FC931030

Overview
NameFC931030
Unique NameFC931030
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length719
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931030 vs. ExPASy Swiss-Prot
Match: EF1A2_OSCTI (Elongation factor 1-alpha 2 OS=Oscheius tipulae GN=eft-2 PE=3 SV=1)

HSP 1 Score: 348.977 bits (894), Expect = 1.508e-95
Identity = 173/242 (71.49%), Postives = 199/242 (82.23%), Query Frame = 1
Query:   22 MITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKG------------PTLLEALDQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQ 711
            MITGTSQADCAVL++   TG FEAGISK+GQTREHALLA TLGVKQMI  CNKMD+T P +S+ R++EI+ EV S++KK+GYNP  IPFVPISGF GDNM+E S N+ WYKG             TLLEALD I  P+RPTD+PLRLPLQDVYKIGGIGTVPVGRVETGV+KPGM+VTF P  +TTEVKSVEMHHESL EA PGDNVGFNVKNVSVKD++RG V S+SK+DPAK + +FT+Q
Sbjct:  102 MITGTSQADCAVLVVACGTGEFEAGISKNGQTREHALLAQTLGVKQMIVACNKMDSTEPPFSEKRFEEIITEVKSFIKKIGYNPATIPFVPISGFNGDNMLEPSANMSWYKGWSVERKEGNASGKTLLEALDCIIPPQRPTDRPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPQNVTTEVKSVEMHHESLPEAQPGDNVGFNVKNVSVKDIRRGSVCSDSKNDPAKESKSFTAQ 343          
BLAST of FC931030 vs. ExPASy Swiss-Prot
Match: EF1A1_OSCTI (Elongation factor 1-alpha 1 OS=Oscheius tipulae GN=eft-1 PE=3 SV=1)

HSP 1 Score: 348.977 bits (894), Expect = 1.508e-95
Identity = 173/242 (71.49%), Postives = 199/242 (82.23%), Query Frame = 1
Query:   22 MITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKG------------PTLLEALDQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQ 711
            MITGTSQADCAVL++   TG FEAGISK+GQTREHALLA TLGVKQMI  CNKMD+T P +S+ R++EI+ EV S++KK+GYNP  IPFVPISGF GDNM+E S N+ WYKG             TLLEALD I  P+RPTD+PLRLPLQDVYKIGGIGTVPVGRVETGV+KPGM+VTF P  +TTEVKSVEMHHESL EA PGDNVGFNVKNVSVKD++RG V S+SK+DPAK + +FT+Q
Sbjct:  102 MITGTSQADCAVLVVACGTGEFEAGISKNGQTREHALLAQTLGVKQMIVACNKMDSTEPPFSEKRFEEIITEVKSFIKKIGYNPATIPFVPISGFNGDNMLEPSANMSWYKGWSVERKEGNASGKTLLEALDCIIPPQRPTDRPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPQNVTTEVKSVEMHHESLPEAQPGDNVGFNVKNVSVKDIRRGSVCSDSKNDPAKESKSFTAQ 343          
BLAST of FC931030 vs. ExPASy Swiss-Prot
Match: EF1A_TETPY (Elongation factor 1-alpha OS=Tetrahymena pyriformis PE=2 SV=1)

HSP 1 Score: 347.821 bits (891), Expect = 3.359e-95
Identity = 170/230 (73.91%), Postives = 191/230 (83.04%), Query Frame = 1
Query:   22 MITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQ 711
            MITGTSQAD A+L+I S  G FEAGISKDGQTREHALLAFTLGVKQMI C NKMD  T  +S+ RY EI KE+S YLKKVGY PD IPF+PISGF GDNM+ERSTN  WYKGP L+EALD +  PKRP DKPLRLPLQDVYKIGGIGTVPVGRVETGV+KPGM + F P+ +  E KSVEMHHE L EA+PGDNVGFN+K VSVKD++RG VAS++K+DPAK A+ F SQ
Sbjct:  103 MITGTSQADVAILMIASPQGEFEAGISKDGQTREHALLAFTLGVKQMIVCLNKMDEKTVNFSEERYQEIKKELSDYLKKVGYKPDTIPFIPISGFNGDNMLERSTNAPWYKGPILVEALDALEPPKRPVDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMSIQFAPNKVIAECKSVEMHHEQLPEAVPGDNVGFNIKGVSVKDIRRGNVASDAKNDPAKEAATFYSQ 332          
BLAST of FC931030 vs. ExPASy Swiss-Prot
Match: EF1A_CHICK (Elongation factor 1-alpha 1 OS=Gallus gallus GN=EEF1A PE=2 SV=1)

HSP 1 Score: 346.665 bits (888), Expect = 7.482e-95
Identity = 174/242 (71.90%), Postives = 200/242 (82.64%), Query Frame = 1
Query:   22 MITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKG------------PTLLEALDQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQ 711
            MITGTSQADCAVLI+ +  G FEAGISK+GQTREHALLA+TLGVKQ+I   NKMD+T P YS+ RY+EIVKEVS+Y+KK+GYNPD + FVPISG+ GDNM+E S+N+ W+KG             TLLEALD I  P RPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGM+VTF P  +TTEVKSVEMHHE+L EALPGDNVGFNVKNVSVKD++RG VA +SK+DP   A+ FT+Q
Sbjct:  102 MITGTSQADCAVLIVAAGVGEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKKIGYNPDTVAFVPISGWNGDNMLEPSSNMPWFKGWKVTRKDGNASGTTLLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPVNVTTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDVRRGNVAGDSKNDPPMEAAGFTAQ 343          
BLAST of FC931030 vs. ExPASy Swiss-Prot
Match: EF1A4_OSCTI (Elongation factor 1-alpha 4 OS=Oscheius tipulae GN=eft-4 PE=3 SV=1)

HSP 1 Score: 346.665 bits (888), Expect = 7.482e-95
Identity = 172/242 (71.07%), Postives = 198/242 (81.82%), Query Frame = 1
Query:   22 MITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKG------------PTLLEALDQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQ 711
            MITGTSQADCAVL++   TG FEAGISK+GQTREHALLA TLGVKQMI  CNKMD+T P +S+ R++EI+ EV S++KK+GYNP  IPFVPISGF GDNM+E S N+ WYKG             TLLEALD I  P+RPTD+PLRLPLQDVYKIGGIGTVPVGRVETGV+KPGM+VTF P  +TTEVKSVEMHHESL EA PGDNVGFN KNVSVKD++RG V S+SK+DPAK + +FT+Q
Sbjct:  102 MITGTSQADCAVLVVACGTGEFEAGISKNGQTREHALLAQTLGVKQMIVACNKMDSTEPPFSEKRFEEIITEVKSFIKKIGYNPATIPFVPISGFNGDNMLEPSANMSWYKGWSVERKEGNASGKTLLEALDCIIPPQRPTDRPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPQNVTTEVKSVEMHHESLPEAQPGDNVGFNEKNVSVKDIRRGSVCSDSKNDPAKESKSFTAQ 343          
BLAST of FC931030 vs. ExPASy Swiss-Prot
Match: EF1A3_XENLA (Elongation factor 1-alpha, oocyte form OS=Xenopus laevis PE=1 SV=2)

HSP 1 Score: 346.665 bits (888), Expect = 7.482e-95
Identity = 173/242 (71.49%), Postives = 201/242 (83.06%), Query Frame = 1
Query:   22 MITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKG------------PTLLEALDQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQ 711
            MITGTSQADCAVLI+    G FEAGISK+GQTREHALLAFTLGVKQ+I   NKMD+T P +S+ R++EI KEVS+Y+KK+GYNP  +PFVPISG+ GDNM+E STN+ W+KG             TLLEALD I  P+RPT+KPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTF PS +TTEVKSVEMHHE+L+EALPGDNVGFNVKN+SVKD++RG VA +SK+DP   A +FT+Q
Sbjct:  102 MITGTSQADCAVLIVAGGVGEFEAGISKNGQTREHALLAFTLGVKQLIIGVNKMDSTEPPFSQKRFEEITKEVSAYIKKIGYNPATVPFVPISGWHGDNMLEASTNMPWFKGWKIERKEGNASGITLLEALDCIIPPQRPTNKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFAPSNVTTEVKSVEMHHEALVEALPGDNVGFNVKNISVKDIRRGNVAGDSKNDPPMQAGSFTAQ 343          
BLAST of FC931030 vs. ExPASy Swiss-Prot
Match: EF1A_ORYLA (Elongation factor 1-alpha OS=Oryzias latipes GN=eef1a PE=2 SV=1)

HSP 1 Score: 346.28 bits (887), Expect = 9.772e-95
Identity = 172/242 (71.07%), Postives = 199/242 (82.23%), Query Frame = 1
Query:   22 MITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKG------------PTLLEALDQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQ 711
            MITGTSQADCAVLI+ +  G FEAGISK+GQTREHALLAFTLGVKQ+I   NKMD+T P YS+AR++EI KEVS+Y+KK+GYNP  + FVPISG+ GDNM+E S  + W+KG             TLLEALD I  P RPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGM+VTF P  LTTEVKSVEMHHESL EA+PGDNVGFN+KNVSVK+++RGYVA +SK+DP K A++F +Q
Sbjct:  102 MITGTSQADCAVLIVAAGVGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSQARFEEIQKEVSTYIKKIGYNPAAVAFVPISGWHGDNMLEASDKMSWFKGWKIERKDGNASGTTLLEALDAILPPSRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPPNLTTEVKSVEMHHESLPEAVPGDNVGFNIKNVSVKEIRRGYVAGDSKNDPPKAAASFNAQ 343          
BLAST of FC931030 vs. ExPASy Swiss-Prot
Match: EF1A1_RAT (Elongation factor 1-alpha 1 OS=Rattus norvegicus GN=Eef1a1 PE=2 SV=1)

HSP 1 Score: 346.28 bits (887), Expect = 9.772e-95
Identity = 174/242 (71.90%), Postives = 199/242 (82.23%), Query Frame = 1
Query:   22 MITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKG------------PTLLEALDQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQ 711
            MITGTSQADCAVLI+ +  G FEAGISK+GQTREHALLA+TLGVKQ+I   NKMD+T P YS+ RY+EIVKEVS+Y+KK+GYNPD + FVPISG+ GDNM+E S N+ W+KG             TLLEALD I  P RPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGM+VTF P  +TTEVKSVEMHHE+L EALPGDNVGFNVKNVSVKD++RG VA +SK+DP   A+ FT+Q
Sbjct:  102 MITGTSQADCAVLIVAAGVGEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKKIGYNPDTVAFVPISGWNGDNMLEPSANMPWFKGWKVTRKDGSASGTTLLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPVNVTTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDVRRGNVAGDSKNDPPMEAAGFTAQ 343          
BLAST of FC931030 vs. ExPASy Swiss-Prot
Match: EF1A1_RABIT (Elongation factor 1-alpha 1 OS=Oryctolagus cuniculus GN=EEF1A1 PE=1 SV=1)

HSP 1 Score: 346.28 bits (887), Expect = 9.772e-95
Identity = 174/242 (71.90%), Postives = 199/242 (82.23%), Query Frame = 1
Query:   22 MITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKG------------PTLLEALDQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQ 711
            MITGTSQADCAVLI+ +  G FEAGISK+GQTREHALLA+TLGVKQ+I   NKMD+T P YS+ RY+EIVKEVS+Y+KK+GYNPD + FVPISG+ GDNM+E S N+ W+KG             TLLEALD I  P RPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGM+VTF P  +TTEVKSVEMHHE+L EALPGDNVGFNVKNVSVKD++RG VA +SK+DP   A+ FT+Q
Sbjct:  102 MITGTSQADCAVLIVAAGVGEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKKIGYNPDTVAFVPISGWNGDNMLEPSANMPWFKGWKVTRKDGNASGTTLLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPVNVTTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDVRRGNVAGDSKNDPPMEAAGFTAQ 343          
BLAST of FC931030 vs. ExPASy Swiss-Prot
Match: EF1A1_PONAB (Elongation factor 1-alpha 1 OS=Pongo abelii GN=EEF1A1 PE=2 SV=2)

HSP 1 Score: 346.28 bits (887), Expect = 9.772e-95
Identity = 174/242 (71.90%), Postives = 199/242 (82.23%), Query Frame = 1
Query:   22 MITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKG------------PTLLEALDQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQ 711
            MITGTSQADCAVLI+ +  G FEAGISK+GQTREHALLA+TLGVKQ+I   NKMD+T P YS+ RY+EIVKEVS+Y+KK+GYNPD + FVPISG+ GDNM+E S N+ W+KG             TLLEALD I  P RPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGM+VTF P  +TTEVKSVEMHHE+L EALPGDNVGFNVKNVSVKD++RG VA +SK+DP   A+ FT+Q
Sbjct:  102 MITGTSQADCAVLIVAAGVGEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKKIGYNPDTVAFVPISGWNGDNMLEPSANMPWFKGWKVTRKDGNASGTTLLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPVNVTTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDVRRGNVAGDSKNDPPMEAAGFTAQ 343          
The following BLAST results are available for this feature:
BLAST of FC931030 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EF1A2_OSCTI1.508e-9571.49Elongation factor 1-alpha 2 OS=Oscheius tipulae GN... [more]
EF1A1_OSCTI1.508e-9571.49Elongation factor 1-alpha 1 OS=Oscheius tipulae GN... [more]
EF1A_TETPY3.359e-9573.91Elongation factor 1-alpha OS=Tetrahymena pyriformi... [more]
EF1A_CHICK7.482e-9571.90Elongation factor 1-alpha 1 OS=Gallus gallus GN=EE... [more]
EF1A4_OSCTI7.482e-9571.07Elongation factor 1-alpha 4 OS=Oscheius tipulae GN... [more]
EF1A3_XENLA7.482e-9571.49Elongation factor 1-alpha, oocyte form OS=Xenopus ... [more]
EF1A_ORYLA9.772e-9571.07Elongation factor 1-alpha OS=Oryzias latipes GN=ee... [more]
EF1A1_RAT9.772e-9571.90Elongation factor 1-alpha 1 OS=Rattus norvegicus G... [more]
EF1A1_RABIT9.772e-9571.90Elongation factor 1-alpha 1 OS=Oryctolagus cunicul... [more]
EF1A1_PONAB9.772e-9571.90Elongation factor 1-alpha 1 OS=Pongo abelii GN=EEF... [more]

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Properties
Property NameValue
Genbank descriptionC34100F08EF PostHarvP1 Citrus clementina cDNA clone C34100F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931030 ID=FC931030; Name=FC931030; organism=Citrus clementina; type=EST; length=719bp
ACATCGTGACTTTATTATACCATGATTACTGGTACTTCTCAGGCTGATTG
TGCTGTCCTTATCATCGACTCCACCACTGGTGGTTTTGAAGCTGGTATCT
CTAAGGATGGGCAGACCAGAGAGCACGCTCTACTTGCTTTCACCCTTGGT
GTGAAGCAAATGATTTGTTGCTGTAACAAGATGGATGCCACCACTCCCAA
GTATTCAAAGGCAAGATATGATGAAATTGTTAAGGAAGTCTCTTCCTACT
TGAAGAAGGTTGGCTACAACCCAGATAAGATTCCATTTGTCCCAATCTCT
GGATTTGAGGGTGATAACATGATTGAGAGGTCCACAAACCTTGACTGGTA
CAAGGGCCCAACCCTTCTTGAAGCTCTTGACCAGATCAATGAACCCAAGA
GACCAACAGACAAGCCTCTCCGTCTCCCCCTTCAGGATGTCTACAAGATT
GGTGGTATTGGAACTGTCCCTGTTGGCCGTGTTGAAACTGGTGTACTCAA
GCCCGGTATGATAGTCACATTCGGTCCATCTGGATTGACTACTGAAGTTA
AGTCAGTTGAGATGCACCATGAGTCTCTCCTGGAGGCACTTCCTGGTGAT
AATGTGGGGTTCAACGTTAAGAATGTTTCAGTGAAGGATCTTAAGCGTGG
TTACGTTGCATCTAACTCCAAGGATGATCCCGCCAAGGGGGCATCCAACT
TCACCTCCCAGNTATCATC
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