FC931030

Overview
NameFC931030
Unique NameFC931030
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length719
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931030 vs. ExPASy Swiss-Prot
Match: EF1A_METTH (Elongation factor 1-alpha OS=Methanobacterium thermoautotrophicum GN=tuf PE=3 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 7.068e-61
Identity = 117/230 (50.87%), Postives = 156/230 (67.83%), Query Frame = 1
Query:   22 MITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQ 711
            MITG SQAD AVL++    G          QT+EH  L+ TLG+ Q+I   NKMD     Y + +++ +  EV++ +K VGY P  + F+P+S FEGDN+  +S N  WYKG TL+EALD +  P++P D PLR+P+QDVY I G+GTVPVGRVETGVLK G  V F P+G++ EVKS+EMHHE + +A PGDN+GFNV+ V   D++RG VA +  D+P K A  FT+Q
Sbjct:   92 MITGASQADAAVLVVAVDDGVMP-------QTKEHVFLSRTLGINQLIVAINKMDLVN--YDEEKFNALKDEVAALIKTVGYKPSDVEFIPLSAFEGDNITSKSENTPWYKGKTLVEALDDLEAPEKPVDLPLRIPIQDVYSITGVGTVPVGRVETGVLKKGENVIFEPAGVSGEVKSIEMHHEMIEQAEPGDNIGFNVRGVGKNDIRRGDVAGH-LDNPPKVAKEFTAQ 311          
BLAST of FC931030 vs. ExPASy Swiss-Prot
Match: EF1A_METBU (Elongation factor 1-alpha OS=Methanococcoides burtonii (strain DSM 6242) GN=tuf PE=3 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 7.068e-61
Identity = 119/230 (51.74%), Postives = 151/230 (65.65%), Query Frame = 1
Query:   22 MITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQ 711
            MITG SQAD AVL++ +  G          QT+EH  L+ TLG+ Q+I   NKMDA   KYS+ RY+E+ KEVS  L  VG+  D +PF+P S FEGDN+ + S N  WY GP LLE L+ +  P +P   PLR+P+QD Y I GIGTVPVGRVETG++K G  VTF PSG T EVKS+EMHHE   +A+PGDN+G+NV+ +   D++RG V   + D P   A  FT Q
Sbjct:  101 MITGASQADAAVLVVAAPDGVM-------AQTKEHVFLSRTLGINQLIVAINKMDAA--KYSEDRYNEVKKEVSQLLGMVGFKADDVPFIPTSAFEGDNITKSSANTPWYTGPALLECLNNLTVPSKPDTLPLRIPVQDAYTISGIGTVPVGRVETGIMKKGQKVTFMPSGATGEVKSIEMHHEEWDQAVPGDNIGWNVRGIGKNDVRRGDVCGPA-DKPPSVADEFTGQ 320          
BLAST of FC931030 vs. ExPASy Swiss-Prot
Match: EF1A_METST (Elongation factor 1-alpha OS=Methanosphaera stadtmanae (strain DSM 3091) GN=tuf PE=3 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 9.232e-61
Identity = 115/230 (50.00%), Postives = 159/230 (69.13%), Query Frame = 1
Query:   22 MITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQ 711
            MITG SQAD AVL++ +  G          QT+EH  L+ TLG+ Q+I   NKMD     YS+ +++E+ +E+ + +  VG+ P  +PF+P+S FEGDN+ E+S+N  WYKG TL++ LD ++EP +P D PLRLP+QDVY I G+GTVPVGR+ETG+LK    + F P+G+T EVKS+EMHHE L +A PGDNVGFNV+ V   D+KRG VA  +++ P+  A  F +Q
Sbjct:   92 MITGASQADAAVLVVAANDGIMP-------QTKEHIFLSRTLGINQLIIAINKMDVVD--YSEDKFNELKEELGALISTVGFKPSDVPFIPVSAFEGDNISEKSSNTPWYKGNTLVQELDALDEPDKPVDLPLRLPIQDVYSITGVGTVPVGRIETGILKTAENIAFEPAGVTGEVKSIEMHHEVLDKAEPGDNVGFNVRGVGKNDIKRGDVAGTTQNPPSV-AKEFKAQ 311          
BLAST of FC931030 vs. ExPASy Swiss-Prot
Match: EF1A_METMA (Elongation factor 1-alpha OS=Methanosarcina mazei GN=tuf PE=3 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 9.232e-61
Identity = 115/230 (50.00%), Postives = 156/230 (67.83%), Query Frame = 1
Query:   22 MITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQ 711
            MITG SQAD AVL++ +  G          QT+EH  L+ TLG+ Q+I   NKMDA    YS+ARY E+V++VS  LK +G+ P +IPF+P S F GDN+++ S    WYKGP ++EAL+ + EP++P+  PLR+P++D Y I GIGTVPVGRVETGV+K G  V F P G   EVKS+EMHHE + +A PGDN+G+NV+ +   D++RG V  ++ D+P K A  F  Q
Sbjct:  102 MITGASQADAAVLVVAAPDGVM-------AQTKEHIFLSRTLGINQLIVAINKMDAVD--YSEARYKEVVEQVSGILKMIGFKPSEIPFIPTSAFHGDNIMKLSDKTPWYKGPAIMEALNSLKEPEKPSTLPLRIPVEDAYTISGIGTVPVGRVETGVMKKGDKVVFMPGGAGGEVKSIEMHHEEIPQATPGDNIGWNVRGIGKNDVRRGDVCGHA-DNPPKVADEFVGQ 321          
BLAST of FC931030 vs. ExPASy Swiss-Prot
Match: EF1A_ARCFU (Elongation factor 1-alpha OS=Archaeoglobus fulgidus GN=tuf PE=3 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 1.575e-60
Identity = 119/230 (51.74%), Postives = 154/230 (66.96%), Query Frame = 1
Query:   22 MITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQ 711
            MITG SQAD AVL++D              QTREH  LA TLG+ Q+I   NKMD     Y +  Y+   + VS  LK VGY  D+IPF+P+S + GDN+ ++S    WY GPTLLEA D +  P++  DKPLR+P+QDVY I G+GTVPVGRVE+GVL+ G  V F P+G++ EVKS+EMHHE + EA PGDN+GFNV+ VS KD++RG VA +  D+P     +FT+Q
Sbjct:  102 MITGASQADAAVLVMDVVE-------KVQPQTREHIFLARTLGINQIIVAINKMDRVN--YDQKEYEAAKEAVSKLLKMVGYKVDEIPFIPVSAYYGDNVAKKSDKTPWYNGPTLLEAFDLLKPPEKLVDKPLRIPIQDVYSISGVGTVPVGRVESGVLRVGDKVVFEPAGVSGEVKSIEMHHEPIQEAYPGDNIGFNVRGVSKKDIRRGDVAGH-PDNPPTVVKDFTAQ 321          
BLAST of FC931030 vs. ExPASy Swiss-Prot
Match: EF1A_METB6 (Elongation factor 1-alpha OS=Methanoregula boonei (strain 6A8) GN=tuf PE=3 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 2.686e-60
Identity = 116/230 (50.43%), Postives = 155/230 (67.39%), Query Frame = 1
Query:   22 MITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQ 711
            MITG SQAD A+L++ +  G  E       QT+EH  LA TLG+ Q+I   NKMDA   K+ + R++E+ KE+S  +K VGY P++  F+PIS  +G N+   S    WYKGP L+ ALD   EP +PTDKPLRLP+QD Y I GIGTVPVGRVETG++K GM V+F P+    E+KS+EMHHE + +A+PGDNVGFNV+ ++  D++RG V   ++  P   A  FT+Q
Sbjct:  102 MITGASQADAAILVVAAPDGVME-------QTKEHVFLARTLGITQIIIAINKMDAV--KFDEKRFNEVKKELSDLIKMVGYKPEETLFIPISSLQGINIKANSPETPWYKGPALIPALDTFKEPSKPTDKPLRLPIQDSYSISGIGTVPVGRVETGIMKKGMKVSFMPANKDGEIKSIEMHHEEIPQAVPGDNVGFNVRGIAKGDIRRGDVCGPAEQPPTV-ADEFTAQ 321          
BLAST of FC931030 vs. ExPASy Swiss-Prot
Match: EF1A_METPE (Elongation factor 1-alpha OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=tuf PE=3 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 4.582e-60
Identity = 117/230 (50.87%), Postives = 154/230 (66.96%), Query Frame = 1
Query:   22 MITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQ 711
            MITG SQAD A+L++ +  G  E       QT+EH  LA TLG+ Q++   NKMDA    Y + R++E+ KE++  +  VGY   +I F+P+S F+G N+ ++S    WY GPTLLEALD   EP +PTDKP RLP+QDVY I GIGTVPVGR+ETG++K GM V+F P+    E+KS+EMHHE   +ALPGDNVGFNV+ V   D++RG V   + D P   A  FT+Q
Sbjct:  102 MITGASQADAAILVVAAPDGVME-------QTKEHVFLARTLGITQLVIAINKMDAVN--YDQKRFEEVKKELTQLIGMVGYKAAEILFIPMSSFKGVNISKKSPETPWYTGPTLLEALDTFKEPDKPTDKPFRLPIQDVYSISGIGTVPVGRIETGIMKKGMKVSFMPANKDGEIKSIEMHHEEQPQALPGDNVGFNVRGVGKNDIRRGDVCGPA-DIPPTVADEFTAQ 321          
BLAST of FC931030 vs. ExPASy Swiss-Prot
Match: EF1A_METAC (Elongation factor 1-alpha OS=Methanosarcina acetivorans GN=tuf PE=3 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 4.582e-60
Identity = 113/230 (49.13%), Postives = 156/230 (67.83%), Query Frame = 1
Query:   22 MITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQ 711
            MITG SQAD A+L++ +  G          QT+EH  L+ TLG+ Q+I   NKMDA   +YS+A+Y E+V++VS  LK +G+ P  IPF+P S F GDN+ + S    WYKGP +++ALD++ EP++P+  PLR+P++D Y I GIGTVPVGRVETGV+K G  V F P G   EVKS+EMHHE + +A PGDN+G+NV+ +   D++RG V  ++ D+P K A  F  Q
Sbjct:  102 MITGASQADAAILVVAAPDGVM-------AQTKEHIFLSRTLGINQLIIAINKMDAV--EYSEAKYKEVVEQVSGLLKMIGFKPANIPFIPTSAFMGDNITKLSEKTPWYKGPVIMQALDELKEPEKPSTLPLRIPVEDAYTISGIGTVPVGRVETGVMKKGDKVIFMPGGAGGEVKSIEMHHEEIPQAYPGDNIGWNVRGIGKNDVRRGDVCGHT-DNPPKVADEFVGQ 321          
BLAST of FC931030 vs. ExPASy Swiss-Prot
Match: EF1A_PYRWO (Elongation factor 1-alpha OS=Pyrococcus woesei GN=tuf PE=3 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 5.984e-60
Identity = 118/226 (52.21%), Postives = 156/226 (69.03%), Query Frame = 1
Query:   22 MITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSG------LTTEVKSVEMHHESLLEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDP 681
            MITG SQAD AVL++ +T G          QT+EHA LA TLG+K +I   NKMD     Y++ R++E+  +V   LK +GY     P +PIS +EG+N++++S  + WY GPTL+EALDQI EP++P DKPLR+P+QDVY I G+GTVPVGRVETG L+ G +V F P+       +  EVKS+EMHHE L EALPGDN+GFNV+ VS  D+KRG VA ++ + P
Sbjct:  102 MITGASQADAAVLVVAATDGVMP-------QTKEHAFLARTLGIKHIIVAINKMDMVN--YNQKRFEEVKAQVEKLLKMLGYKD--FPVIPISAWEGENVVKKSDKMPWYNGPTLIEALDQIPEPEKPVDKPLRIPIQDVYSIKGVGTVPVGRVETGKLRVGEVVIFEPASTIFHKPIQGEVKSIEMHHEPLEEALPGDNIGFNVRGVSKNDIKRGDVAGHTTNPP 316          
BLAST of FC931030 vs. ExPASy Swiss-Prot
Match: EF1A_PYRFU (Elongation factor 1-alpha OS=Pyrococcus furiosus GN=tuf PE=3 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 5.984e-60
Identity = 118/226 (52.21%), Postives = 156/226 (69.03%), Query Frame = 1
Query:   22 MITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSG------LTTEVKSVEMHHESLLEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDP 681
            MITG SQAD AVL++ +T G          QT+EHA LA TLG+K +I   NKMD     Y++ R++E+  +V   LK +GY     P +PIS +EG+N++++S  + WY GPTL+EALDQI EP++P DKPLR+P+QDVY I G+GTVPVGRVETG L+ G +V F P+       +  EVKS+EMHHE L EALPGDN+GFNV+ VS  D+KRG VA ++ + P
Sbjct:  100 MITGASQADAAVLVVAATDGVMP-------QTKEHAFLARTLGIKHIIVAINKMDMVN--YNQKRFEEVKAQVEKLLKMLGYKD--FPVIPISAWEGENVVKKSDKMPWYNGPTLIEALDQIPEPEKPVDKPLRIPIQDVYSIKGVGTVPVGRVETGKLRVGEVVIFEPASTIFHKPIQGEVKSIEMHHEPLEEALPGDNIGFNVRGVSKNDIKRGDVAGHTTNPP 314          
The following BLAST results are available for this feature:
BLAST of FC931030 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EF1A_METTH7.068e-6150.87Elongation factor 1-alpha OS=Methanobacterium ther... [more]
EF1A_METBU7.068e-6151.74Elongation factor 1-alpha OS=Methanococcoides burt... [more]
EF1A_METST9.232e-6150.00Elongation factor 1-alpha OS=Methanosphaera stadtm... [more]
EF1A_METMA9.232e-6150.00Elongation factor 1-alpha OS=Methanosarcina mazei ... [more]
EF1A_ARCFU1.575e-6051.74Elongation factor 1-alpha OS=Archaeoglobus fulgidu... [more]
EF1A_METB62.686e-6050.43Elongation factor 1-alpha OS=Methanoregula boonei ... [more]
EF1A_METPE4.582e-6050.87Elongation factor 1-alpha OS=Methanosphaerula palu... [more]
EF1A_METAC4.582e-6049.13Elongation factor 1-alpha OS=Methanosarcina acetiv... [more]
EF1A_PYRWO5.984e-6052.21Elongation factor 1-alpha OS=Pyrococcus woesei GN=... [more]
EF1A_PYRFU5.984e-6052.21Elongation factor 1-alpha OS=Pyrococcus furiosus G... [more]

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Properties
Property NameValue
Genbank descriptionC34100F08EF PostHarvP1 Citrus clementina cDNA clone C34100F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931030 ID=FC931030; Name=FC931030; organism=Citrus clementina; type=EST; length=719bp
ACATCGTGACTTTATTATACCATGATTACTGGTACTTCTCAGGCTGATTG
TGCTGTCCTTATCATCGACTCCACCACTGGTGGTTTTGAAGCTGGTATCT
CTAAGGATGGGCAGACCAGAGAGCACGCTCTACTTGCTTTCACCCTTGGT
GTGAAGCAAATGATTTGTTGCTGTAACAAGATGGATGCCACCACTCCCAA
GTATTCAAAGGCAAGATATGATGAAATTGTTAAGGAAGTCTCTTCCTACT
TGAAGAAGGTTGGCTACAACCCAGATAAGATTCCATTTGTCCCAATCTCT
GGATTTGAGGGTGATAACATGATTGAGAGGTCCACAAACCTTGACTGGTA
CAAGGGCCCAACCCTTCTTGAAGCTCTTGACCAGATCAATGAACCCAAGA
GACCAACAGACAAGCCTCTCCGTCTCCCCCTTCAGGATGTCTACAAGATT
GGTGGTATTGGAACTGTCCCTGTTGGCCGTGTTGAAACTGGTGTACTCAA
GCCCGGTATGATAGTCACATTCGGTCCATCTGGATTGACTACTGAAGTTA
AGTCAGTTGAGATGCACCATGAGTCTCTCCTGGAGGCACTTCCTGGTGAT
AATGTGGGGTTCAACGTTAAGAATGTTTCAGTGAAGGATCTTAAGCGTGG
TTACGTTGCATCTAACTCCAAGGATGATCCCGCCAAGGGGGCATCCAACT
TCACCTCCCAGNTATCATC
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