (52.17%), Postives = 160/230 (69.57%), Query Frame = 1
Query:   22 MITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQ 711
            MITG SQAD A+L++ +  G +EAG+S +GQTREH +LA T+G+ Q+I   NKMD T P Y + R+ EIV +V  ++K  G++ +K+ FVP+    G+N+ +RS N+ WY GPTL E LDQ+  P +P DKPLR+P+Q+VY I G+G VPVGRVETGVLK G  V F P G   EV+S+E HH  + +A PGDN+GFNV+ V  KD+KRG VA  S + P   A  FT+Q
Sbjct:  101 MITGASQADAAILVVSAKKGEYEAGMSAEGQTREHIILAKTMGINQVIVAVNKMDLTDPPYDEKRFKEIVDQVGKFMKSFGFDMNKVKFVPVVAPTGENITQRSENMKWYTGPTLEEYLDQLEIPPKPVDKPLRIPIQEVYSISGVGVVPVGRVETGVLKVGDKVVFMPVGKVGEVRSIETHHTKIEKAEPGDNIGFNVRGVEKKDIKRGDVA-GSLNVPPTVADEFTAQ 329          
BLAST of FC931030 vs. ExPASy Swiss-Prot
Match: EF1A_THEAC (Elongation factor 1-alpha OS=Thermoplasma acidophilum GN=tuf PE=3 SV=2)

HSP 1 Score: 242.276 bits (617), Expect = 1.987e-63
Identity = 125/230 (54.35%), Postives = 162/230 (70.43%), Query Frame = 1
Query:   22 MITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQ 711
            MITGTSQAD A+L+I +  G    G+ +  QTREHA LA TLGV QM+   NKMDAT+P YS+ RY+E+  +    L+ +G+    I FVPISG++GDN+ + S N+ WYKGPTLL+ALD    P++P +KPLR+P++DVY I GIGTVPVGRVETGVLKPG  V F P+    +VKS+EMHHE L +A PGDN+GFNV+ ++  D+KRG V  +  D P      FT+Q
Sbjct:  102 MITGTSQADAAILVISAREG---EGVME--QTREHAFLARTLGVPQMVVAINKMDATSPPYSEKRYNEVKADAEKLLRSIGFKD--ISFVPISGYKGDNVTKPSPNMPWYKGPTLLQALDAFKVPEKPINKPLRIPVEDVYSITGIGTVPVGRVETGVLKPGDKVIFLPADKQGDVKSIEMHHEPLQQAEPGDNIGFNVRGIAKNDIKRGDVCGH-LDTPPTVVKAFTAQ 323          
BLAST of FC931030 vs. ExPASy Swiss-Prot
Match: EF1A_METS5 (Elongation factor 1-alpha OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=tuf PE=3 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 1.987e-63
Identity = 113/230 (49.13%), Postives = 159/230 (69.13%), Query Frame = 1
Query:   22 MITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQ 711
            MITG SQAD A+L + +  G FE+G+S +GQTREH +LA T+G+ Q+I    KMD   P Y + RY+EI + +  ++K  G++  K+ F+PI    G+N+ +RS N+ WY GPTL EALD +  P +P DKPLRLP+Q+VY I G+GTVPVGRVE+GV+K G  + F P+G + EV+S+E HH  L +A PGDN+GFNV+ +  KD+KRG V  ++ + P   A  FT++
Sbjct:  101 MITGASQADAAILAVSARKGEFESGMSLEGQTREHIILAKTMGLNQVIVAITKMDVAEPPYDQKRYNEIKETIEKFMKSFGFDMSKVKFIPIVSITGENVTKRSENMKWYNGPTLEEALDMLEIPPKPVDKPLRLPIQEVYSISGVGTVPVGRVESGVMKVGDKIVFMPAGKSAEVRSIETHHTKLEKAEPGDNIGFNVRGIDKKDVKRGDVVGHTTNPPTV-AEEFTAR 329          
The following BLAST results are available for this feature:
BLAST of FC931030 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EF1A_DESMO3.059e-7257.39Elongation factor 1-alpha OS=Desulfurococcus mobil... [more]
EF1A_STAMF6.378e-7054.35Elongation factor 1-alpha OS=Staphylothermus marin... [more]
EF1A_IGNH44.134e-6954.74Elongation factor 1-alpha OS=Ignicoccus hospitalis... [more]
EF1A_AERPE7.052e-6954.35Elongation factor 1-alpha OS=Aeropyrum pernix GN=t... [more]
EF1AS_PORPU5.054e-6755.78Elongation factor 1-alpha S OS=Porphyra purpurea G... [more]
EF1A_SULSO3.276e-6652.17Elongation factor 1-alpha OS=Sulfolobus solfataric... [more]
EF1A_METJA3.622e-6554.98Elongation factor 1-alpha OS=Methanocaldococcus ja... [more]
EF1A_SULTO6.178e-6552.17Elongation factor 1-alpha OS=Sulfolobus tokodaii G... [more]
EF1A_THEAC1.987e-6354.35Elongation factor 1-alpha OS=Thermoplasma acidophi... [more]
EF1A_METS51.987e-6349.13Elongation factor 1-alpha OS=Metallosphaera sedula... [more]

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Properties
Property NameValue
Genbank descriptionC34100F08EF PostHarvP1 Citrus clementina cDNA clone C34100F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931030 ID=FC931030; Name=FC931030; organism=Citrus clementina; type=EST; length=719bp
ACATCGTGACTTTATTATACCATGATTACTGGTACTTCTCAGGCTGATTG
TGCTGTCCTTATCATCGACTCCACCACTGGTGGTTTTGAAGCTGGTATCT
CTAAGGATGGGCAGACCAGAGAGCACGCTCTACTTGCTTTCACCCTTGGT
GTGAAGCAAATGATTTGTTGCTGTAACAAGATGGATGCCACCACTCCCAA
GTATTCAAAGGCAAGATATGATGAAATTGTTAAGGAAGTCTCTTCCTACT
TGAAGAAGGTTGGCTACAACCCAGATAAGATTCCATTTGTCCCAATCTCT
GGATTTGAGGGTGATAACATGATTGAGAGGTCCACAAACCTTGACTGGTA
CAAGGGCCCAACCCTTCTTGAAGCTCTTGACCAGATCAATGAACCCAAGA
GACCAACAGACAAGCCTCTCCGTCTCCCCCTTCAGGATGTCTACAAGATT
GGTGGTATTGGAACTGTCCCTGTTGGCCGTGTTGAAACTGGTGTACTCAA
GCCCGGTATGATAGTCACATTCGGTCCATCTGGATTGACTACTGAAGTTA
AGTCAGTTGAGATGCACCATGAGTCTCTCCTGGAGGCACTTCCTGGTGAT
AATGTGGGGTTCAACGTTAAGAATGTTTCAGTGAAGGATCTTAAGCGTGG
TTACGTTGCATCTAACTCCAAGGATGATCCCGCCAAGGGGGCATCCAACT
TCACCTCCCAGNTATCATC
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